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141 results for “niche partitioning”
Silviculture simplifies anuran–prey networks and increases niche partitioning in the Brazilian Atlantic Forest
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Belowground niche partitioning is maintained under extreme drought
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Niche partitioning overrides interspecific competition to determine plant species distributions along a nutrient gradient
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Data from: Sexual dimorphism does not translate into foraging or trophic niche partitioning in Peruvian boobies (Sula variegata)
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Data from: Nitrogen niche partitioning between tropical legumes and grasses conditionally weakens under elevated CO2
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Generalised bumblebee-flower interactions demonstrate weak floral niche partitioning despite a high bee diversity
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Data for the article entitled: Linking sexual size dimorphism to trophic niche partitioning in a generalist predator
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Data for: Seasonally mediated niche partitioning in a vertically compressed pelagic predator guild
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Differential nutrient limitation and tree height control leaf physiology, supporting niche partitioning in tropical dipterocarp forests
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Niche partitioning among three snail-eating snakes revealed by dentition asymmetry and prey specialisation
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Fig. 4 in Growing up Tyrannosaurus rex: Osteohistology refutes the pygmy "Nanotyrannus" and supports ontogenetic niche partitioning in juvenile Tyrannosaurus
Fig. 4. Examples of variable CGM (blue lines) spacing in tyrannosaurids examined for this study. (A) The variability of CGM spacing in the femur of BMRP 2002.4.1 and (B) the tibia of BMRP 2006.4.4 may imply that these individuals were approaching asymptotic body length. However, CGMs within the innermost cortices of much larger T. rex specimens (C) USNM PAL 555000 and (D) MOR 1128 demonstrate that the CGM spacing is not a reliable indicator of relative maturity status.All panels are shown in transverse thin section.
Fig. 2 in Growing up Tyrannosaurus rex: Osteohistology refutes the pygmy "Nanotyrannus" and supports ontogenetic niche partitioning in juvenile Tyrannosaurus
Fig. 2. Tibia histology of tyrannosaurid specimens BMRP 2002.4.1 and BMRP 2006.4.4. (A) Transverse mid-cortex thin section of BMRP 2002.4.1. Longitudinal POs are evident, and PPL emphasizes osteocyte lacuna density and variability in shape within laminae. CPL reveals varying birefringence associated with bone fiber orientation, but with a weak arrangement of fibers parallel to the transverse plane of section. Many POs are composed of highly isotropic fibers with rounded osteocyte lacunae. (B) Longitudinal thin section of the mid-cortex of BMRP 2002.4.1. Vascular canals appear as near-vertical, dark columns. Adjacent to the vascular canals, the POs contain laterally compressed osteocyte lacunae. CPL demonstrates that the laterally compressed osteocyte lacunae of POs are embedded within a uniformly birefringent matrix (anisotropic), indicating that the lamellae of POs are LP. Osteocyte lacunae orientation varies in the thin laminae between POs. In CPL, the laminae are weakly isotropic, corresponding to the weak arrangement of parallel fibers in transverse section. (C) In transverse thin section, the periosteal surface of BMRP 2006.4.4 on the anterior side consists of reticular POs within laminae of highly isotropic, woven tissue. (D) Within the anterior and anteromedial innermost cortex of BMRP 2006.4.4, in transverse thin section, six closely spaced LAGs are visible interstitially. Blue lines highlight the LAG trajectories.
