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456 results for “motifs”
Stable motifs delay species loss in simulated food webs
Open the record for dataset details and reuse information.
Data for: The CD4 transmembrane GGXXG and juxtamembrane (C/F)CV+C motifs mediate pMHCII-specific signaling independently of CD4-Lck interactions
Open the record for dataset details and reuse information.
Data for the paper "Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study".
<p>Data for the paper "Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study".</p>
ERC Locus Ludi. Play and Games in Antiquity. The Reception of the Alea iacta est Motif
<p>Katarzyna Marciniak, Warsaw is the PI of the ERC project Our Mythical Childhood. she is well known for her work on reception of antiquity in present youth culture as well as on ancient literature. Her talk: From Rubicon to the Children’s Room, or the Reception of the Alea iacta est Motif in Youth Culture, was given at the International Conference, Play and Games in Antiquity. Definition, Transmission, Reception, September 17-19, 2018, Swiss Museum of Games.</p> <p>Movie/Music: <a href="https://www.edwanmusic.com/">https://www.edwanmusic.com/</a></p> <p>More about: www.locusludi.ch</p>
Reinvestigating the Photoprotection Properties of a Mycosporine Amino Acid Motif
<p>With the growing concern regarding commercially available ultraviolet (UV) filters damaging the environment, there is an urgent need to discover new UV filters. A family of molecules called mycosporines and mycosporine-like amino acids (referred to as MAAs collectively) are synthesized by cyanobacteria, fungi and algae and act as the natural UV filters for these organisms. Mycosporines are formed of a cyclohexenone core structure while mycosporine-like amino acids are formed of a cyclohexenimine core structure. To better understand the photoprotection properties of MAAs, we implement a bottom-up approach by first studying a simple analog of an MAA, 3-aminocyclohex-2-en-1-one (ACyO). Previous experimental studies on ACyO using transient electronic absorption spectroscopy (TEAS) suggest that upon photoexcitation, ACyO becomes trapped in the minimum of an S1 state, which persists for extended time delays (>2.5 ns). However, these studies were unable to establish the extent of electronic ground state recovery of ACyO within 2.5 ns due to experimental constraints. In the present studies, we have implemented transient vibrational absorption spectroscopy (as well as complementary TEAS) with Fourier transform infrared spectroscopy and density functional theory to establish the extent of electronic ground state recovery of ACyO within this time window. We show that by 1.8 ns, there is >75% electronic ground state recovery of ACyO, with the remaining percentage likely persisting in the electronic excited state. Long-term irradiation studies on ACyO have shown that a small percentage degrades after 2 h of irradiation, plausibly due to some of the aforementioned trapped ACyO going on to form a photoproduct. Collectively, these studies imply that a base building block of MAAs already displays characteristics of an effective UV filter.</p>
Half of a twin capital with a rosette motif
The presented capital is one of seven halves of twin capitals uncovered during the years 1947–1953 by archaeologists during research in the course of reconstructing eastern wing of the monastery. The capital is considered to be one of the best examples of Romanesque masonry in Poland. It comes from the first monastic complex in Tyniec. However, researchers do not agree whether the twin capitals were originally located in the church or in the cloisters. The capital has the shape of a truncated pyramid turned upside down with a rectangular abacus, damaged in the corners, in the upper part. The head's surface is covered by floral ornamentation with palmettes, accompanied by an intertwined scroll forming heart-like shapes. On the reverse, there appears the shape of an eight-pointed star formed by the combination of two squares. The centre of the star is filled with a rosette. 4th quarter of the 11th century, Tyniec Museum of the Benedictine Abbey in Tyniec Inventory number: DA/165/2012 Source: Objaverse 1.0 / Sketchfab
