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82 results for “phylogram”
FIGURE 1. Phylogram obtained under a in Cortinarius uxorum, a new telamonioid species in Cortinarius sect. Firmiores from the Iberian Peninsula
FIGURE 1. Phylogram obtained under a Bayesian framework representing phylogenetic relationships among the new Cortinarius species and its relatives based on nrITS data. For each terminal, the GenBank nrITS accession number, species name and an indication when they are type material (T) are given. Candidate species inferred by the two species delimitation methods are represented by rounded rectangles (ABGD using a P value of 0.0017) and red ellipses (bPTP). The black dot indicates the clade containing the species considered in the ABGD analysis. The shaded boxes indicate that the number of specimens for a given species is two or more. Species synonymies follow Bidaud et al. (2017; see also Table 1). GenBank sequences labelled as C. biformis which are not likely to represent the nominal species according to data in Bidaud et al. (2017) are indicated with the abbreviation "bif" and subscript numbers in parentheses. Support values are given for each node (BI and ML analyses, on the left and right respectively). Branches showing strong support (PP ≥ 0.95 and/or BP ≥ 70%) are in bold. Illustrator: I. Garrido-Benavent.
FIGURE 1. Phylogram inferred from a in Pseudohydnum brunneiceps (Auriculariales, Basidiomycota), a new species from Central China
FIGURE 1. Phylogram inferred from a two-locus (28S and ITS) dataset using RAxML. BS ≥ 50% and PP ≥ 0.95 are indicated above or below the branches as RaxML BS/PP.
FIGURE 2. Bayesian Inference phylogram showing relationships among 21 in Goniurosaurus chengzheng sp. nov., a new species of Leopard Gecko from Guangxi China (Squamata: Eublepharidae)
FIGURE 2. Bayesian Inference phylogram showing relationships among 21 Goniurosaurus species and two outgroup taxa. Support values in the form posterior probabilities (Bayesian Inference)/ bootstrap values (maximum likelihood) are shown above branches. The tree is a Bayesian topology. The position of G. chengzheng sp. nov. is highlighted in the tree.
FIGURE 2. Phylogram from a Maximum Parsimony analysis, representing a 50 in Molecular systematics of Malagasy poison frogs in the Mantella betsileo and M. laevigata species groups
FIGURE 2. Phylogram from a Maximum Parsimony analysis, representing a 50% majority-rule consensus tree of 65700 equally most parsimonious trees. Mantella bernhardi was defined as outgroup. Specimens with identical haplotypes were merged; numbers in brackets after names of taxa give the number of specimens with the same haplotype. Numbers at nodes are bootstrap values in percent from a Maximum Parsimony bootstrap analysis with 250 replicates. Asterisks denote posterior probabilities from a partitioned Bayesian analysis: (*)>90%; *>95%; **>99%.
FIGURE 1. Maximum parsimony phylogram inferred from partial 5.8S in Systematic analyses of Ophiocordyceps ramosissimum sp. nov., a new species from a larvae of Hepialidae in China
FIGURE 1. Maximum parsimony phylogram inferred from partial 5.8S ITS, nrSSU, EF-1α, RPB1 sequence data. Bootstrap values above the branches are from 1,000 replicates. The tree is rooted with Glomerella cingulata. Type species are marked with an asterisk.
FIGURE 1. Bayesian consensus phylogram obtained from 16 in Molecular evidence for the occurrence of the lichen genus Biatora (Lecanorales, Ascomycota) in the Southern Hemisphere
FIGURE 1. Bayesian consensus phylogram obtained from 16 OTUs and ITS gene loci of the Ramalinaceae clade. Cliostomum griffithii was used as outgroup. Support values (in bold) are given as "BP/PP". Biatora from South America is placed within the rufidula clade with a ML bootstrap value of 99% and a posterior probability of 1.0.
Figure 3. Maximum likelihood phylogram constructed from 6755 in Integrative taxonomy at the nexus of population divergence and speciation in insular speckled rattlesnakes
Figure 3. Maximum likelihood phylogram constructed from 6755 nSNPs (left), with nodal support derived from summarising results of 100 bootstrap pseudoreplicates, and posterior assignment of each individual to clusters using STRUCTURE (right), based on 29,624 biallelic nSNPs. Colours correspond to populations or species discussed in the text.
Figure 6. The maximum-likelihood phylogram for cytochrome oxidase subunit I in A case of biodiversity overestimation in the Balkan Belgrandiella A. J. Wagner, 1927 (Caenogastropoda: Hydrobiidae): molecular divergence not paralleled by high morphological variation
Figure 6. The maximum-likelihood phylogram for cytochrome oxidase subunit I (COI) haplotypes. Bootstrap support and Bayesian posterior probabilities are shown. Normal font indicates reference haplotypes, bold font indicates haplotypes obtained in present study.
Figure 7. The maximum-likelihood phylogram for H3 in A case of biodiversity overestimation in the Balkan Belgrandiella A. J. Wagner, 1927 (Caenogastropoda: Hydrobiidae): molecular divergence not paralleled by high morphological variation
Figure 7. The maximum-likelihood phylogram for H3 haplotypes. Bootstrap support and Bayesian posterior probabilities are shown.
Figure 7. Maximum likelihood phylogram for combined 18S and cytochrome oxidase subunit I in An unusual, flagellum-bearing hydrobiid snail (Gastropoda: Rissooidea: Hydrobiidae) from Greece, with descriptions of a new genus and a new species
Figure 7. Maximum likelihood phylogram for combined 18S and cytochrome oxidase subunit I (COI) sequences, bootstrap support.
