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Dataset results
101 results for “plant immunity”
Revealing global translational reprogramming as a fundamental layer of immune regulation in plants
GEO Series GSE86581. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
β-Hydroxybutyrate Boosts Plant Immunity through Enhanced histone Kbhb Levels and Gene Expression Regulation [RNA-seq]
GEO Series GSE294824. Oryza sativa Japonica Group. 12 samples. Type: Expression profiling by high throughput sequencing.
The Arabidopsis deNADding enzyme DXO1 modulates the plant immunity response.
GEO Series GSE291552. Arabidopsis thaliana. 16 samples. Type: Expression profiling by high throughput sequencing.
A plant immune protein enables broad antitumor response by rescuing microRNA deficiency in cancers [miRNA-seq]
GEO Series GSE198146. Homo sapiens; Mus musculus. 16 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Pathogen induced m6A dynamics regulate plant immunity
GEO Series GSE171536. Arabidopsis thaliana. 75 samples. Type: Other; Expression profiling by high throughput sequencing.
The thiolation modification of tRNA is essential for plant immunity
GEO Series GSE183087. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Master transcription factors of plant immunity are targeted by a Ralstonia solanacearum effector
GEO Series GSE179700. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
The role of a glucosinolate-derived nitrile in plant immune responses
GEO Series GSE139089. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
A Conserved Salicylic Acid Signaling Pathway Controls Plant Immunity against Pseudomonas thought the unique TGA transcription factor in Marchantia polymorpha
GEO Series GSE300298. Marchantia polymorpha. 24 samples. Type: Expression profiling by high throughput sequencing.
Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
GEO Series GSE88798. Arabidopsis thaliana. 366 samples. Type: Expression profiling by high throughput sequencing.
Diacetyl determines plant-bacteria relation via phosphate-dependent modulation of plant immunity
GEO Series GSE138478. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune response of corals with those of mammals and plants
GEO Series GSE46389. Acropora millepora. 12 samples. Type: Expression profiling by high throughput sequencing.
A plant immune protein enables broad antitumor response by rescuing microRNA deficiency in cancers [RNA-seq and smallRNA-seq]
GEO Series GSE199309. Homo sapiens. 59 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other.
Magnaporthe oryzae Auxiliary Activity Protein MoAa91 Functions as Chitin-Binding Protein To Induce Appressorium Formation on Artificial Inductive Surfaces and Suppress Plant Immunity
GEO Series GSE128219. Pyricularia oryzae. 60 samples. Type: Expression profiling by high throughput sequencing.
Activation of a helper NLR by plant and bacterial TIR immune signaling
GEO Series GSE277725. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Identification of regulatory networks of microRNAs and their targets in immunity to Colletotrichum gloeosporioides in tea plant (Camellia sinensis L.)
GEO Series GSE119728. Camellia sinensis. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing; Other.