Carranque Mosaic Geometric/Plant Motifs
Mosaic preserved in the Roman villa of Carranque (Toledo, Spain). The residential part of the Roman villa of Carranque preserves one of the best collections of Roman mosaics in Spain. Most of the mosaics have been dated to the 4th century AD. In this case, we see a decoration with geometric and plant motifs. The mosaics of the Roman villa of Carranque are made up of thousands of tesserae, made up of small stones, ceramic fragments and glass of different colors, whose size ranges between 2 millimeters and 4 centimeters. 3D model made from 322 images in Reality Capture. Additional processing completed in Geomagic Wrap, Zbrush, Substance Designer, and Blender. Source: Objaverse 1.0 / Sketchfab
Dalle gravée au motif anthropomorphe
Dalle de roche (grès) gravée au motif anthropomorphe de datation et origine inconnue. issue de pillage archéologique au Mali et saisi aux USA en 2022. Dimensions L = 1,02m l = 53cm E = 7cm. Collection Musée National du Mali Source: Objaverse 1.0 / Sketchfab
Carranque Mosaic Geometric/Plant Motifs 2
Mosaic preserved in the Roman villa of Carranque (Toledo, Spain). The residential part of the Roman villa of Carranque preserves one of the best collections of Roman mosaics in Spain. Most of the mosaics have been dated to the 4th century AD. In this case, we see a decoration with geometric and plant motifs. Some of these mosaics decorate rooms that had underfloor heating systems (hypocaustum), a luxury available only to the wealthiest citizens. 3D model made in Reality Capture using 402 images. Additional processing completed in Geomagic Wrap, Zbrush, Substance Designer, and Blender. Source: Objaverse 1.0 / Sketchfab
Supplemental data for "The genome of a sea spider corroborates a shared Hox cluster motif in arthropods with reduced posterior tagma"
<div># List of files on Zenodo</div> <p> </p> <div>Data accompanying the manuscript have been uploaded on Zenodo (10.5281/zenodo.14185694). Here we</div> <div>present a brief description of each file and put them in meaningful groups.</div> <p> </p> <div>## referenced supplement</div> <p> </p> <div>(Cited) supplementary material from the manuscript. For more information, please refer to the figure/table legends and the supplementary file descriptions.</div> <p> </p> <div> <div>- add-file-01.pdf</div> <div>- add-file-02-table1-data_overview.tsv</div> <div>- add-file-03-table2-genome_progress.tsv</div> <div>- add-file-04-table3-Pycnognonum_microRNAs.tsv</div> <div>- add-file-05-table4-named_genes.tsv</div> <div>- add-file-06-table5-abdA.tsv</div> <div>- add-file-07-hox_tree.pdf</div> <div>- add-file-08-table6-r2_g3735-Alignment-HitTable.tsv</div> <div>- add-file-09-hro_tree.pdf</div> <div>- add-file-10-irx_tree.pdf</div> <div>- add-file-11-sine_tree.pdf</div> <div>- add-file-12-nk_tree.pdf</div> <div>- add-file-13-dbx.png</div> <div>- add-file-14-alignment.pdf</div> <div>- add-file-15-Plit_COI-alignment_distances.pdf</div> <div>- add-file-16-table7-isoseq.tsv</div> <div>- add-file-17-table8-chelicerate_repeat_content.tsv</div> <div>- add-file-18-table9-arthropod_genomes.tsv</div> <div>- add-file-19-table10-arthropod_repeat_content.tsv</div> <div>- add-file-20-table11-chelicerate_genomes.tsv</div> <div>- add-file-21-gene_analysis.zip</div> <div>- add-file-22-table12-self_synteny.tsv</div> </div> <p> </p> <div>## figures</div> <p> </p> <div>- figs.zip: archive of raw and processed figures for the manuscript in full resolution</div> <p> </p> <div>## analysis</div> <p> </p> <div>### genomic context</div> <p> </p> <div>The broader arthropod/chelicerate context for the _P. litorale_ genome assembly.</div> <p> </p> <div>- araneae.tsv: repeat makeup of published chelicerate assemblies</div> <div>- arthropoda.tsv: genome assembly statistics for arthropod genomes. From NCBI Genomes.</div> <div>- modern_taxids.txt: list of taxonomic IDs for species; made to be submitted to NCBI Taxonomy.