Figure 6. Maximum likelihood phylogram for cytochrome oxidase subunit I in An unusual, flagellum-bearing hydrobiid snail (Gastropoda: Rissooidea: Hydrobiidae) from Greece, with descriptions of a new genus and a new species
Figure 6. Maximum likelihood phylogram for cytochrome oxidase subunit I (COI) sequences, bootstrap support (1000 replicates).
Figure 2. Bayesian phylogram computed for cytochrome oxidase I in Bythinella Moquin-Tandon, 1856 (Gastropoda: Rissooidea: Bythinellidae) in Romania: species richness in a glacial refugium
Figure 2. Bayesian phylogram computed for cytochrome oxidase I (COI) sequences with MRBAYES, Bayesian probabilities for branches are given.
Figure 1. Phylograms obtained from neighbour joining separate analyses for the 28S in Reclassification of Bracon mendocinus, a gall-associated doryctine wasp, and description of a new closely related species of Allorhogas (Hymenoptera: Braconidae)
Figure 1. Phylograms obtained from neighbour joining separate analyses for the 28S and COI datasets, including all the available Allorhogas sequences, those of the other gall-associated braconids and Heterospilus as the outgroup. The two specimens investigated in this paper are indicated in bold type. The numbers above each branch indicate the observed parsimony changes.
FIGURE 3b. Maximum likelihood phylogram constructed from combined cyt b and 12S rRNA sequences for 20 in Specific limits and emerging diversity patterns in East African populations of laminate-toothed rats, genus Otomys (Muridae: Murinae: Otomyini): Revision of the Otomys typus complex 3024
FIGURE 3b. Maximum likelihood phylogram constructed from combined cyt b and 12S rRNA sequences for 20 Otomys specimens, one representative of Parotomys brantsii and four murine outgroups under the best-fit GTR+I+G model. Support indices for each node (1 – 23) are given beside the phylogram (BPP/ MLbs/ UwPbs/ 6PPbs/ NJpbs/ Njcbs). For both phylogenies (Figure 3a and 3b), the relative branch thickness indicates significant nodal support from the phylogenetic reconstruction methods employed herein (four to six methods—thick lines; two methods—intermediate lines). Dashed lines show unsupported relationships; Abbreviations and symbols: NS - BPP <0.95; "-" indicates that the node was not present in the relevant analysis, or percentage bootstrap support below 50%.
Figure 3. Bayesian phylogram obtained with combined 18S and 28S in Congruence between molecular phylogeny and cuticular design in Echiniscoidea (Tardigrada, Heterotardigrada)
Figure 3. Bayesian phylogram obtained with combined 18S and 28S rRNA, aligned with MUSCLE and trimmed with GBlocks, using all taxa considered in the present study (i.e. outgroups and eutardigrades from Table 3, heterotardigrades from Table 2, and Echiniscus species from Table 1). Above branches are posterior probabilities obtained in the Bayesian analysis are provided. Below branches are bootstrap support values from the ML analysis.
Figure 2. Bayesian phylogram obtained with 18S and 28S in Congruence between molecular phylogeny and cuticular design in Echiniscoidea (Tardigrada, Heterotardigrada)
Figure 2. Bayesian phylogram obtained with 18S and 28S rRNA information combined, using all taxa considered in the present study (i.e. outgroups and eutardigrades from Table 3, heterotardigrades from Table 2, and Echiniscus species from Table 1). Above branches are posterior probabilities obtained in the Bayesian analysis. Below branches two values are provided: bootstrap support values from the ML analysis, and bootstrap support values from the parsimony analysis. A dash indicates absence of data for a given branch and analysis that had support in other analyses. Tardigrade classes (Heterotardigrada, Eutardigrada), orders (Apochela, Parachela, Arthrotardigrada, Echiniscoidea), and the family Echiniscidae are indicated.
FIGURE 21. Maximum parsimony 16S rRNA phylogram for the Boophis albipunctatus group. From 485 total characters, 391 were constant and 72 in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 21. Maximum parsimony 16S rRNA phylogram for the Boophis albipunctatus group. From 485 total characters, 391 were constant and 72 parsimony informative. MP searches retained 26 trees of which a strict consensus is shown. Consensus support values higher than 50, from 2000 bootstrap replicates, are shown; an asterisk indicates Bayesian posterior probabilities equal or higher than 95%. Species newly described herein are in bold.
Figure 61. Single marker phylograms from Bayesian analyses. See Figure 60 in The lace web spiders (Araneae, Phyxelididae) of Madagascar: phylogeny, biogeography and taxonomy
Figure 61. Single marker phylograms from Bayesian analyses. See Figure 60 for taxon names associated with specimen numbers. Posterior probabilities greater than or equal to 0.90 are labelled *. A, 28S. B, COI. C, 18S. D, H3.
Figure 2. A Bayesian phylogram for the combined 12S in Neglected refugia of biodiversity: mountainous regions in Mozambique and Malawi yield two novel freshwater crab species (Potamonautidae: Potamonautes)
Figure 2. A Bayesian phylogram for the combined 12S rRNA + 16S rRNA + COI mtDNA sequence data. Statistical values above the nodes represent values for bootstrapping for maximum parsimony (MP). Values below each node represent the posterior probability (pP) values for the Bayesian analyses. Only bootstrap values> 70% and pP values> 0.95 are shown.
FIGURE 1. The consensus phylogram resulting from a in Three new host records of endophytic Neofusicoccum species reported from Dendrobium orchids
FIGURE 1. The consensus phylogram resulting from a RAxML analysis of the combined four loci alignment (ITS-RPB2 -EF-1α-TUB2) of the analysed Neofusicoccum and related species sequences. Strains isolated in this study are in red. Ex-epitype and ex-type isolates are
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.