Fig. 1 in Growing up Tyrannosaurus rex: Osteohistology refutes the pygmy "Nanotyrannus" and supports ontogenetic niche partitioning in juvenile Tyrannosaurus
Fig. 1. Femur histology of tyrannosaurid specimens BMRP 2002.4.1 and BMRP 2006.4.4. (A) Mid-cortex of the transverse thin section of BMRP 2002.4.1. Plane-polarized light (PPL) emphasizes osteocyte lacuna density and variability in shape within the laminae, as well as longitudinal primary osteons. In CPL, there is a weak preferred fiber arrangement parallel to the transverse plane of section reflected by regional birefringence. Many primary osteons (POs) have uniformly isotropic fibers with rounded osteocyte lacunae. (B) Mid-cortex of the transverse thin section of BMRP 2006.4.4. Osteocyte lacuna density and variability in shape within the laminae are evident in PPL. CPL reveals varying birefringence associated with bone fiber orientation, but there is a weak preferred fiber arrangement parallel to the transverse plane of section reflected by regional birefringence. Many POs are composed of uniformly isotropic fibers with rounded osteocyte lacunae. (C) Longitudinal section of the mid-cortex of BMRP 2006.4.4. Vascular canals appear as near-vertical, thin, dark columns. As in the transverse section, the primary laminae between POs contain variably arranged osteocyte lacunae. In CPL, the laminae are weakly isotropic (I), corresponding to the poorly organized parallel orientation of fibers in the transverse plane. The laterally compressed osteocyte lacunae in POs are embedded within a uniformly birefringent [anisotropic (AN)] matrix in CPL, indicating that the PO lamellae are longitudinally oriented parallel-fibered bone (LP). (D) On the posteromedial side of the transverse section of BMRP 2006.4.4, there is a parallel-fibered annulus located at the periosteal surface (thickness indicated with blue line). Photographed in CPL. (E) In the transverse section on the posterolateral side, the annulus shown in (D) (blue lines) is overlain by highly isotropic woven-fibered laminae.
Fig. 3 in Growing up Tyrannosaurus rex: Osteohistology refutes the pygmy "Nanotyrannus" and supports ontogenetic niche partitioning in juvenile Tyrannosaurus
Fig. 3. The presence of an EFS at the periosteal surface of a long bone indicates skeletal maturity, while the absence of an EFS indicates that the bone is still growing at the time of death. (A) An EFS composed of tightly stacked birefringent LAGs (between blue arrowheads) at the periosteal surface of an Alligator mississippiensis. (B) The EFS (between blue arrowheads) in an ostrich (struthio camelus) is made of nearly avascular, birefringent parallel-fibered to lamellar primary tissue. (C) No EFS is present at the periosteal surface of the femur of BMRP 2002.4.1, (D) the tibia of BMRP 2002.4.1, (E) the femur of BMRP 2006.4.4, or (F) the tibia of BMRP 2006.4.4. All panels are shown in transverse thin section, with CPL.
Data from: Niche partitioning between river shark species is driven by seasonal fluctuations in environmental salinity
<ol> <li>Tropical rivers and estuaries are highly dynamic environments, where environmental conditions change dramatically over spatial and temporal scales. This creates both physiological and ecological challenges for euryhaline elasmobranchs, where fluctuations in salinity can impact not only osmoregulatory function, but also the ability to find and acquire prey.</li> <li>We investigated how spatial and temporal variation in environmental salinity influences physiological homeostasis, habitat utilisation, and migration timing in two euryhaline carcharhinid sharks within a tropical river in northern Australia. Neonate and juvenile bull sharks <i>Carcharhinus leucas</i> and speartooth sharks <i>Glyphis glyphis </i>were tracked over a four-year period using implanted acoustic tags and an array of hydrophone receivers. Tissue samples were also collected from captured sharks and analysed for interspecific differences in plasma osmolarity, urea and electrolyte (Na<sup>+ </sup>and K<sup>+</sup>) concentrations, and the stable isotopes δ<sup>13</sup>C and δ<sup>15</sup>N.</li> <li>We discovered that immature <i>C. leucas</i> and <i>G. glyphis</i> segregate spatially along a salinity gradient between September and December, where the mean volume of intersection between species dropped as low as 0.01. While<i> G. glyphis</i> used higher salinity environments (mean salinity = 19.22) located between 30 and 70 km from the mouth of the estuary, <i>C. leucas</i> occupied freshwater reaches (mean salinity = 1.98) between 60 and 110 km upstream. Plasma osmolarities of both species were always hyperosmotic to the environment, with electrolyte concentrations maintained within a narrow range independent of environmental osmolarities. At the onset of the wet season, both <i>C. leucas</i> and <i>G. glyphis</i> undertook a coordinated downstream migration towards the lower estuary before returning upstream.</li> <li> <i>C. leucas</i> blood tissues were more enriched in δ<sup>15</sup>N and δ<sup>13</sup>C than samples collected from similar size <i>G. glyphis</i>, suggesting that these species not only spatially segregate within low salinity habitats but also prey on different dietary resources. Furthermore, a loss of enriched isotopic values in fin tissue with increasing body length provides further support for marine-use by adult sharks in conjunction with dependence on rivers as important nursery habitat. Our results illustrate the importance of long-term integrative studies into resource competition and the significance of discrete brackish habitats for threatened euryhaline elasmobranchs. </li> </ol>
Data from: Genetic and genomic evidence of niche partitioning and adaptive radiation in mountain pine beetle fungal symbionts