</div> <div>- tax_report.txt: the full taxonomic report for each query species. Contains tax IDs for the entire lineage.</div> <div>- total_repeats.tsv: total repeat content of published chelicerate genomes.</div> <p> </p> <div>### Homeobox genes</div> <p> </p> <div>Files concerning the Homeobox gene cluster analysis. Each folder (hro, irx, nkx, sine) contains the</div> <div>candidate sequences from Aase-Remedios et al., the P. litorale sequences that matched, the multiple</div> <div>sequence alignment, the trimmed alignment, and the tree files.</div> <p> </p> <div>Additionally, the hox/ folder contains the analysis done for the AbdA gene, with searches performed</div> <div>against the de-novo assembled transcriptomes (.m8 files).</div> <p> </p> <div>Finally, the r2_g3735/ folder contains the analysis of the r2_3735 gene model, which is found in the</div> <div>Hox cluster area on the P. litorale genome. Sequence searches against NCBI nr and the developmental</div> <div>transcriptomes show that the gene has putative homologs in other taxa and is expressed throughout</div> <div>development.</div> <p> </p> <div>## processed (intermediate) data</div> <p> </p> <div>### 00-kmer-jellyfish.zip</div> <p> </p> <div>k-mer spectra analysis with GenomeScope and GenomeScope2.0</div> <p> </p> <div>### 00-seq-qc.zip</div> <p> </p> <div>quality control output for raw sequencing data (e.g. FastQC output)</div> <p> </p> <div>### 01-assembly</div> <p> </p> <div>- assembly_graph.gfa: Flye output</div> <div>- assembly_graph.gv: Flye output</div> <div>- assembly_info.txt: Flye output</div> <div>- assembly.fasta: Flye output</div> <div>- backmap.hifi.sort.bam.cov-hist.pdf: coverage histogram of the back-mapped PacBio data</div> <div>- backmap.ont.sort.bam.cov-hist.pdf: coverage histogram of the back-mapped ONT data</div> <div>- BUSCO.arthropoda_odb10.txt: BUSCO completeness report (arthropoda_odb10)</div> <div>- BUSCO.metazoa_odb10.txt: BUSCO completeness report (metazoa_odb10)</div> <div>- flye.log: Flye assembler log</div> <div>- quast_report.pdf: assembly QC</div> <p> </p> <div>### 02-scaffold</div> <p> </p> <div>`yahs` output files:</div> <p> </p> <div>- asm_hic.sorted.bam</div> <div>- flye-yahs.fa</div> <div>- yahs.out_scaffolds_final.agp</div> <div>- yahs.out_scaffolds_final.fa.hic</div> <div>- yahs.out_scaffolds_final.fa.assembly</div> <p> </p> <div>Juicebox (manual curating) results:</div> <p> </p> <div>- yahs.out_scaffolds_final.fa.review.assembly</div> <div>- 02-flye-yahs-juicebox.fa</div> <p> </p> <div>GAP `sort_scaffolds` pipeline outputs</div> <p> </p> <div>- 03-flye-yahs-juicebox-merge.fasta</div> <div>- plit_q_0_50000_0.5FracBest_unseen_scaffolds.txt</div> <div>- plit_q_0_50000_0.5FracBest_insertion_stats.tsv</div> <div>- plit_q_0_50000_0.5FracBest_appended_scaffolds.tsv</div> <div>- plit_q_0_50000_0.5FracBest_inserted_scaffolds.tsv</div> <p> </p> <div>### 03-contamination</div> <p> </p> <div>Refer to the [contamination analysis](https://github.com/galicae/plit-genome/blob/main/04-contam/README.md) for details.</div> <p> </p> <div>Decontaminating the draft genome from non-metazoan scaffolds:</div> <p> </p> <div>- plit_q_0_50000_0.5FracBest_output_filtered.fasta: input draft genome</div> <div>- contam_tax.m8: Alignment results of UniRef90 against draft genome (MMseqs2)</div> <div>- scaffolds_taxonomic_distribution.tsv: summary of contam_tax.m8; number of genes from each taxonomic level per scaffold.</div> <div>- scaffolds_taxonomic_distribution_collapsed_vir.tsv: scaffolds with predominantly viral hits</div> <div>- scaffolds_taxonomic_distribution_suspect.tsv: scaffolds whose genes are <90% metazoan</div> <p> </p> <div>Checking for widespread _Metridium_ contamination:</div> <p> </p> <div>- primary_mq30.txt: list of high-quality mapping reads (presumptive "metridial")</div> <div>- metridium_scaffolds.txt_summary: no. of presumptive _Metridium_ reads per draft scaffold</div> <div>- metridium_scaffolds.txt: filtered SAM file with all high-quality "_Metridium_" hits on draft scaffolds</div> <div>- metridium_contigs.sam_summary: no. of presumptive _Metridium_ reads per Flye contig</div> <p> </p> <div>### 04-annotation</div> <p> </p> <div>Repeat analysis with RepeatModeler/RepeatMasker:</div> <p> </p> <div>- draft.fasta.tbl: output of RepeatModeler in tabular form</div> <div>- pb.sam.flagstats: summary of mapping the repeat families to the PacBio data.