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zenodo28/100

Figure 1 from: Eisenhauer N, Bonkowski M, Brose U, Buscot F, Durka W, Ebeling A, Fischer M, Gleixner G, Heintz-Buschart A, Hines J, Jesch A, Lange M, Meyer S, Roscher C, Scheu S, Schielzeth H, Schloter M, Schulz S, Unsicker S, van Dam NM, Weigelt A, Weisser WW, Wirth C, Wolf J, Schmid B (2019) Biotic interactions, community assembly, and eco-evolutionary dynamics as drivers of long-term biodiversity–ecosystem functioning relationships. Research Ideas and Outcomes 5: e47042. https://doi.org/10.3897/rio.5.e47042

Figure 1 A. Conceptual diagram of the mechanistic approach of the planned Research Unit. B. Conceptual scheme of the proposed evolutionary niche shifts in plant monocultures and mixtures. This idea feeds into our understanding of how evolutionary history influences the ecological interactions of species that compete for growth factors, ultimately defining biotope space (gray rectangle; Hutchinson 1978). Graphically depicted, species (ellipses) in mixture will show increasing niche differentiation over time due to competition (niche overlap). Thus, history of selection in diverse communities is expected to result in greater interspecific differences (less overlap of ellipses) and more specialization (smaller ellipses) than a history of isolation (monocultures). In monocultures, species will experience strong selection pressure by accumulating soil-borne pathogens, and species may invest energy in chemical and morphological defense traits (depicted by ellipses shifting towards the same corner of the habitat space). Plants in mixtures together may exploit more available biotope space than single monocultures, causing increasing diversity effects on ecosystem functions over time. However, there is limited support for this assumption for traits related to light (e.g., Lipowsky et al. 2015, Roscher et al. 2015) and resource use (Jesch et al. 2018) so far.

opencc-by-4.0Oct 2019View details →
zenodo28/100

Figure 4 from: Eisenhauer N, Bonkowski M, Brose U, Buscot F, Durka W, Ebeling A, Fischer M, Gleixner G, Heintz-Buschart A, Hines J, Jesch A, Lange M, Meyer S, Roscher C, Scheu S, Schielzeth H, Schloter M, Schulz S, Unsicker S, van Dam NM, Weigelt A, Weisser WW, Wirth C, Wolf J, Schmid B (2019) Biotic interactions, community assembly, and eco-evolutionary dynamics as drivers of long-term biodiversity–ecosystem functioning relationships. Research Ideas and Outcomes 5: e47042. https://doi.org/10.3897/rio.5.e47042

Figure 4 Experimental design and hypotheses of the Ecotron Experiment. Briefly, four treatments will be established based on monoliths from a selection of the 9-year old Trait-Based Experiment (TBE; Ebeling et al. 2014) and from bare ground plots of the Jena Experiment as well as two seed sources: the respective plots and the original seed material that was used for the set-up of the TBE. (1) With plot-specific plant history and with plot-specific soil history; (2) without plot-specific plant history and with plot-specific soil history; (3) with plot-specific plant history and without plot-specific soil history; and (4) without plot-specific plant history and without plot-specific soil history. We expect the biodiversity–ecosystem function relationships to differ among the four treatments (see main text for details).

opencc-by-4.0Oct 2019View details →
zenodo28/100

Figure 3 from: Eisenhauer N, Bonkowski M, Brose U, Buscot F, Durka W, Ebeling A, Fischer M, Gleixner G, Heintz-Buschart A, Hines J, Jesch A, Lange M, Meyer S, Roscher C, Scheu S, Schielzeth H, Schloter M, Schulz S, Unsicker S, van Dam NM, Weigelt A, Weisser WW, Wirth C, Wolf J, Schmid B (2019) Biotic interactions, community assembly, and eco-evolutionary dynamics as drivers of long-term biodiversity–ecosystem functioning relationships. Research Ideas and Outcomes 5: e47042. https://doi.org/10.3897/rio.5.e47042

