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Fig. 3 in Gastric nematode diversity between estuarine and inland freshwater populations of the American alligator (Alligator mississippiensis, daudin 1802), and the prediction of intermediate hosts
Fig. 3. Prey content species richness accumulation curves based on 1000 randomizations using Estimate 9.1.0. Data obtained from stomach flushing or necropsy of American alligators from (A) coastal or (B) inland habitats between 2008 and 2011. The black broken line (- -) represents the upper 95% confidence level, and the broken dotted broken line (- · -) represents the lower 95% confidence level of the species accumulation curve. The slow approach to the asymptote in coastal habitats suggests prey contents of sampled alligators did not capture all probable prey. The asymptote of inland alligators slowly begins to plateau, which may suggest our sampling efforts were close to capturing most of the probable prey of alligators.
Fig. 2 in Gastric nematode diversity between estuarine and inland freshwater populations of the American alligator (Alligator mississippiensis, daudin 1802), and the prediction of intermediate hosts
Fig. 2. Nematode species richness accumulation curve (A) and Coleman rarefaction curve (B) based on 1000 randomizations using Estimate 9.1.0. The black broken line (- -) represents the upper 95% confidence level, and the broken dotted broken line (- · -) represents the lower 95% confidence level of the species accumulation curve (A). Upper and lower Coleman standard deviations are represented by solid black lines (B). Data obtained from stomach flushing or necropsy of American alligators from Florida and Georgia between 2008 and 2011. The rapid approach to the asymptote suggests we captured all possible species of alligator nematodes.
Fig. 2 in First identification of Echinococcus multilocularis in rodent intermediate hosts in Sweden
Fig. 2. Macroscopic photos of rodent livers containing Echinococcus multilocularis metacestode lesions. The ruler in each picture is in millimeters. (A) Liver from Microtus agrestis with one lesion that contained protoscoleces. (B) Liver from Arvicola amphibius with multiple lesions that did not contain protoscoleces. (C) Liver from Arvicola amphibius with multiple lesions that did contain protoscoleces. (D) Liver from Arvicola amphibius. Arrow points to the only lesion examined for protoscoleces, which were absent.
Fig. 1 in First identification of Echinococcus multilocularis in rodent intermediate hosts in Sweden
Fig. 1. Study areas and positive findings of E. multilocularis in southern Sweden at the beginning of the study, 2013. Boxes show study areas and stars indicate where positive foxes/ fox fecal samples had been found. Circles encompass the study areas where rodents positive for E. multilocularis were captured. The lines are county boundaries. (CRS: WGS 84, QGIS 2.12.3).
Рис. 5. Варианты преΑсказанной Αоменной структуры скавенΑжер-рецепторов гемоцитов моΛΛюсков Planorbarius corneus. Сокращения (зΑесь и ΑаΛее): SR — богатый цистеином Αомен скавенΑжер-рецептора, Filament — Αомен промежуточного фиΛамента, TSP1 — повторы тромбоспонΑина типа 1, KR — крингΛ-Αомен, LDLa — Αомен рецептора Λипопротеинов низкой пΛотности кΛасса А Fig. 5. Variants of the predicted domain structure of scavenger receptors from hemocytes of Planorbarius corneus molluscs. Abbreviations (here and in what follows): SR — scavenger receptor Cys-rich domain, Filament — intermediate filament protein, TSP1 — thrombospondin type 1 repeats, KR — kringle domain, LDLa — low-density lipoprotein receptor domain class A in Pathogen recognition molecules from hemocytes of Planorbarius corneus molluscs (Planorbidae, Pulmonata)
Рис. 5. Варианты преΑсказанной Αоменной структуры скавенΑжер-рецепторов гемоцитов моΛΛюсков Planorbarius corneus. Сокращения (зΑесь и ΑаΛее): SR — богатый цистеином Αомен скавенΑжер-рецептора, Filament — Αомен промежуточного фиΛамента, TSP1 — повторы тромбоспонΑина типа 1, KR — крингΛ-Αомен, LDLa — Αомен рецептора Λипопротеинов низкой пΛотности кΛасса А Fig. 5. Variants of the predicted domain structure of scavenger receptors from hemocytes of Planorbarius corneus molluscs. Abbreviations (here and in what follows): SR — scavenger receptor Cys-rich domain, Filament — intermediate filament protein, TSP1 — thrombospondin type 1 repeats, KR — kringle domain, LDLa — low-density lipoprotein receptor domain class A
Fig. 1 in Evidence of red panda as an intermediate host of Toxoplasma gondii and Sarcocystis species
Fig. 1. Sarcocysts and Toxoplasma gondii cysts in red panda or mice. A: Tissue cysts, leg muscle, red panda. Two oval cysts (arrow) were observed in the skeletal muscle cell. The walls of the two cysts (arrowhead) were deeply stained by eosin. Red panda, H&E. B: Partial magnification of figure A. a, The wall of the cyst was clearly and deeply stained by eosin. b, The bradyzoites were like cresent or banana, they were arranged in packets (arrowhead). c, Necleus of host cell. C: Tissue cyst (arrow) was cross reacted with T. gondii, the cysts were separated by septa and formed many compartments (arrowhead), leg muscle. T. gondii antibody, red panda, IHC. D: Tissue cysts of T. gondii in brain of mouse (arrows), brain squash, unstained, 75DPI. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Name Size Figure 4.2. Ratio of male to female participants-The Effects of CALL on Vocabulary Learning: A Case of Iranian Intermediate EFL Learners
