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ShareScore release 0.9.0
Dataset results
650 results for “multiomics”
Early Identification and Prognosis Prediction of Sepsis Through Multiomics
ClinicalTrials.gov study NCT05305469. IPD Sharing: NO. Countries: 1. Publications: 1.
Multiomics and Imaging-based Assessment of Vulnerable Coronary Plaques in Acute Coronary Syndromes
ClinicalTrials.gov study NCT03391908. IPD Sharing: YES. Countries: 1. Publications: 3.
Optimization of Cyclosporin in Atopic Dermatitis Through Multiomic Predictive Models of Treatment Response
ClinicalTrials.gov study NCT05692843. IPD Sharing: YES. Countries: 1. Publications: 1.
Data from: An antagonistic epigenetic mechanism regulating gene expression in pollen revealed through single-nucleus multiomics
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Raw and Intermediate data associated with "Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multiomics integration"
<p>Data and intermediate structures for "Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multiomics integration"</p> <p>The project involves the comparison of gene expression data and estimated flux across over 44 million models of HMO biosynthesis. Here we provide intermediate objects to simplify the task of reproducing our calculations.</p> <ul> <li>Raw/Input data (raw.zip); data_HMO.xlsx is the central dataset including HMO concentrations and gene expression data. Other files are .csv exports from data_HMO.xlsx to circumvent a temporary bug in the xlsx reading package. They should not differ from the original file and are provided to facilitate code readability.</li> <li>(models_split.zip) HMO biosynthesis models generated through network generation ( /code/1.flux/A) and enumeration (/code/1.flux/B)</li> <li>(scores_spllit.zip) Correlation (R) and correlation p-values (P) between estimated flux and observed gene expression for corresponding genes (/code/1.flux/C)</li> <li>(big_mat.<bin/desc>.zip) Intermediate matrixes containing gene-linkage scores, models score, model classifications and other information generated/used by the Flux-Expression Comparision code (/code/3.flux_expression)</li> </ul>
Rapid phagosome isolation enables unbiased multiomic analysis of human microglia phagosomes 2
<p><span>Proteomic data of iPSC-derived microglia phagosomes and controls</span></p>
Unified Cross-modality Integration and Inference of Single-Cell Multiomics Data with Deep Contrastive Learning
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Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases
<p>BPNet models for scoring SNPs in cell types of the human retina</p>
Single-cell multiomics analysis reveals regulatory programs in clear cell renal cell carcinoma
<p>Here, we performed an integrative analysis of scRNA-seq and scATAC-seq data from four ccRCC patients and aimed to identify the key regulatory molecules that mediate tumor development and manipulate the function of immune cells.</p>
Aligned Cross-modal Integration and Regulatory Heterogeneity Characterization of Single-Cell Multiomic Data with Deep Contrastive Learning
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Using Multiomics to Define Mechanisms of Rhinovirus-induced Chronic Obstructive Pulmonary Disease Exacerbations to Develop Novel Therapies and Therapeutic Targets
ClinicalTrials.gov study NCT07112235. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Single cell multiomics guided mechanistic understanding of Fontan-associated liver disease
GEO Series GSE223843. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
KLF5 modulates epigenetic modifications driving human pancreatic ductal adenocarcinoma metastasis [Multiome]
GEO Series GSE290274. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-nucleus multiomic mapping of m6A methylome and transcriptome in native populations of cells with sn-m6A-CT
GEO Series GSE217256. Homo sapiens; Mus musculus. 36 samples. Type: Other; Expression profiling by high throughput sequencing.
Single-cell multiome profiling reveals pancreas cell type-specific gene regulatory programs of type 1 diabetes progression [multiome]
GEO Series GSE273594. Homo sapiens. 8 samples. Type: Other.
Transcription factor networks disproportionately enrich for heritability of blood cell phenotypes [10x ATAC + GEX Multiome]
GEO Series GSE274113. Homo sapiens. 42 samples. Type: Other.
Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging [snATAC-Seq] [10X Multiome]
GEO Series GSE294772. Mus musculus. 142 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Third-party reanalysis.
Tagger–a Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice [Ago-Tag-sRNA-seq]
GEO Series GSE123418. Mus musculus. 21 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Multiomic analysis reveals decidual-specific transcriptional programing of MAIT cells
GEO Series GSE183421. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Maternal Stress Triggers Early-Life Eczema via Fetal Mast Cell Reprogramming [10x Genomics Multiome ATAC + Gene Expression]
GEO Series GSE290848. Mus musculus. 8 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.