</div> <div>- pycno-families.fa: output of RepeatModeler - the sequences of the _P. litorale_ repeat families</div> <div>- draft.fasta.out.gff: output of RepeatModeler - repeat locations on the draft genome</div> <p> </p> <div>Protein coding gene annotation:</div> <p> </p> <div>- annot-01-isoseq.gff: GFF file with the gene models proposed using Iso-seq isoforms</div> <div>- annot-01-braker.gff: GFF file with the gene models proposed from round 1 of BRAKER3 using developmental transcriptomes</div> <div>- annot-02-braker.gff3: GFF file with the gene models proposed from round 2 of BRAKER3, using developmental transcriptome reads that weren't used in round 1</div> <div>- annot-03-denovo.gff3: GFF file with the gene models proposed from the de novo transcriptomes</div> <div>- deep_denovo_assemblies.zip: the de-novo assembled transcriptomes from the deeply sequenced developmental time points. Also available on ENA.</div> <p> </p> <div>tRNAscan output</div> <p> </p> <div>- trnascan.bed</div> <div>- trnascan.out</div> <div>- trnascan.fasta</div> <div>- trnascan.stats</div> <p> </p> <div>MirMachine output</div> <p> </p> <div>- Pli_september.PRE.gff: MirMachine output with permissive threshold</div> <div>- Pli_september.PRE-1.gff: MirMachine output with strict threshold</div> <div>- Pli_september.PRE.fasta: predicted miRNA sequences</div> <p> </p> <div>## Results</div> <p> </p> <div>- draft_softmasked.fasta: draft genome with repetitive regions softmasked</div> <div>- draft.fasta: draft genome fasta</div> <div>- hox.gff3: the position of the Hox genes in GFF3 form.</div> <div>- merged_sorted_named_dedup_flagged.gff3: protein-coding gene models from all rounds of annotation after deduplication</div> <div>- transcripts.fa: TransDecoder-extracted putative transcripts</div> <div>- transcripts.fa.transdecoder.pep: TransDecoder predicted peptides</div> <div>- out.emapper.annotations: EggNOG-mapper functional annotation for the predicted peptides</div> <div>- out.emapper.best.annotations: filtered EggNOG-mapper annotation; best hit per gene kept</div> <div>- miRNA.fasta: FASTA sequences of predicted miRNAs</div> <div>- miRNA.lenient.gff: GFF of miRNA positions (permissive MirMachine cutoff)</div> <div>- miRNA.strict.gff: GFF of miRNA positions (strict MirMachine cutoff)</div>
Codebook Motif Explorer Supplementary Dataset
<p>This is the supplementary dataset of the GRECO-BIT/Codebook Motif Explorer (MEX),<br>which is a detailed online catalog of DNA motifs built using a huge collection of experimental data <br>produced by the Codebook Consortium to annotate the binding specificities of human transcription <br>factors, see <a title="MEX preprint" href="https://www.biorxiv.org/content/10.1101/2024.11.11.619379v2">Vorontsov et al. (bioRxiv)</a>.</p> <p>Motif discovery for MEX was performed with multiple software tools, and the resulting motifs were <br>rigorously benchmarked against held-out test data. Here you can find detailed benchmarking results, <br>complete motif sets, and the benchmarking-ready preprocessed experimental data. </p> <p>Further details are provided in README.</p> <p>Note: There are two extra accompanying Zenodo datasets, namely,<br>doi:10.5281/zenodo.8327477 (MEX HT-SELEX data) and doi:10.5281/zenodo.8327970 (MEX GHT-SELEX data).</p> <p> </p> <p><em>Update 2025:</em> replaced files for TFs whose datasets were partially mislabeled in the original upload.</p> <p>Affected TFs: CHCHD3, CPXCR1, MYRFL, PRDM5, TIGD4, TIGD5, TTF1, ZBED5, ZBTB5, ZNF578.</p> <p>Note: PBM and SMS datasets were not affected and the respective files remain the same as in the previous upload.</p> <p>This repository now also provides the set of reference artifact motifs used to filter the MEX results in a variety of commonly accepted formats (TRANSFAC, MEME, JASPAR, plain text).</p> <p>In the last version, we have resolved remaning minor issues with motif metadata and metrics, and included top1-top20 motifs and logos, according to the MEX rankings.</p>
