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Figure 3 in Genetic diversity of Undaria pinnatifida populations from China and their genetic relationship with those from Įapan and Korea as revealed by mitochondrial and nuclear DNA sequences
Figure 3: Maximum likelihood phylogenetic tree inferred from the alignment of the combined cox3 and tatC–tLeu sequences. Bootstrap values and Bayesian posterior probabilities>50% are shown, and "-" indicates a value <50%. The branch length is proportional to the sequence divergence indicated by the scale bar (substitutions per site). Refer to Uwai et al. (2006a) for explanation of the haplotype names and classification of the clades I to IV. The haplotypes detected in the Chinese samples in the present study are indicated with bold italicized fonts. Lessoniopsis littoralis was used as an outgroup to root the tree.
Figure 2 in Genetic diversity of Undaria pinnatifida populations from China and their genetic relationship with those from Įapan and Korea as revealed by mitochondrial and nuclear DNA sequences
Figure 2: Geographic distribution of haplotypes in natural and farmed populations of Undaria pinnatifida from China (A) and statistical parsimony network (B) of ITS1 sequences. The color areas in the pie charts are proportional to the ribotype frequency in the map. Small circles indicate undetected ribotypes. Each line connecting ribotypes represents one base mutation. The ribotypes detected in the Chinese samples in the present study are indicated in the ribotype network by the same colors as those in the map.
Figure 1 in Genetic diversity of Undaria pinnatifida populations from China and their genetic relationship with those from Įapan and Korea as revealed by mitochondrial and nuclear DNA sequences
Figure 1: Geographic distribution of haplotypes in natural and farmed populations of Undaria pinnatifida from China (A) and statistical parsimony network (B) of the combined cox3 and tatC–tLeu sequences. The color areas in the pie charts are proportional to the haplotype frequency in the map. Refer to Uwai et al. (2006a) and Table 3 for explanation of the haplotype names and classification of the clades I to IV, which are enclosed by boxes with lines of different patterns. Small circles indicate undetected haplotypes. Each line connecting haplotypes represents one base mutation. The haplotypes detected in the Chinese samples in the present study are indicated in the haplotype network with the same colors as those in the map.
Genetic diversity of the Nubian ibex in Oman as revealed by mitochondrial DNA
<p>The Nubian ibex (Capra nubiana) is patchily distributed across parts of Africa and Arabia. In Oman, it is one of the few free-ranging wild mammals found in the central and southern regions. Its population is declining due to habitat degradation, human expansion, poaching, and fragmentation. Here we investigated the population's genetic diversity using mitochondrial DNA (D-loop 186bp and cytochrome b 487bp). We found that the Nubian ibex in the southern region of Oman was more diverse (D-loop HD; 0.838) compared to the central region (0.511) and gene flow between them was restricted. We compared the genetic profiles of wild Nubian ibex from Oman with captive ibex. A Bayesian phylogenetic tree showed that wild Nubian ibex form a distinct clade independent from captive animals. This divergence was supported by high mean distances (D-loop 0.126,cytochrome b 0.0528) and high FST statistics (D-loop 0.725,cytochrome b 0.968). These results indicate that captive ibex are highly unlikely to have originated from the wild population in Oman and the considerable divergence suggests that the wild population in Oman should be treated as a distinct taxonomic unit. Further nuclear genetic work will be required to fully elucidate the degree of global taxonomic divergence of Nubian ibex populations.</p>
FIGURE 97 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 97. Type localities and localities for DNA sequence vouchers in the Phyllodes imperialis complex (white stars=type localities; red circles=first haplotype; yellow square=second haplotype).
FIGURE 85. Strict consensus tree from a in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 85. Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Eudocima clade (part).
FIGURE 82. Strict consensus tree from a in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 82. Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Eudocima clade (part).
FIGURE 80. Strict consensus tree from a in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 80. Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Gonodonta and Xylophylla+Eudocima formosa+Huebnerius+Gloriana clades.
FIGURE 84. Strict consensus tree from a in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 84. Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Eudocima clade (part).
FIGURE 81. A–B in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 81. A–B: Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Miniophyllodes +Minioides+Lobophyllodes clade; C: Phyllodes clade recovered on some but not all equally parsimonious trees.
FIGURE 79. A–B in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 79. A–B: Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Plusiodonta clade; C: Calyptra clade recovered on some but not all equally parsimonious trees.
FIGURE 83. Strict consensus tree from a in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 83. Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Eudocima clade (part).
FIGURE 70 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 70. Eudocima afrikana male legs. These preparations are KOH treated with many hairs and scales removed.
FIGURE 86. Strict consensus tree from a in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 86. Strict consensus tree from a parsimony analysis of Calpinae COI 5' mtDNA sequences (part): Eudocima clade (part).
FIGURE 59 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 59. Eudocima female genitalia habitus (ventral aspect). Note Figure 3 is dermestid damaged and dyed with chlorozol black.
FIGURE 56 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 56. Eudocima coremata: A: KOH treated abdomen with no hairs or scales removed (lateral aspect); B–F: slide mounted eighth segment of abdominal cuticle with many or all hairs and scales removed; G: Eighth sternite in alcohol and still attached to tergite, with hairs and scales removed (left); sternites 7–8 in alcohol with hairs of coremata cut off but not removed, other hairs and scales removed (right).
FIGURE 54 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 54. Three dimensional phallus and everted Eudocima vesica with the ventral phallus hood orientated laterally and up.
FIGURE 57 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 57. Eudocima coremata: A–D: slide mounted eighth segment of abdominal cuticle with most hairs and scales removed; E: Eighth abdominal segment in alcohol with hairs of coremata cut off but not removed.
FIGURE 52 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 52. Three dimensional phallus and everted Eudocima vesica with the ventral phallus hood orientated laterally and down.
FIGURE 55 in Mitochondrial genetics of Ophiderini, with a new species from the Eudocima phalonia species group (Lepidoptera: Noctuidae: Calpinae)
FIGURE 55. Three dimensional phallus and everted Eudocima vesica with the ventral phallus hood orientated laterally and up.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.