Figure 3 Hypothesized slope of BEF relationships in the different treatments of the Field Experiment (see main text for details). Note that the 'with plant history, with soil history' only serves as a control in the Field Experiment, and effects of plant history can only be tested in the planned Ecotron Experiment. Redrawn after Vogel et al. (2019). '+', with; '-', without.

opencc-by-4.0Oct 2019View details →
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Supplementary material 4 from: Eisenhauer N, Bonkowski M, Brose U, Buscot F, Durka W, Ebeling A, Fischer M, Gleixner G, Heintz-Buschart A, Hines J, Jesch A, Lange M, Meyer S, Roscher C, Scheu S, Schielzeth H, Schloter M, Schulz S, Unsicker S, van Dam NM, Weigelt A, Weisser WW, Wirth C, Wolf J, Schmid B (2019) Biotic interactions, community assembly, and eco-evolutionary dynamics as drivers of long-term biodiversity–ecosystem functioning relationships. Research Ideas and Outcomes 5: e47042. https://doi.org/10.3897/rio.5.e47042

Detailed design of the Ecotron Experiment

opencc-zeroOct 2019View details →
zenodo28/100

Supplementary material 5 from: Eisenhauer N, Bonkowski M, Brose U, Buscot F, Durka W, Ebeling A, Fischer M, Gleixner G, Heintz-Buschart A, Hines J, Jesch A, Lange M, Meyer S, Roscher C, Scheu S, Schielzeth H, Schloter M, Schulz S, Unsicker S, van Dam NM, Weigelt A, Weisser WW, Wirth C, Wolf J, Schmid B (2019) Biotic interactions, community assembly, and eco-evolutionary dynamics as drivers of long-term biodiversity–ecosystem functioning relationships. Research Ideas and Outcomes 5: e47042. https://doi.org/10.3897/rio.5.e47042

Brief description of the Ecotron Experiment

opencc-zeroOct 2019View details →
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Figure 2 from: Eisenhauer N, Bonkowski M, Brose U, Buscot F, Durka W, Ebeling A, Fischer M, Gleixner G, Heintz-Buschart A, Hines J, Jesch A, Lange M, Meyer S, Roscher C, Scheu S, Schielzeth H, Schloter M, Schulz S, Unsicker S, van Dam NM, Weigelt A, Weisser WW, Wirth C, Wolf J, Schmid B (2019) Biotic interactions, community assembly, and eco-evolutionary dynamics as drivers of long-term biodiversity–ecosystem functioning relationships. Research Ideas and Outcomes 5: e47042. https://doi.org/10.3897/rio.5.e47042

Figure 2 Structure of the proposed Research Unit. Three complementary experimental approaches are envisaged to study long-term biodiversity-ecosystem function (BEF) relationships, and how these are influenced by plant history and soil history. BEF patterns are studied in the Field Experiment with long-term plant diversity plots and manipulations of soil-history effects. BEF mechanisms are studied in the Ecotron Experiment and in Microcosm Experiments. In the Ecotron Experiment, plant history and soil history are independently crossed and detailed process measurements are possible. The Microcosm Experiments zoom in on focal interactions. In the Field Experiment and in the Ecotron Experiment, studies are conducted at the community level as well as at the plant individual level (magnifier; see detailed design of studies in the Appendices). Subprojects' (SPs') participation in experiments are illustrated with lines. The SPs of the proposed Research Unit fall into two tightly linked main categories (in gray) with two research areas each that aim at exploring variation in community assembly processes, micro-evolutionary changes, and resulting differences in biotic interactions as determinants of the long-term BEF relationship. Subprojects under "Microbial community assembly" (blue) and "Assembly and functions of animal communities" (red) mostly focus on plant diversity effects on the assembly of communities and their feedback effects on biotic interactions and ecosystem functions, while subprojects under "Mediators of plant-biotic interactions" (orange) and "Intraspecific diversity and micro-evolutionary changes" (green) mostly focus on plant diversity effects on plant trait expression and micro-evolution. PIs with requested personnel are underlined.