Half of a twin capital with a griffin motif
he capital is considered to be one of the best examples of Romanesque masonry in Poland. The column head was found in 1980 in the courtyard of a baroque monastery and is one of many preserved fragments of the architectural decoration of the Romanesque monastic complex in Tyniec. Column capitals constitute a sizeable group amongst them. Researchers do not agree whether they were originally located in the church or in the cloisters. The capital has the shape of a truncated pyramid turned upside down. The surface of the capital is covered by ornamentation with zoomorphic and plant motifs. On the obverse, there is a representation of a griffin or a dragon with long pointed ears. Out of its mouth emerge vines ending in palmette leaves, among which there appears a winged figure of another animal. The reverse is covered by a composition of three palmette leaves inscribed in a heart-like shape. 4th quarter of the 11th century, Tyniec Museum of the Benedictine Abbey in Tyniec Inventory number: DA/167/2012 Source: Objaverse 1.0 / Sketchfab
Vase with a dance circle motif
ID no.: MHK 4084/III Museum: Historical Museum of the City of Kraków https://muzea.malopolska.pl/en/objects-list/33 Digitalisation: RDW MIC, Małopolska's Virtual Museums project Source: Objaverse 1.0 / Sketchfab
A snuffbox with the motif of a boy
A snuffbox with the motif of a boy sitting on a dragon and a lotus leaf ID no.: MNK VI-8969 Museum: The National Museum in Kraków https://muzea.malopolska.pl/en/objects-list/2485 Digitalisation: Digitalisation: RDW MIC, Virtual Małopolska project Source: Objaverse 1.0 / Sketchfab
Neural network ensembles and FEFF spectra for multi-modal small molecule chemical motif prediction
<p><strong>Data</strong></p> <ul> <li><strong>22-12-05-data</strong>: original molecular XANES data created from <a href="https://doi.org/10.1103/PhysRevResearch.5.013180">Ghose <em>et al.</em></a></li> <li><strong>23-04-26-ml-data</strong>: machine learning-ready data which is prepared in the format required by <a href="https://github.com/matthewcarbone/Crescendo">Crescendo</a>.</li> <li><strong>23-05-03-hp</strong>: hyper-parameter tuning results from 23-04-26-ml-data.</li> <li><strong>23-05-05-ensembles</strong>: ensemble results from 23-04-26-ml-data.</li> <li><strong>23-05-11-ml-data-CUTOFF8</strong>: a special machine learning-ready dataset constructed by a unique partitioning: only molecules with less than or equal to 8 atoms/molecule are used for training/validation, the rest are used for testing.</li> <li><strong>23-12-06_torch_models</strong>: torch only models which can be easily used independently of our ML helper repository, Crescendo. Instead, it can be used with a few lines of code found in multimodal_molecules/core.py, in our <a href="https://github.com/AI-multimodal/multimodal-molecules">GitHub respository</a>.</li> </ul> <p><strong>Funding</strong></p> <p>This research is based upon work supported by the U.S. Department of Energy, Office of Science, Office Basic Energy Sciences, under Award Number FWP PS-030. This research also used theory and computational resources of the Center for Functional Nanomaterials, which is a U.S. Department of Energy Office of Science User Facility, and the Scientific Data and Computing Center, a component of the Computational Science Initiative, at Brookhaven National Laboratory under Contract No. DE-SC0012704.</p>
Intrinsically disordered Prosystemin discloses biologically active repeat motifs