Bark beetles form multipartite symbiotic associations with blue stain fungi (Ophiostomatales, Ascomycota). These fungal symbionts play an important role during the beetle's life cycle by providing nutritional supplementation, overcoming tree defences and modifying host tissues to favour brood development. The maintenance of stable multipartite symbioses with seemingly less competitive symbionts in similar habitats is of fundamental interest to ecology and evolution. We tested the hypothesis that the coexistence of three fungal species associated with the mountain pine beetle is the result of niche partitioning and adaptive radiation using SNP genotyping coupled with genotype–environment association analysis and phenotypic characterization of growth rate under different temperatures. We found that genetic variation and population structure within each species is best explained by distinct spatial and environmental variables. We observed both common (temperature seasonality and the host species) and distinct (drought, cold stress, precipitation) environmental and spatial factors that shaped the genomes of these fungi resulting in contrasting outcomes. Phenotypic intraspecific variations in Grosmannia clavigera and Leptographium longiclavatum, together with high heritability, suggest potential for adaptive selection in these species. By contrast, Ophiostoma montium displayed narrower intraspecific variation but greater tolerance to extreme high temperatures. Our study highlights unique phenotypic and genotypic characteristics in these symbionts that are consistent with our hypothesis. By maintaining this multipartite relationship, the bark beetles have a greater likelihood of obtaining the benefits afforded by the fungi and reduce the risk of being left aposymbiotic. Complementarity among species could facilitate colonization of new habitats and survival under adverse conditions.
Data from: Towards a mechanistic understanding of thermal niche partitioning
We develop a theoretical framework to elucidate the mechanistic basis of thermal niche partitioning in ectotherms. Using a food web module of two consumers competing for a biotic resource, we investigate how temperature effects on species' attack and mortality rates scale up to population-level outcomes of coexistence and exclusion. We find that species' differences in competitive effects arise from asymmetries generated by the non-linear temperature response of mortality: cold-adapted species experience stronger intra-specific competition than warm-adapted species; they also exert weaker competition on, and experience stronger competition from, warm-adapted species. These asymmetries become greater as seasonal fluctuations increase, generating latitudinal variation in coexistence and priority effects. Characterizing species' thermal niches in terms of mechanistic descriptions of trait responses allows for testable predictions about population-level competitive outcomes based solely on three fundamental, and easily measurable, quantities: attack rate optima, response breadths and temperature sensitivity of mortality. We test our predictions with data from an insect host-parasitoid community. By quantifying the three basic quantities we predict that priority effects cannot occur, which is borne out by population-level experiments showing that the outcome of competition does not depend on initial conditions. More broadly, our framework can predict the conditions under which exotic invasive species can exclude, or coexist with, native biota, and the effects of climate warming on competitive communities across latitudinal gradients.
Data from: Experimental evidence for fundamental, and not realised, niche partitioning in a plant-herbivore community interaction network
Patterns of niche partitioning can result from local ecological interactions (e.g. interspecific competition) occurring within a contemporary time frame (realised niche partitioning). Alternatively they may represent the end-product of historical processes acting over long time frames (fundamental niche partitioning). Niche partitioning is often detected by analysing patterns of resource use within communities, but experiments are rarely conducted to test whether patterns of non-overlapping resource use reflect realised or fundamental niche partitioning. We studied a community of restio leafhoppers from the genus Cephalelus, and their host plants, the Restionaceae (restios). We used network and experimental approaches to determine whether network modularity (a measure of niche partitioning within local communities) reflects fundamental or realised niche partitioning. Using a weighted modularity index for two party networks (e.g. insect - plant) we determined whether the network of this community is modular (i.e. consists of groups of species interacting strongly, with weak interactions between groups). We also aimed to identify specific Cephalelus - restio modules (groups). Using knowledge of module membership to design experiments, we tested whether Cephalelus species from two different modules, C. uncinatus and C. pickeri, prefer and perform better on restios from their own modules versus restios from other modules. These experiments were performed under controlled conditions, eliminating the influences of competition and predation on host choices. The Cephalelus – restio community was modular, implying niche partitioning. Cephalelus also preferred and performed better on restios from their own modules in the absence of local contemporary factors. Most niche partitioning in the investigated Cephalelus community, is not caused by local interactions, and thus host use patterns represent fundamental niches. Our findings highlight the importance of understanding local community structure in the light of processes extrinsic to the local community context.