opencc-by-4.0Oct 2019View details →
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Supplementary material 3 from: Eisenhauer N, Bonkowski M, Brose U, Buscot F, Durka W, Ebeling A, Fischer M, Gleixner G, Heintz-Buschart A, Hines J, Jesch A, Lange M, Meyer S, Roscher C, Scheu S, Schielzeth H, Schloter M, Schulz S, Unsicker S, van Dam NM, Weigelt A, Weisser WW, Wirth C, Wolf J, Schmid B (2019) Biotic interactions, community assembly, and eco-evolutionary dynamics as drivers of long-term biodiversity–ecosystem functioning relationships. Research Ideas and Outcomes 5: e47042. https://doi.org/10.3897/rio.5.e47042

Plant species lists of the Field Experiment and the Ecotron Experiment

opencc-zeroOct 2019View details →
zenodo28/100

Supplementary material 4 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631

: Data type: statistical data

opencc-zeroMay 2019View details →
zenodo28/100

Supplementary material 5 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631

: Data type: measurement

opencc-zeroMay 2019View details →
zenodo28/100

Supplementary material 3 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631

: Data type: measurements

opencc-zeroMay 2019View details →
zenodo28/100

Supplementary material 2 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631

: Data type: parameters data

opencc-zeroMay 2019View details →
zenodo28/100

Supplementary material 1 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631

: Data type: measurement

opencc-zeroMay 2019View details →
zenodo28/100

Supplementary material 1 from: Petriccione B, Bricca A (2019) Thirty years of ecological research at the Gran Sasso d'Italia LTER site: climate change in action. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 9-39. https://doi.org/10.3897/natureconservation.34.30218

: Data type: measurements

opencc-zeroMay 2019View details →
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Supplementary material 1 from: Balestrini R, Delconte C, Buffagni A, Fumagalli A, Freppaz M, Calvo E, Buzzetti I (2019) Dynamic of nitrogen and dissolved organic carbon in an alpine forested catchment: atmospheric deposition and soil solution trends. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 41-66. https://doi.org/10.3897/natureconservation.34.30738

: Data type: statistical data

opencc-zeroMay 2019View details →
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Supplementary material 2 from: Pulina S, Lugliè A, Mariani MA, Sarria M, Sechi N, Padedda BM (2019) Multiannual decrement of nutrient concentrations and phytoplankton cell size in a Mediterranean reservoir. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 163-191. https://doi.org/10.3897/natureconservation.34.30116

: Data type: multimedia

opencc-zeroMay 2019View details →
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Supplementary material 1 from: Pulina S, Lugliè A, Mariani MA, Sarria M, Sechi N, Padedda BM (2019) Multiannual decrement of nutrient concentrations and phytoplankton cell size in a Mediterranean reservoir. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 163-191. https://doi.org/10.3897/natureconservation.34.30116

: Data type: multimedia

opencc-zeroMay 2019View details →
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Supplementary material 6 from: Petrocelli A, Cecere E, Rubino F (2019) Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 217-246. https://doi.org/10.3897/natureconservation.34.30055

: Data type: measurement

opencc-zeroMay 2019View details →
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Supplementary material 2 from: Petrocelli A, Cecere E, Rubino F (2019) Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 217-246. https://doi.org/10.3897/natureconservation.34.30055

: Data type: measurement

opencc-zeroMay 2019View details →
zenodo28/100

Supplementary material 5 from: Monti-Birkenmeier M, Diociaiuti T, Umani SF (2019) Long-term changes in abundance and diversity of tintinnids in the Gulf of Trieste (Northern Adriatic Sea). In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 373-395. https://doi.org/10.3897/natureconservation..29841

: Data type: statistical data

opencc-zeroMay 2019View details →
zenodo28/100

Supplementary material 5 from: Petrocelli A, Cecere E, Rubino F (2019) Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 217-246. https://doi.org/10.3897/natureconservation.34.30055

: Data type: measurement

opencc-zeroMay 2019View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record