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18,140 results for “phylogenetic”
Phlorest phylogeny derived from Michael et al. 2015 'A Bayesian Phylogenetic Classification of Tupi-Guarani'
<p>Cite the source of the dataset as:</p> <blockquote> <p>Michael L, Chousou-Polydouri N, Bartolomei K, Donnelly E, Wauters V, Meira S & O'Hagan Z. 2015. A Bayesian Phylogenetic Classification of Tupi-Guarani. LIAMES 15(2):1–36.</p> </blockquote>
Stachewicz et al. 2021: Trait correlation, phylogenetic signal in Carabidae morphology (repackaging of occurrences published by the NEON Biorepository Data Portal)
Stachewicz JD, Fountain-Jones NM, Koontz A, Woolf H, Pearse WD, Gallinat AS. 2021. Strong trait correlation and phylogenetic signal in North American ground beetle (Carabidae) morphology bioRxiv 02.12.431029; doi: https://doi.org/10.1101/2021.02.12.431029 Many NEON samples and specimens used in this work resulted from NEON prototype data and will not be archived in the Biorepository. See the appendices in the above linked article for a full list of NEON samples and specimens and their associated collection data. Additionally, see appendices of above linked article for specimen-level morphological trait measurements and genetic sequence data.
Fig. 4 in A new species of Characidium (Characiformes: Crenuchidae) from coastal basins in the Atlantic Rainforest of eastern Brazil, with phylogenetic and phylogeographic insights into the Characidium alipioi species group
Fig. 4. Fast flowing stream, type locality of Characidium cricarense, at Cachoeira do Inferno rapids in rio Cricaré, São Mateus, ES, Brazil. GPS coordinates: 18°42'24.5"S 40°16'7.2"W.
Fig. 1 in Multiloci analyses suggest synonymy among Rhomboplites, Ocyurus and Lutjanus and reveal the phylogenetic position of Lutjanus alexandrei (Lutjanidae: Perciformes)
Fig. 1. Phylogenetic relationships in Lutjaninae species from the Western Atlantic estimated by Bayesian (BI), maximum likelihood (ML) and a Species Tre analyses inferences based on a data matrix (4.4 kb) comprising mitochondrial (16S rRNA, COI, cyt b, and ND-4) and nuclear (Rhodopsin, TMO4C4 and RAG-1) markers. The BI topology is presented with the posterior probability (BI and Species Tree) and bootstrap (ML) values. The letters in the nodes refer to the clades discussed in the text.
Figs 274‒288. 274–279 ‒ male sternite 8 in Comparative genitalic morphology in ten genera of thread-legged bugs of the tribe Metapterini, and its phylogenetic importance (Hemiptera: Heteroptera: Reduviidae)
Figs 274‒288. 274–279 ‒ male sternite 8 (S8): 274–276 ‒ ventral view, 277‒279 ‒ lateral view; 280‒288 ‒ pygophore: 280‒282 ‒ dorsal view, 283‒285 ‒ lateral view, 286‒288 ‒ ventral view. 274, 277, 280, 283, 286 ‒ Bergemesa brachmanni (Berg, 1884); 275, 278, 281, 284, 287 ‒ Gardena faustina McAtee & Malloch, 1925; 276, 279, 282, 285, 288 ‒ Tagalis seminigra Champion, 1899. Scale bar: 0.5 mm
Figs 79‒88 in Comparative genitalic morphology in ten genera of thread-legged bugs of the tribe Metapterini, and its phylogenetic importance (Hemiptera: Heteroptera: Reduviidae)
Figs 79‒88. Pygophore in lateral view. 79–81 – Ghinallelia Wygodzinsky, 1966; 82–83 – Liaghinella Wygodzinsky, 1966; 84 – Onychomesa Wygodzinsky, 1966; 85–86 – Pseudometapterus Wygodzinsky, 1966; 87–88 – Schidium Bergroth, 1916. Scale bar: 0.5 mm. Abbreviations: mpp – medial posterior process of pygophore; pa – paramere; vpp – ventral protruding of the pygophore.