Data from: Rehabilitating the cyanobacteria – niche partitioning, resource use efficiency, and phytoplankton community structure during diazotrophic cyanobacterial blooms
1. Blooms of nitrogen-fixing cyanobacteria are recurrent phenomena in marine and freshwater habitats, and their supplying role in aquatic biogeochemical cycles is generally considered vital. The objective of this study is to analyze if an increasing proportion of nitrogen-fixing cyanobacteria affects (i) the composition of the non-diazotrophic component of ambient phytoplankton communities, and (ii) resource use efficiency (RUE; ratio of chl a to total nutrients) – an important ecosystem function. We hypothesize that diazotrophs increase community P use, and decrease N use efficiencies, as new N is brought into the system, relaxing N, and concomitantly aggravating P limitation. We test this by analyzing an extensive dataset from the Baltic Sea (> 3700 quantitative phytoplankton samples), known to harbor conspicuous and recurrent blooms of Nodularia spumigena and Aphanizomenon sp. 2. System-level phosphorus use efficiency (RUEP) was positively related with high proportion of diazotrophic cyanobacteria, suggesting aggravation of phosphorus limitation. However, concomitant decrease of nitrogen use efficiency (RUEN) was not observed. Nodularia spumigena, a dominant diazotroph and a notorious toxin producer, had a significantly stronger relationship with RUEP, compared to the competing non-toxic Aphanizomenon sp., confirming niche differentiation in P acquisition strategies between the major bloom-forming cyanobacterial species in the Baltic Sea. Nodularia occurrences were associated with stronger temperature stratification in more offshore environments, indicating higher reliance on in situ P regeneration. 3. By using constrained and unconstrained ordination, permutational multivariate analysis of variance, and local similarity analysis, we show that diazotrophic cyanobacteria explained no more than a few percent of the ambient phytoplankton community variation. The analyses furthermore yielded rather evenly distributed negative and positive effects on individual co-occurring phytoplankton taxa, with no obvious phylogenetic or functional trait-based patterns. 4. Synthesis. Our study reveals that despite the widely acknowledged noxious impacts of cyanobacterial blooms, the overall effect on phytoplankton community structure is minor. There are no predominantly positive or negative associations with ambient phytoplankton species. Species-specific niche differences in cyanobacterial resource acquisition affect important ecosystem functions, like biomass production per unit limiting resource.
Data from: Isotopic niche partitioning between two apex predators over time
1. Stable isotope analyses have become an important tool in reconstructing diets, analyzing resource use patterns, elucidating trophic relations among predators and understanding the structure of food webs. 2. Here, we use stable carbon and nitrogen isotope ratios in bone collagen to reconstruct and compare the isotopic niches of adult South American fur seals (Arctocephalus australis); n = 86) and sea lions (Otaria flavescens); n = 49) –two otariid species with marked morphological differences– in the Río de la Plata estuary (Argentina - Uruguay) and the adjacent Atlantic Ocean during the second half of the 20th century and the beginning of the 21st century. Samples from the middle Holocene (n = 7 fur seals and n = 5 sea lions) are also included in order to provide a reference point for characterizing resource partitioning before major anthropogenic modifications of the environment. 3. We found that the South American fur seals and South American sea lions had distinct isotopic niches during the middle Holocene. Isotopic niche segregation was similar at the beginning of the second half of the 20th century, but has diminished over time. 4. The progressive convergence of the isotopic niches of these two otariids during the second half of the 20th century and the beginning of the 21st century is most likely due to the increased reliance of South American fur seals on demersal prey. 5. This recent dietary change of South American fur seals can be explained by at least two non-mutually exclusive mechanisms: (i) the decrease in the abundance of sympatric South American sea lions as a consequence of small colony size and high pup mortality resulting from commercial sealing; and (ii) the decrease in the average size of demersal fishes due to intense fishing of the larger class sizes, which may have increased their accessibility to those eared seals with a smaller mouth gape, i.e., South American fur seals of both sexes and female South American sea lions.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.