Plant_Innate_Immunity_ATAC-seq
<p><strong>Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors</strong></p> <p>Ding et al 2020</p> <p>This repository stored all input dataset & output dataset except bam files.</p> <p>To make bam files, raw read data are stored in accession number PRJEB38923.</p> <ul> <li>ACR_annotation.zip, Correlation_replicates.zip, Integrate_ATAC-seq_and_RNA-seq.zip, Motif_binding_analysis.zip ... input/output files for each analysis.</li> <li>other zip files ... output files of MACS (call ACRs, call DARs)</li> <li>These outputs are generated by scripts stored in github. (<a href="https://github.com/slt666666/Plant_Innate_Immunity_ATAC-seq">https://github.com/slt666666/Plant_Innate_Immunity_ATAC-seq</a>)</li> </ul>
Crystal structure of the LRR ectodomain from the plant immune receptor kinase SOBIR1 from Arabidopsis thaliana - sulphur SAD datasets
<p>This dataset includes the raw X-ray diffraction images collected on 06.11.2017 at beam line PXIII of the Swiss Light Source (SLS) Villigen, Switzerland. Native (dts_xxx, λ=1.033201 Å, 1 360° wedge at 0.1° oscillation) and redundant sulphur single-wavelength anomalous dispersion (SAD) data (ssad_xxx, λ= 2.078524 Å, 3 360° wedges at 0.1° oscillation) were collected to 1.75 Å and 3.12 Å resolution. The dataset includes a .bz2 archive of the XDS processing for native and sulphur SAD data, data were scaled together in xscale, the resulting xscale.hkl and nat1.hkl contain the integrated intensities and crystallographic structure factors. The corresponding coordinates have been deposited with the Protein Data Bank (http://rcsb.org) with ID 6R1H.</p>
Confocal microscopy data associated with "The conserved aphid saliva chemosensory protein effector Mp10 targets plant AMSH deubiquitinases at cellular membranes to suppress pattern-triggered immunity"
<p><strong>Confocal microscopy data as described in "The conserved aphid saliva chemosensory protein effector Mp10 targets plant AMSH deubiquitinases at cellular membranes to suppress pattern-triggered immunity".</strong></p> <p> </p> <p>Data relate to Figure 2 (“Mp10 interacts with AMSH deubiquitinases in yeast and plants”) involving FLIM-FRET imaging data to determine the interaction between eGFP-tagged <em>Myzus persicae </em>Mp10 and mCherry-tagged <em>Nicotiana benthamiana </em>AMSH proteins in plant cells; and Figure 6 (“Mp10 affects the abundance and localisation of cell-surface receptor-like kinases) involving confocal microscopy showing the effect of Mp10-expression on the localisation of the GFP-tagged FLS2 receptor-kinase protein, and it’s colocalization with RFP-tagged markers of the plasma membrane and the tonoplast in plant cells.</p> <p>Constructs encoding fluorescent protein fusions were transformed into <em>Agrobacterium tumefaciens </em>GV3101, and mixed Agrobacterium cultures were infiltrated into mature leaves of <em>N. benthamiana </em>plants to co-express the desired combinations of proteins. All image data was gathered from lower epidermal leaf cells of infiltrated leaves 2-3 days post infiltration.</p> <p> </p> <p><strong>FLIM-FRET assays.</strong></p> <p>eGFP-tagged Mp10, or eGFP-alone, was co-expressed with mCherry-tagged AMSH proteins, or mCherry fused to aquaeorin in <em>N. benthamiana</em> via agroinfiltration as described above. Lower epidermal cells of leaf sections were imaged 2-3 days after infiltration using a Leica Stellaris 8. Images were captured detecting fluorescence from eGFP (WLL laser, ex.488 nm, em 509-534 nm.) mCherry (lWLL aser, ex. 587 nm em 603-625 nm.) and chlorophyll (WLL laser, ex 587 nm. em 687-712 nm.). Regions of cells showing expression of both eGFP- and mCherry- tagged proteins but lacking chlorophyll were selected for FLIM analysis to avoid bleed through of chlorophyll fluorescence into the eGFP chanel. Fluorescence lifetime data of EGFP were collected from these regions in FLIM mode (WLL laser ex. 488nm, em 525-530 nm.), data were collected at 128x128 