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datasets available to search
ShareScore release 0.9.0
Dataset results
50 results for “metatranscriptomics”
Metagenomic and Metatranscriptomic Analysis of Clinical Plaque Samples
ClinicalTrials.gov study NCT05138978. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Pilot Project: The Amplicon and Metatranscriptomic Study of Intra and Extra Intestinal Microbiome in Non-infectious Uveitis Disease
ClinicalTrials.gov study NCT04126850. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota
GEO Series GSE231841. unidentified soil bacteria; Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Metatranscriptomics of Salmonella superspeader stool
GEO Series GSE207764. Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344. 27 samples. Type: Expression profiling by high throughput sequencing.
Microarray based metatranscriptomics in the human gut microbiome
GEO Series GSE76590. human gut metagenome. 233 samples. Type: Expression profiling by array.
Metatranscriptomic array analysis of “Candidatus Accumulibacter phosphatis”-enriched EBPR Sludge
GEO Series GSE17857. Candidatus Accumulibacter phosphatis; uncultured bacterium. 6 samples. Type: Expression profiling by array.
Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment
GEO Series GSE10119. marine metagenome. 4 samples. Type: Expression profiling by high throughput sequencing.
Effect of monocrotophos on gut metatranscriptome
GEO Series GSE90843. mouse gut metagenome. 4 samples. Type: Expression profiling by high throughput sequencing.
SpaceX Inspiration4 Oral, Nasal, and Skin Metagenomic and Metatranscriptomic Microbial Swabs
The SpaceX Inspiration4 mission was a 3-day mission with four private astronauts to low Earth orbit that occurred in September 2021. The crew collected biospecimen samples before, during, and after flight. One of these biospecimen collections included oral, nasal, and skin microbial swabs collected from ten locations (oral, nasal cavity, post-auricular, axillary vault, volar forearm, occiput, umbilicus, gluteal crease, glabella, and toe web space). Skin swabs were first dipped in nuclease-free water before swabbing each region for 30 seconds. Oral and nasal swabs did not include this swab-wetting step. Nuclease-free water samples were sequenced as controls. Swabs were collected at three pre-flight timespoints (L-92, L-44, L-3), two in-flight timepoints (flight day 2 (FD2), and flight day 3 (FD3)), and three post-flight timepoints (R+1, R+45, R+82). Swabs were stored in 400uL of Zymo Research DNA/RNA Shield at 4C until nucleic acid extraction. DNA and RNA were extracted from the same swab to generate metagenomic and metatranscriptomic profiles.
SpaceX Inspiration4 Dragon Capsule Metagenomic and Metatranscriptomic Microbial Swabs
The SpaceX Inspiration4 mission was a 3-day mission with four private astronauts to low Earth orbit that occurred in September 2021. The crew collected biospecimen samples before, during, and after flight. One of these biospecimen collections included microbial swabs collected from nine surfaces in the Dragon capsule (execute button, G-meter button, control touch screen - left, control touch screen - right, side hatch mobility aid, lid of waste locker, seat 2, commode panel, viewing dome) and one open air control. Swabs were collected twice during flight (flight day 2 (FD2), and flight day 3 (FD3)) and twice pre-flight in the crew training capsule in Hawthorne, CA (L-92, L-44). Swabs were stored in 400uL of Zymo Research DNA/RNA Shield at 4C until nucleic acid extraction. DNA and RNA were extracted from the same swab to generate metagenomic and metatranscriptomic profiles.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.