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ShareScore release 0.9.0
Dataset results
53 results for “protein folding”
Protein folding dependence on Selenoprotein M contributes to steady cartilage extracellular matrix repressing ferroptosis specifically access to PERK/ATF4/CHAC1 axis
GEO Series GSE252487. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Supplements for "The Proteomic Code: Novel Amino Acid Residue Pairing Models "Encode" Protein Folding and Protein-Protein Interactions"
<p><strong>Supplements for "The Proteomic Code: Novel Amino Acid Residue Pairing Models “Encode” Protein Folding and Protein-Protein Interactions"</strong></p> <p>This supplement includes the following files:</p> <ul> <li>Main_v02.R --- Script in R language to process protein structures and produce the datasets.</li> <li>datasets_v02.zip --- final filtered version of datasets produced in R language (by "Main_v02.R"). </li> <li>Dataset key v02.txt --- key and descriptions to column names in ("datasets.zip"). </li> </ul> <p>The article featuring these datasets is submitted to:</p> <p>Journal: Computers in Biology and Medicine (Reference: CBM_110033)<br>Title: "The Proteomic Code: Novel Amino Acid Residue Pairing Models "Encode" Protein Folding and Protein-Protein Interactions"<br>Authors: Hameduh, Tareq; Miller, Andrew D. ; Heger, Zbynek; Haddad, Yazan</p> <p> </p> <p> </p>
The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini
<p>The deposited data sets contain data for the supplementary figures of the manuscript "The insertase YidC chaperones the polytopic membrane protein MelB inserting and folding simultaneously from both termini" by Blaimschein et al. published in Structure (2023).</p>
A functional connection between translation elongation and protein folding at the ribosome exit tunnel in Saccharomyces cerevisiae
GEO Series GSE151632. Saccharomyces cerevisiae. 18 samples. Type: Other.
R-DeeP/TripepSVM identifies the RNA-binding OB-fold-like protein PatR as regulator of heterocyst patterning
GEO Series GSE280056. Nostoc sp. PCC 7120 = FACHB-418. 6 samples. Type: Other.
Accurate prediction of cellular co-translational folding indicates proteins can switch from post- to co-translational folding
GEO Series GSE75322. Saccharomyces cerevisiae. 2 samples. Type: Other.
Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors [gene expression]
GEO Series GSE56838. Mus musculus. 15 samples. Type: Expression profiling by array.
Fig. 3 in TIM barrel fold and glycan moieties in the structure of ICChI, a protein with chitinase and lysozyme activity
Fig. 3. Electrostatic potential information (+5 to −5 kT/e) of the ICChI. A & C: Solvent accessible surface corresponding orientation 1; B&D: Solvent accessible surface corresponding orientation 2.
Balancing Protein Folding and Disulfide Bond Formation Rates is Key to Mitigating Secretory Stress
GEO Series GSE27062. Schizosaccharomyces pombe; Saccharomyces cerevisiae. 18 samples. Type: Expression profiling by array.
Systematic characterization of indel variants using a yeast-based protein folding sensor
GEO Series GSE270811. synthetic construct. 73 samples. Type: Other.
Protein-RNA-Chromatin Interactions Reveal Nuclear RNA Architecture Functions in Transcriptional Condensation and Chromatin Folding
GEO Series GSE123455. Drosophila melanogaster. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Chaperone saturation mediates translation and protein folding efficiency
GEO Series GSE104303. Escherichia coli; Escherichia coli str. K-12 substr. MG1655. 30 samples. Type: Other; Expression profiling by high throughput sequencing.
Transcriptomic analysis of an E. coli deletion mutant of the two C-terminal OB fold domains of r-protein S1
GEO Series GSE166046. Escherichia coli str. K-12 substr. MG1655. 4 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.