resolution until 1000 photons per pixel were collected for the most intense regions of the image. Instrument response function was captured using erythrosine on each day of data collection. FLIM data were analysed using Leica LASX FLIM FCS software. Fluorescence lifetime decay curves of free eGFP control samples were modelled as a 2-component exponential function, and all samples from each experimental set were modelled against the fluorescence lifetime from the corresponding control samples to derive values for fluorescent lifetime and %FRET efficiency for each image collected. %FRET efficiency was mapped to the images and phasor plots were generated for regions with the highest and lowest FRET efficiency, showing that the FRET signal was associated with a clockwise shift on the phasor plot consistent with <em>bona-fide </em>FRET. Full experimental metadata for each image set are included within the .lif files.</p> <p> </p> <p><strong>FLS2-GFP localisation experiments.</strong></p> <p>Confocal microscopy analysis was performed on a Leica TCS SP8X confocal DM6 microscope with a 63x water-immersion objective, using Leica Application Suite X (LAS X) software (3.5.7.23225). eGFP and chlorophyll signals were excited by a 488 nm Argon laser with emission, respectively, at 495–545 nm and 690-710 nm. RFP signal was excited by a 590 nm white light laser (WLL) with emission at 605–650 nm. Full experimental metadata for each image set are included within the .lif files.</p> <p> </p> <p>Leica Image Files (.lif) that contain multiple images including metadata associated with image acquisition and processing.</p> <p> </p> <p>FLIM030823.lif</p> <p>FLIM130724.lif</p> <p>FLIM140623.lif</p> <p>FLIM160623.lif</p> <p>FLIM240523.lif</p> <p>FLIM250523.lif</p> <p>Files include FLIM-FRET data as shown in Figure 2 parts D-L.</p> <p>FLIM-data-files.xlsx includes a description of the individual image filenames, and the combinations of fluorophore imaged in each.</p> <p> </p> <p>Fig6cSlFLS2-gfp_Mp10-RFP.lif</p> <p>Fig6c-SlFLS2-GFP_EV-RFP.lif</p> <p>Correspond to Figure 6 C showing co-expression of RFP-tagged Mp10 (or free RFP control) co-expressed with GFP-tagged FLS2</p> <p> </p> <p>20230828_SlFLS2-GFP_Flag-Mp10_Flag-alone_Remorin-RFP-3-3-1x.lif</p> <p>20230828_SlFLS2-GFP_Flag-Mp10_Flag-alone_Remorin-RFP-3-3-3x.lif</p> <p>20230828_SlFLS2-GFP_Flag-Mp10_Flag-alone_Remorin-RFP-4-2-3x.lif</p> <p>0230828_SlFLS2-GFP_Flag-Mp10_Flag-alone_Remorin-RFP4-2-1x.lif</p> <p>Correspond to Figure 6 D showing co-expression of FLAG-tagged Mp10 (or free FLAG control) co-expressed with GFP-tagged FLS2 together with RFP-tagged plasma membrane marker Remorin</p> <p> </p> <p>20230911_SlFLS2-GFP_Flag-Mp10_Flag-alone_StSUC4-RFP-14-5-1x.lif</p> <p>20230911_SlFLS2-GFP_Flag-Mp10_Flag-alone_StSUC4-RFP-14-5-3x.lif</p> <p>20230911_SlFLS2-GFP_Flag-Mp10_Flag-alone_StSUC4-RFP-16-1-1x.lif</p> <p>20230911_SlFLS2-GFP_Flag-Mp10_Flag-alone_StSUC4-RFP-16-1a-3x.lif</p> <p>20230911_SlFLS2-GFP_Flag-Mp10_Flag-alone_StSUC4-RFP-16-1b-1x.lif</p> <p>Correspond to Figure 6 E showing co-expression of FLAG-tagged Mp10 (or free FLAG control) co-expressed with GFP-tagged FLS2 together with RFP-tagged tonoplast marker SUC4.</p> <p> </p> <p>We are grateful to the John Innes Centre (JIC) Bioimaging Platform for training and technical support</p> <p>This work was funded by UK Research and Innovation (UKRI) Biotechnology and Biological Sciences Research Council (BBSRC) grants to SAH (BB/V008544/1 and BB/N009169/1), Additional Support was provided by the BBSRC Institute Strategy Programmes (BBS/E/J/000PR9797 and BBS/E/JI/230001B) awarded to the John Innes Centre (JIC). The JIC is grant-aided by the John Innes Foundation.</p> <p> </p>
Effect of a Combination of Plant Extracts (BSL_EP024) on the Immune Response
ClinicalTrials.gov study NCT04029558. IPD Sharing: NO. Countries: 1. Publications: 0.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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