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ShareScore release 0.9.0
Dataset results
53 results for “molecular clock”
Data from: Distinguishing between convergent evolution and violation of the molecular clock for three taxa
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The Skeletal Muscle Molecular Clock Regulates Sarcomere Length Through Titin Splicing [2]
GEO Series GSE189863. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
The Skeletal Muscle Molecular Clock Regulates Sarcomere Length Through Titin Splicing [1]
GEO Series GSE172067. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Multiple molecular links between the circadian clock and memory centers in honey bees
GEO Series GSE263576. Apis mellifera. 27 samples. Type: Expression profiling by high throughput sequencing.
Data from: Grouping substitution types into different relaxed molecular clocks
Different types of nucleotide substitutions experience different patterns of rate change over time. We propose clustering context-dependent (or context-independent) nucleotide substitution types according to how their rates change and then using the grouping for divergence time estimation. With our models, relative rates among types that are in the same group are fixed, whereas absolute rates of the types within a group change over time according to a shared relaxed molecular clock. We illustrate our procedure by analysing a 0.15 Mb intergenic region to infer divergence times relating eight primates. The different groupings of substitution types that we explore have little effect on the posterior means of divergence times, but the widths of the credibility intervals decrease as the number of groups increases.
Data from: Grouping substitution types into different relaxed molecular clocks
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Pancreatic alpha and beta-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression
GEO Series GSE95156. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Ultradian Molecular Rhythms Emerge in the Absence of a Circadian Clock
GEO Series GSE171975. Mus musculus. 140 samples. Type: Expression profiling by high throughput sequencing.
The Skeletal Muscle Molecular Clock Regulates Sarcomere Length Through Titin Splicing
GEO Series GSE189865. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Molecular correlates of sleep deprivation in the brain of three inbred mouse strains in an around-the-clock experiment
GEO Series GSE9442. Mus musculus. 71 samples. Type: Expression profiling by array.
Glaucoma Inducing Retinal Ganglion Cell Degeneration Alters Diurnal Rhythm of Key Molecular Components of the Central Clock and Locomotor Activity in Mice
GEO Series GSE268323. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
Elevated expression of the molecular clock suppressors Period 1 and Period 2 promote myotube atrophy in vitro with implications to the loss of limb muscle mass following androgen deprivation
GEO Series GSE299632. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Binge Alcohol Disrupts Skeletal Muscle Core Molecular Clock Independent of Glucocorticoids
GEO Series GSE183665. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.