<p>Dataset referred to "Intrinsically disordered Prosystemin discloses biologically active repeat motifs".</p> <p>Abstract: The in-depth studies over the years on the defence barriers by tomato plants have shown that the Systemin peptide controls the response to a wealth of environmental stress agents. This multifaceted stress reaction seems to be related to the intrinsic disorder of its precursor protein, Prosystemin (ProSys). Since latest findings show that ProSys has biological functions besides Systemin sequence, here we wanted to assess if this precursor includes peptide motifs able to trigger stress-related pathways. Candidate peptides were identified in silico and synthesized to test their capacity to trigger defence responses in tomato plants against different biotic stressors. Our results demonstrated that ProSys harbours several repeat motifs which triggered plant immune reactions against pathogens and pest insects. Three of these peptides were detected by mass spectrometry in plants expressing ProSys, demonstrating their effective presence in vivo. These experimental data shed light on unrecognized functions of ProSys, mediated by multiple biologically active sequences which may partly account for the capacity of ProSys to induce defense responses to different stress agents.</p>
Challenges in adjusting scoring matrices when comparing functional motifs with non-standard compositions
<p>This research was funded by the National Science Centre in Poland (grant number 2021/41/N/ST6/01919)</p>
DNA large fragment deleting by compact, sequence-motif-free and specific TaqTth-hpRNA assisted with the microhomology-mediated end joining pathway
<p><span>A DNA editing tool TaqTth-hpRNA was developed in this study, composed of a compact recombinant TaqTth nuclease (832 aa) and a simple hairpin-RNA guiding probe (hpRNA). <em>In vitro</em> biochemical studies showed the TaqTth-hpRNA efficiently cleaves artificially synthesized ssDNA without stringent sequence motif like PAM. It can also cleave the genomic DNA of <em>E. coli</em> with ~80% efficiency. The TaqTth-hpRNA cleavage of genomic DNA in mammalian cells generated products with large fragment deletions mediated by the microhomology-mediated end joining (MMEJ) pathway. In addition, the cleavage was sensitive to mismatches in targeted regions, which was applied to specific damage of the <em>APP<sup>lon</sup></em> mutation in Alzheimer’s disease without disrupting the <em>APP<sup>wt</sup></em> locus. It is worth mentioning that the <em>APP<sup>lon</sup></em> sequence has only one base difference from that of <em>APP<sup>wt</sup></em>. The characteristics of small size, no PAM requirement, high specificity, and large deletion products make the TaqTth-hpRNA a potential therapeutic strategy for treating autosomal dominant disorders in the future.</span></p>
vAMoS: eVent Abstraction via Motifs Search - Appendix
<p>The repository contains the Appendix for the paper vAMoS: eVent Abstraction via Motifs Search.</p> <p>Appendix 1 contains the models of the patterns to be identified, that is the list of Ps.<br> Appendix 2 contains all the information regarding the experiments conducted, such as algorithms configuration and results. The experiments conducted concern the application of the algorithms both on synthetic and real datasets.<br> Appendix 3 contains the list of process models derived by the algorithms during the evaluation on a real dataset (qualitative).</p> <p>The XES files are the event logs of the P patterns used in the tests.</p>
FASST Structure Database files for "Tertiary motifs as building blocks for the design of protein-binding peptides"
<p>FASST Database files for use in the <a href="https://github.com/swanss/peptide_design">peptide design</a> pipeline.</p> <p>A complete list of structures provided in the databases is provided in the supplementary information of the Protein Science article.</p> <p>Singlechain structures: <a href="https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fpro.4322&file=pro4322-sup-0004-TableS6.txt">pro4322-sup-0004-TableS6.txt</a> (format: PDBID_CHAINID)</p> <p>Multichain structures: <a href="https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fpro.4322&file=pro4322-sup-0005-TableS7.txt">pro4322-sup-0005-TableS7.txt</a> (format: PDBID)</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.