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73 results for “parameter optimization”
MySQL dump for finding optimal parameters for data augmentation techniques in publication "Leveraging Data Augmentation for Process Information Extraction"
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Models, scripts, simulated data, and results from the article "Evaluation and comparison of methods for neuronal parameter optimization using the Neuroptimus software framework."
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Data from: Ultraconserved element (UCE) probe set design: base genome and initial design parameters critical for optimization
Targeted capture and enrichment approaches have proven effective for phylogenetic study. Ultraconserved elements (UCEs) in particular have exhibited great utility for phylogenomic analyses, with the software package phyluce being among the most utilized pipelines for UCE phylogenomics, including probe design. Despite the success of UCEs, it is becoming increasing apparent that diverse lineages require probe sets tailored to focal taxa in order to improve locus recovery. However, factors affecting probe design and methods for optimizing probe sets to focal taxa remain underexplored. Here, we use newly available beetle (Coleoptera) genomic resources to investigate factors affecting UCE probe set design using phyluce. In particular, we explore the effects of stringency during initial design steps, as well as base genome choice on resulting probe sets and locus recovery. We found that both base genome choice and initial bait design stringency parameters greatly alter the number of resultant probes included in final probe sets and strongly affect the number of loci detected and recovered during in silico testing of these probe sets. In addition, we identify attributes of base genomes that correlated with high performance in probe design. Ultimately, we provide a recommended workflow for using Phyluce to design an optimized UCE probe set that will work across a targeted lineage, and use our findings to develop a new, open‐source UCE probe set for beetles of the suborder Adephaga.
Model output after parameter optimization for NEMO4.0-SI3
<p>Using the default configuration of NEMO4.0-SI3 (version 4.0.7 revision 15731), the 2003-2009 seasonal mean Antarctic sea ice concentration budget was obtained after adjusting the following three parameters: rn_pstar=3.298e+04, rn_cio=0.006094, Cd_ice=0.0009563.</p> <p>Both files are in npz format and can be read using python. ''Benchmark_budget_1to12_NEMO4-SI3-optim.npz'' file contains 4 fields: 'dadt_seasonal', 'adv_seasonal', 'div_seasonal' and 'res_seasonal', each of size [145, 145, 4], corresponding to lon, lat and season. The meaning of each field can be found in Nie et al. (2023), noting that here is the seasonal average for the years 2003-2009.</p> <p>The ''Klonlat.npz'' file contains 3 fields, 'Klon' (longitude), 'Klat' (latitude) and 'K_A' (grid area), all of size [145, 145].</p>
Optimizing Parameters for Long-pulsed Nd:YAG Laser for Reducing Hair Shaft Diameter
ClinicalTrials.gov study NCT03394235. IPD Sharing: NO. Countries: 1. Publications: 0.
Data from: Ultraconserved element (UCE) probe set design: base genome and initial design parameters critical for optimization
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Data from: Ceramsite production from sediment in Beian River: characterization and parameter optimization
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Data from: Optimization of parameters in cylindrical and surface grinding for improved surface finish
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NACP VPRM NEE Parameters Optimized to North American Flux Tower Sites, 2000-2006
This data set provides Vegetation Photosynthesis Respiration Model (VPRM) net ecosystem exchange (NEE) parameter values optimized to 65 flux tower sites across North America. The parameters include the basal rate of ecosystem respiration (beta), the slope of respiration with respect to temperature (alpha), light-use efficiency (LUE) (lambda), and LUE curve half-saturation (PAR_0). Observed eddy covariance data from the 65 tower sites, locally observed temperature and photosynthetically active radiation (PAR) along with satellite-derived phenology and moisture were used as input data to optimize the VPRM parameters for the 65 sites. The data are provided by individual site, plant functional types (PFTs), and all sites together, and as monthly, annual, and all available data. The data are for the conterminous USA, Alaska, and Canada for the period 2000 to 2006.
Systematic Evaluation of crRNA Design Parameters for Optimized Cas13d-Mediated RNA Targeting in Chicken Cells
GEO Series GSE305666. Gallus gallus. 12 samples. Type: Expression profiling by high throughput sequencing.
Effects Of Optimized Blinking Training on Visual Function and Tear Film Parameters in Individuals With CVS
ClinicalTrials.gov study NCT06913816. IPD Sharing: NO. Countries: 1. Publications: 0.
Does Echocardiographically Guided Ventriculo-Ventricular Optimization Yield a Sustained Improvement in Echocardiographic Parameters in Cardiac Resynchronization Therapy Patients? (DEVISE CRT)
ClinicalTrials.gov study NCT00737490. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Optimization of Spectroscopic Imaging Parameters and Procedures for Prostate at 3 Tesla Using an External Probe
ClinicalTrials.gov study NCT00314522. IPD Sharing: Not stated. Countries: 1. Publications: 0.
The Efficacy of MDI Treatment With an Optimization Algorithm Adjusting Basal-Bolus Parameters in Children and Adolescents With Type 1 Diabetes at a Diabetes Camp
ClinicalTrials.gov study NCT03764280. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Optimization of the Parameters of Vagal Nerve Stimulation
ClinicalTrials.gov study NCT04693221. IPD Sharing: NO. Countries: 1. Publications: 0.
Optimization of Deep Brain Stimulation Parameters in Patients With Medically Refractory Epilepsy
ClinicalTrials.gov study NCT05493722. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Optimization of the Anesthetic Regimen Using the SmartPilot® System and Influence on Different Outcome Parameters - a Pilot Study.
ClinicalTrials.gov study NCT01694901. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Optimization of Spectroscopic Imaging Parameters and Procedures for Prostate at 3 Tesla Using an External Probe
ClinicalTrials.gov study NCT00314535. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Effect of Perioperative Hemodynamic Optimization on the Immune Function Parameters of Peripheral Blood Monocytes After Cardiac Surgery
ClinicalTrials.gov study NCT01184430. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Exploring Optimal Photographic Parameters for Standardized Facial Aesthetics Analysis
ClinicalTrials.gov study NCT07052643. IPD Sharing: NO. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.