<p>In the past, vocabulary teaching and learning were often given little priority in second<br> language programs but recently there has been a renewed interest in the nature of vocabulary and its<br> role in learning and teaching. Although most teachers might be aware of the importance of<br> technology, say, computer, rarely teachers use it for teaching vocabulary. Thus, the current study<br> aims at exploring the effects of CALL on vocabulary learning of Iranian EFL Learners. In this<br> study, 40 intermediate EFL learners, both male and female aged from 16 to 18 studying New<br> Interchange, book III, were chosen randomly from a language institute in Tehran. They were divided<br> into two twenty-member groups. The experimental group was given the VTS.S (a computer<br> program for teaching vocabularies), a computerized dictionary and provided with teacher efeedback.<br> The control group received no special software and vocabularies were taught using the<br> conventional ways with the help of a paper dictionary.</p>
Figure 4.1. Distribution of scores for the Nelson test-The Effects of CALL on Vocabulary Learning: A Case of Iranian Intermediate EFL Learners
<p>In the past, vocabulary teaching and learning were often given little priority in second<br> language programs but recently there has been a renewed interest in the nature of vocabulary and its<br> role in learning and teaching. Although most teachers might be aware of the importance of<br> technology, say, computer, rarely teachers use it for teaching vocabulary. Thus, the current study<br> aims at exploring the effects of CALL on vocabulary learning of Iranian EFL Learners. In this<br> study, 40 intermediate EFL learners, both male and female aged from 16 to 18 studying New<br> Interchange, book III, were chosen randomly from a language institute in Tehran. They were divided<br> into two twenty-member groups. The experimental group was given the VTS.S (a computer<br> program for teaching vocabularies), a computerized dictionary and provided with teacher efeedback.<br> The control group received no special software and vocabularies were taught using the<br> conventional ways with the help of a paper dictionary. A vocabulary pre-test based on the tests<br> available in their teacher's guide was given to both groups. The aim of this test was to make sure<br> that the students were not familiar with the words in advance. By pre-test/post-test comparison<br> researchers found learners exposed to VTS.S teacher e-feedback plus the computerized dictionary<br> scored higher than the control group. Both high-stake and low-stake holders can avail from the<br> findings of the study.</p>
Phase transitions as intermediate steps in the formation of molecularly engineered protein fibers
<p>This upload contains raw and unprocessed data sets including: Tensile test, diffraction, simulation, surface tension measurement, viscosity measurement, amino acid sequence and videos.</p>
F1 Maize Iso-Seq - Final & Intermediate files
<p>===============================================================================</p> <p>Variant Phasing and Haplotypic Expression from Single-molecule Sequencing in Maize</p> <p>===============================================================================</p> <p>Maize is a diploid species with very high genetic diversity. Haplotype phasing of genetic variants in maize is important for interpretation of the genome, population genetic and functional genomic analysis of allelic activity. However, due to splicing variability and sequencing length limitation, phasing at isoform level are always very challenge. Here, we developed a tool called ‘Iso-Phase’ to phase the isoforms in hybrids and present the first isoforms phasing study in maize using inbred lines B73 and Ki11, as well as their reciprocal crosses from full-length single-molecule sequencing. Our results show that maize parental lines and hybrid lines display different splicing activity, and 6,847 genes can be phased through Iso-Phase in two reciprocal hybrids using embryo, endosperm and root tissues. We identified parental origin isoforms in maize hybrids, different novel isoforms between maize parent and hybrid lines, provides measures of haplotypic expression that increase power and accuracy in studies of allelic expression. It is the first study of phased full-length isoforms in maize, as well as in plants, which provides insights about maize and plant heterosis at allele-specific full-length transcriptional level. The approach used in this study also provide important information for many other phasing studies in different species. </p>
Plate VII: Figures. 58-60. Anatya guttata, male anal appendages, left lateral view. (58) "normalis" form; (59) "guttata" form (both Base Camp); (60) intermediate specimen (Venezuela, Tachira, La Fria). Figures 61-64. Erythrodiplax amazonica, male ultimate instar exuviae (61), Exuviae, dorsal view; (62) left antenna; (63) labium with right palp, dorsal view; (64) anal pyramid, dorsal view. in Dragonflies (Odonata) From The Sierras Of Tapirapeco And Unturan, In The Extreme South Of Venezuela
Plate VII: Figures. 58-60. Anatya guttata, male anal appendages, left lateral view. (58) "normalis" form; (59) "guttata" form (both Base Camp); (60) intermediate specimen (Venezuela, Tachira, La Fria). Figures 61-64. Erythrodiplax amazonica, male ultimate instar exuviae (61), Exuviae, dorsal view; (62) left antenna; (63) labium with right palp, dorsal view; (64) anal pyramid, dorsal view.