Figs 122‒131 in Comparative genitalic morphology in ten genera of thread-legged bugs of the tribe Metapterini, and its phylogenetic importance (Hemiptera: Heteroptera: Reduviidae)
Figs 122‒131. Phallus in dorsal view. 122–124 – Ghinallelia Wygodzinsky, 1966; 125–126 – Liaghinella Wygodzinsky, 1966; 127 – Onychomesa Wygodzinsky, 1966; 128–129 – Pseudometapterus Wygodzinsky, 1966; 130–131 – Schidium Bergroth, 1916. Scale bar: 0.5 mm. Abbreviations: dps – dorsal phallothecal sclerite; duc – ductifer.
FIG. 1 in Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey
FIG. 1. — Nyctereutes donnezani from Çalta, central Turkey, early Pliocene. Skull MNHN.F.ACA292, probably belonging to a female individual, in dorsal (A), occipital (B), ventral (C) and right lateral (D) views. Scale bar: 50 mm.
FIG. 3 in Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey
FIG. 3. — Nyctereutes donnezani from Çalta, central Turkey, early Pliocene: A-C, right mandible MNHN.F.ACA549 in occlusal (A), labial (B) and lingual (C), views; D-F, right mandible fragment MNHN.F.ACA294 in occlusal (D), labial (E) and lingual (F) views; G-I, right mandible fragment MNHN.F.ACA295 in occlusal (G), labial (H) and lingual (I) views; J, K, left mandible fragment FSL-212806 in lingual (J) and labial (K) views. Scale bar: 50 mm.
FIG. 2 in Phylogenetic relationships of Nyctereutes Temminck, 1838 (Canidae, Carnivora, Mammalia) from early Pliocene of Çalta, Turkey
FIG. 2. — Nyctereutes donnezani from Çalta, central Turkey, early Pliocene. Skull MNHN.F.ACA291, probably belonging to a male individual, in dorsal (A), occipital (B), ventral (C) and right lateral (D) views. Scale bar: 50 mm.
FIG. 17 in Archaeochiapasidae n. fam., a new early Cenomanian brachyuran family from Chiapas, Mexico, new hypothesis on Lecythocaridae Schweitzer & Feldmann, 2009, and phylogenetic implications (Crustacea, Decapoda, Brachyura, Eubrachyura)
FIG. 17. — Retroplumidae Gill, 1894 (Retroplumoidea Gill, 1894). Costacopluma maroccana Ossó-Morales, Artal & Vega, 2010, Calcaires à slumps de Taghit Formation, late Campanian, Merija, Morocco: thoracic sternum and pleon. AO39, Private Collection Àlex Ossó. Photography by Àlex Ossó and courtesy of À. Ossó. Scale bar: 10 mm.
GenBank accession numbers of the four marker genes and associated voucher specimens/tissues that were used in this study. For more details see Guo et al. (2014). Sequences of species in bold are unpublished and were provided by P. Guo as personal communication in Rediscovery of Andrea's keelback, Hebius andreae (Ziegler & Le, 2006): First country record for Laos and phylogenetic placement
GenBank accession numbers of the four marker genes and associated voucher specimens/tissues that were used in this study. For more details see Guo et al. (2014). Sequences of species in bold are unpublished and were provided by P. Guo as personal communication
Fig. 5 in Rediscovery of Andrea's keelback, Hebius andreae (Ziegler & Le, 2006): First country record for Laos and phylogenetic placement
Fig. 5. Location of the Hin Nam No National Protected Area in central Laos, where the new record (star) of Hebius andreae took place, which is located opposite to the type locality in Vietnam, viz. Phong Nha – Ke Bang National Park in Vietnam.
Fig. 1 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 1. Sampling sites of Psenulus fulvicornis (Schenck, 1857) (large filled circles) and Psenulus schencki (Tournier, 1889) (squares) used for the DNA barcode sequencing of the mitochondrial cox1 locus. Small filled circles show georeferenced distribution records of P. fulvicornis with confirmed determinations by Schmid-Egger (2002) together with newer records by Gayubo et al. (2012), Mokrousov & Popov (2016), Reder & Niehuis (2014), Standfuss & Standfuss (2012) and Zsolt (2008). The triangle represents the undetermined specimen (PSC-7) from Pisa, Italy.
