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73
datasets available to search
ShareScore release 0.9.0
Dataset results
73 results for “pathogen detection”
Data from: Design- and model-based strategies for detecting and quantifying an amphibian pathogen in environmental samples
Open the record for dataset details and reuse information.
Data from: Metagenomic sequencing detects respiratory pathogens in hematopoietic cellular transplant patients
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Validation of an eDNA-based method for the detection of wildlife pathogens in water
Open the record for dataset details and reuse information.
Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection [RNA-seq]
GEO Series GSE153521. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Gene coexpression network and community detection analyses of CA3 trascriptome reveal distinct pathogenic and compensatory pathways in early and late onset febrile forms of temporal lobe epilepsy
GEO Series GSE57585. Homo sapiens. 14 samples. Type: Expression profiling by array.
Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection [ATAC-seq]
GEO Series GSE153520. Homo sapiens. 76 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Optimization and Clinical Validation of a Pathogen Detection Microarray
GEO Series GSE7779. dengue virus type 1; Viruses; Severe acute respiratory syndrome-related coronavirus. 40 samples. Type: Expression profiling by array.
Data from: Rapid and accurate detection of urinary pathogens by mobile IMS-based electronic nose: a proof-of-principle study
Urinary tract infection (UTI) is a common disease with significant morbidity and economic burden, accounting for a significant part of the workload in clinical microbiology laboratories. Current clinical chemisty point-of-care diagnostics rely on imperfect dipstick analysis which only provides indirect and insensitive evidence of urinary bacterial pathogens. An electronic nose (eNose) is a handheld device mimicking mammalian olfaction that potentially offers affordable and rapid analysis of samples without preparation at athmospheric pressure. In this study we demonstrate the applicability of ion mobility spectrometry (IMS) –based eNose to discriminate the most common UTI pathogens from gaseous headspace of culture plates rapidly and without sample preparation. We gathered a total of 101 culture samples containing four most common UTI bacteries: E. coli, S. saprophyticus, E. faecalis, Klebsiella spp and sterile culture plates. The samples were analyzed using ChemPro 100i device, consisting of IMS cell and six semiconductor sensors. Data analysis was conducted by linear discriminant analysis (LDA) and logistic regression (LR). The results were validated by leave-one-out and 5-fold cross validation analysis. In discrimination of sterile and bacterial samples sensitivity of 95% and specificity of 97% were achieved. The bacterial species were identified with sensitivity of 95% and specificity of 96% using eNose as compared to urine bacterial cultures. In conclusion: These findings strongly demonstrate the ability of our eNose to discriminate bacterial cultures and provides a proof of principle to use this method in urinanalysis of UTI.
Emerging Saccharomycotina yeast pathogens: Detection and susceptibility profiles
<p>This dataset includes the Supplementary material of the PhD thesis titled:</p> <p><strong>Emerging Saccharomycotina yeast pathogens: Detection and susceptibility profiles</strong></p> <p>by Aimilia Aikaterini Stavrou.</p>
T2MR PCR Detection of ESKAPE Pathogens in Patients With Pyogenic Spondylodiscitis and Infective Endocarditis
ClinicalTrials.gov study NCT05644990. IPD Sharing: NO. Countries: 1. Publications: 0.
Pathogen Detection and Community Acquired Pneumonia
ClinicalTrials.gov study NCT02880384. IPD Sharing: NO. Countries: 1. Publications: 0.
Investigation of the Detection Rate of Pathogenic Viruses in the Feces of Individuals With Non-gastrointestinal Infections
ClinicalTrials.gov study NCT06367647. IPD Sharing: NO. Countries: 1. Publications: 0.
Pathogenic Bordetella Rapid Detection
ClinicalTrials.gov study NCT04535505. IPD Sharing: NO. Countries: 1. Publications: 0.
Rapid Detection of Airway Pathogens for Lung Transplantation
ClinicalTrials.gov study NCT03933878. IPD Sharing: NO. Countries: 1. Publications: 0.
Evaluation of NGS for Detection and Follow-up of Fungal Pathogens in Immunocompromised Pediatric Patients
ClinicalTrials.gov study NCT03262584. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Value of the LightCycler® SeptiFast Test MGRADE for the Pathogen Detection in Neutropenic Hematological Patients
ClinicalTrials.gov study NCT01114165. IPD Sharing: Not stated. Countries: 1. Publications: 0.
mNGS for Detection of Pathogens for Pulmonary Infection
ClinicalTrials.gov study NCT03798925. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Impact of Rapid Pathogen Detection in ICU Patients With Suspected Pneumonia on Antimicrobial Therapy
ClinicalTrials.gov study NCT06478953. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Pathogen Detection in Infectious Uveitis
ClinicalTrials.gov study NCT04521673. IPD Sharing: YES. Countries: 1. Publications: 0.
Detect Novel Pathogens and Characterize Emerging Infections
ClinicalTrials.gov study NCT01979705. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.