Text-fig. 10.—A possible hunting set of Hell Creek theropods, drawn to scale. A, Tyrannosaurus rex. B, Albertosaurus lancensis. C, the Jordan theropod. D, Saurornithoides mongoliensis. S. mongoliensis is not present in the Hell Creek, but is used to represent those saurornithoidids and dromaeosaurids present and represented by isolated teeth. A fifth form, Paronychodon lacustris, also represented only by isolated teeth has not been included but was probably intermediate between the saurornithoidids and the Jordan theropod. in A new Theropod Dinosaur from the Upper Cretaceous of Central Montana
Text-fig. 10.—A possible hunting set of Hell Creek theropods, drawn to scale. A, Tyrannosaurus rex. B, Albertosaurus lancensis. C, the Jordan theropod. D, Saurornithoides mongoliensis. S. mongoliensis is not present in the Hell Creek, but is used to represent those saurornithoidids and dromaeosaurids present and represented by isolated teeth. A fifth form, Paronychodon lacustris, also represented only by isolated teeth has not been included but was probably intermediate between the saurornithoidids and the Jordan theropod.
Text-fig. 3. Cave deposits exposed in Section No. 2 and recorded paleomagnetic polarities. 1 – reworked deposits; 2 – clayey silt, light brown with abundant black dots, structureless; 3 – clayey silt to silty clay, brown, chaotically deposited; 4 – clayey silt, light brown, structureless; 5 – clayey silt, light brown, laminated; 6 – clayey silt to silty clay, brown, structureless; 7 – clayey silt to silty clay, light brown, structureless; 8 – clayey silt, brown with abundant white carbonate clasts; 9 – clayey sandy silt, brown with abundant lighter clayey fragments; 10 – clayey sandy silt, brown with sporadic lighter clayey fragments. Geomagnetic polarity scale: black (N) – normal polarities, white (R) – reversed polarities, grey – intermediate or uninterpretable polarities. For more details see text. in New Updated Results Of Paleomagnetic Dating Of Cave Deposits Exposed In Za Hájovnou Cave, Javoříčko Karst
Text-fig. 3. Cave deposits exposed in Section No. 2 and recorded paleomagnetic polarities. 1 – reworked deposits; 2 – clayey silt, light brown with abundant black dots, structureless; 3 – clayey silt to silty clay, brown, chaotically deposited; 4 – clayey silt, light brown, structureless; 5 – clayey silt, light brown, laminated; 6 – clayey silt to silty clay, brown, structureless; 7 – clayey silt to silty clay, light brown, structureless; 8 – clayey silt, brown with abundant white carbonate clasts; 9 – clayey sandy silt, brown with abundant lighter clayey fragments; 10 – clayey sandy silt, brown with sporadic lighter clayey fragments. Geomagnetic polarity scale: black (N) – normal polarities, white (R) – reversed polarities, grey – intermediate or uninterpretable polarities. For more details see text.
Figure 1 in Molecular data on Phyllodistomum macrocotyle (Digenea: Gorgoderidae) from an intermediate host Dreissena polymorpha (Bivalvia: Dreissenidae) in the Northern Dvina River Basin, Northwest Russia
Figure 1. Map of the study area: A) Geographic position of the research area (red color frame and red color point); B) The Northern Dvina River Basin (red color flags indicate points where zebra mussels infected with Phyllodistomum macrocotyle were found); C) Habitat of zebra mussel, the Yuras River; D) Trematode sporocysts located within the gills of Dreissena polymorpha.
Figure 2 in Molecular data on Phyllodistomum macrocotyle (Digenea: Gorgoderidae) from an intermediate host Dreissena polymorpha (Bivalvia: Dreissenidae) in the Northern Dvina River Basin, Northwest Russia
Figure 2. Maximum likelihood phylogeny of Phyllodistomum macrocotyle based on the nuclear dataset (28S rDNA gene fragment). Numbers near nodes are bootstrap support (BS) values of IQ-TREE. Scale bar indicates the branch lengths. The red color indicates our sequence from Northwest Russia.