Fig. 5 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 5. Maximum likelihood tree showing the phylogenetic relationships within Psenulus taxa based on cox1 and the GTR+G substitution model. All bifurcations with bootstrap values below 60% were collapsed. The bold black lines indicate bootstrap of at least 70% and the thick grey bifurcations 60-70%. Both Diodontus minutus (Fabricius, 1793) and Pemphredon lethifer (Shuckard, 1837) sequences root this tree. Specimens are labelled with the sample ID, their GenBank accession number or the Barcode Identification Number of the BOLD System, and the collection site if known (see supplementary Table S1). Six lineages I–VI were found within the P. fulvicornis-Group.
Fig. 6. a in Phylogenetic relationships of Chanidae (Teleostei: Gonorynchiformes) as impacted by Dastilbe moraesi, from the Sanfranciscana basin, Early Cretaceous of Brazil
Fig. 6. a. Maxilla of Dastilbe moraesi (CPUFMT 734), lateral view, anterior to left; b. Maxilla and premaxilla of Dastilbe crandalli, uncatalogued specimen, lateral view, anterior to left; c. Maxilla and premaxilla of Chanos chanos, ANSP 63199, lateral view, anterior to left. d. Jaws and suspensorium of Dastilbe moraesi (CPUFMT 730, 30.0 mm TFL), lateral view, anterior to left. Synapomorphies of Chanoidei observed are: 1-Large, very broad, concave-convex premaxilla, with long oral process; 2- posterior region of the maxilla expanded in a bulbous outline; 3- quadrate-mandibular articulation anteriorly displaced, anterior to orbit; 4- symplectic elongated; 5- metapterygoid process of hyomandibula present on its anterior border.
Fig. 5 in Description of a new species of Moenkhausia (Characiformes: Characidae) from the upper Paraguay basin, Central Brazil, with comments on its phylogenetic relationships
Fig. 5. Map showing the localities of Moenkhausia flava. Red star represents the type locality. Black square represents the Salto das Nuvens fall and the white square represents Salto Maciel fall.
FIG. 13 in Revisiting Calohypsibiidae and Microhypsibiidae: Fractonotus Pilato, 1998 and its phylogenetic position within Isohypsibiidae (Eutardigrada: Parachela)
FIG. 13. — The phylogenetic position of Fractonotus verrucosus (Richters, 1900) n. comb. on the Bayesian Inference and Maximum Likelihood cladogram constructed from currently available 18S rRNA sequences for Isohypsibioidea and Hypsibioidea, with a Milnesium spp. sequence as the outgroup (see also Table 2). Values above branches indicate posterior probability values (BI), whereas values under branches show bootstrap values (ML). Branches with support below 0.9 in BI (70% in ML) were collapsed.
FIG. 10 in Revisiting Calohypsibiidae and Microhypsibiidae: Fractonotus Pilato, 1998 and its phylogenetic position within Isohypsibiidae (Eutardigrada: Parachela)
FIG. 10. — Schematic comparison of stylet furcae in: A, Fractonotus Pilato, 1998; B, Calohypsibius Thulin, 1928; C, Isohypsibius Thulin, 1928.
FIG. 4 in Revisiting Calohypsibiidae and Microhypsibiidae: Fractonotus Pilato, 1998 and its phylogenetic position within Isohypsibiidae (Eutardigrada: Parachela)
FIG. 4. — Genus Calohypsibius Thulin, 1928 s.s., after exclusion of F. verrucosus n. comb. (PCM): A, Calohypsibius ornatus (Richters, 1900); B, Calohypsibius maliki Michalczyk & Kaczmarek, 2005; C, Calohypsibius schusteri Nelson & McGlothlin, 1996. Scale bars: 10 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.