Fig. 2 in Sensitive, quantitative detection of Besnoitia darlingi and related parasites in intermediate hosts and to assess felids as definitive hosts for known and as-yet undescribed related parasite species
Fig. 2. Coccidia-specific PCR to confirm the presence of DNA of various parasite species used to test the analytic specificity of the BdanjoRT1 real-time PCR. (1) Besnoitia darlingi, (2) B. neotomofelis, (3) B. oryctofelisi, (4) B. besnoiti (Evora isolate), (5) B. bennetti (Texas), (6) B. tarandi (Bt-CA-Quebec1), (7) Toxoplasma gondii, (8) Hammondia hammondi, (9) Neospora caninum, (10) H. heydorni, (11) Cystoisospora felis, (12) C. rivolta, (13) C. burrowsi, (14) C. canis, (15) Sarcocystis cruzi and (16) Crytosporidium parvum. Presence of (17) Giardia duodenalis and (18) Tritrichomonas foetus DNA was shown by amplification using species or genus-specific primers, respectively. C, negative control; M, marker.
Fig. 3 in Sensitive, quantitative detection of Besnoitia darlingi and related parasites in intermediate hosts and to assess felids as definitive hosts for known and as-yet undescribed related parasite species
Fig. 3. Analytic sensitivity (A) and standard curve (B) obtained for the threshold cycle (Cq) values obtained in the BdanjoRT1 real-time PCR using varying amounts of genomic Besnoitia darlingi DNA (approximately equivalent to the DNA content of 10.000 [blue], 1000 [green], 100 [red], 10 [brown] and 1 [black] B. darlingi tachyzoites) diluted in 100 ng/μl mouse DNA. Cq values used for regression are displayed as circles. Results on samples resembling DNA of 0.1 tachyzoite were not included in regression, since only two of four samples had reacted with a Cq value of 37.8 or 38.3 (displayed grey in A and as crosses in B). (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Sensitive, quantitative detection of Besnoitia darlingi and related parasites in intermediate hosts and to assess felids as definitive hosts for known and as-yet undescribed related parasite species
Fig. 1. Location of the primers and the probe of the Besnoitia darlingi/B.neotomofelis /B. oryctofelisi-specific real-time PCR assay BdanjoRT1 within the ITS-1 region of the rRNA gene. The sequences of the ITS-1 region of B. akodoni (AY545987, bold), B. jellisoni (AF076860, bold), B. neotomofelis (HQ909085, bold), B. darlingi (AF489696, bold) and B. oryctofelisi (AY182000, bold), were aligned relative to sequences of other Besnoitia spp. including B. besnoiti from Portugal, Spain and Germany, B. bennetti reported from the USA and Belgium, B. tarandi from Canada and Finland and those of Neospora caninum, Hammondia heydorni, Toxoplasma gondii and H. hammondi by using Clustal V (DNAStar, Madisin, Wisconsin, USA). Deletions and substitutions in the sequences relative to and within the clade of B. acodoni, B. jellisoni, B. neotomofelis, B. darlingi and B. oryctofelisi are indicated by black background. Sequences of the primer BdanjoRev and the Probe Bb11-12 are displayed in their complementary form. The probe Bb11-12 was established for a real-time PCR to detect B. besnoiti, but it is universal and can be used for the detection of all Besnoitia spp. mentioned here.
Fig. 7 in The morphological and molecular identification of the tapeworm, Taenia lynciscapreoli, in intermediate and definitive hosts in Poland
Fig. 7. Large rostellar hooks: A - larvae T. lynciscapreoli from roe deer; B – larvae T. hydatigena from wild boar, C - larvae T. hydatigena from moose.
Fig. 6 in The morphological and molecular identification of the tapeworm, Taenia lynciscapreoli, in intermediate and definitive hosts in Poland
Fig. 6. Phylogenetic tree of Taenia lynciscapreoli haplotypes, constructed by Bayesian inference (BI) analysis using MrBayes version 3.2. The HKY + G + I model was chosen as the best-fitting nucleotide substitution model using JModelTest version 2.1.10 software (Guindon and Gascuel, 2003; Darriba et al., 2012). Sequences of Echinococcus granulosus sensu stricto GenBank accession number AB688619 and Echinococcus multilocularis GenBank accession number AB461413 were used as the outgroup. Analysis was run for 1,000,000 generations, with 250,000 generations discarded as 'burn-in'. Nodal support is indicated as Bayesian posterior probabilities. Sequences generated in this study are shown in bold. The scale bars are proportional to the number of substitutions per site.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.