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ShareScore release 0.9.0
Dataset results
84 results for “reference genes”
Gene expression changes in cord blood-derived ECFCs in response to in vitro senescence stimuli for the identification of novel reference genes
GEO Series GSE125792. Homo sapiens. 12 samples. Type: Expression profiling by array.
Reference-guided genome assembly of long non-coding RNA transcripts reveals target genes associated with Crohn’s disease
GEO Series GSE317503. Homo sapiens. 140 samples. Type: Expression profiling by high throughput sequencing.
System genetics in rat HXB/BXH reference population identifies Tti2 as a pleiotropic quantitative trait gene for adult hippocampal neurogenesis and serum glucose
GEO Series GSE160361. Rattus norvegicus. 40 samples. Type: Expression profiling by high throughput sequencing.
The Challenge of Stability in High-Throughput Gene Expression Analysis: Comprehensive Selection and Evaluation of Reference Genes for BALB/c Mice Spleen Samples in the Leishmania infantum Infection Mo
GEO Series GSE80709. Mus musculus. 47 samples. Type: Expression profiling by RT-PCR.
Gene expression kinetics in Murine Gut wall tissue: Reference (Total RNA Mixture of all samples) vs. Probiotics/Salmonella treated mice
GEO Series GSE98353. Mus musculus. 24 samples. Type: Expression profiling by array.
Reference annotation for small RNA-producing genes in maize
GEO Series GSE77657. Zea mays. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Gene Expression Networks in the Drosophila Genetic Reference Panel
GEO Series GSE117850. Drosophila melanogaster. 800 samples. Type: Expression profiling by high throughput sequencing.
Identification of reference genes for quantitative Real-Time PCR in Bifidobacterium bifidum PRL2010 based on transcriptome analysis
GEO Series GSE30832. Bifidobacterium bifidum; Bifidobacterium bifidum PRL2010. 4 samples. Type: Expression profiling by array.
Evaluation of reliable reference genes for the lung of neonatal C57BL/6 mice under consideration of biological, technical and experimental variables
GEO Series GSE189505. Mus musculus. 6 samples. Type: Expression profiling by array.
Selection of reference genes for gene expression studies related to hypoxia in cervical cancer
GEO Series GSE75034. Homo sapiens. 166 samples. Type: Expression profiling by array.
Reference transcriptome and Alignments of candidate gene
<p>Recently diverged taxa with contrasting phenotypes offer opportunities for unravelling the genetic basis of phenotypic variation in nature. Horseshoe bats are a speciose group that exhibit a derived form of high duty cycle echolocation in which the inner ear is finely tuned to echoes of the narrowband call frequency. Here, by focusing on three recently diverged subspecies of the intermediate horseshoe bat (<i>Rhinolophus affinis</i>) that display divergent echolocation call frequencies, we aim to identify candidate loci putatively involved in hearing frequency variation. We used <i>de novo</i> transcriptome sequencing of two mainland taxa (<i>himalayanus</i> and <i>macrurus</i>)<i> </i>and one island taxon (<i>hainanus</i>) to compare expression profiles of thousands of genes. By comparing taxa with divergent call frequencies (around 15 kHz difference), we identified 252 differentially expressed genes (DEGs), of which six have been shown to be involved in hearing or deafness in human/mouse. To obtain further validation of these results, we applied quantitative reverse transcription-PCR to the candidate gene <i>FBXL15</i> and found a broad association between the level of expression and call frequency across taxa. The genes identified here represent strong candidate loci associated with hearing frequency variation in bats.</p>
Mare-MAGE database A curated reference database of fish mitochondrial genes
<div> <p>Biodiversity assessment approaches based on molecular biology techniques such as NGS, metabarcoding, RAD-seq, or SnaPshot sequencing, are increasingly used in assessing marine and aquatic ecosystems. In this study, we present a new reference database for fish meta-barcoding based on mitochondrial genes. The <strong><em>Mare-MAGE</em></strong> database contains quality-checked sequences of the mitochondrial genes for 12S ribosomal RNA and Cytochrome c Oxidase I. All sequences were obtained from the National Center for Biotechnology Information- GenBank (NBCI-GenBank) and the European Nucleotide Archive (ENA) and have undergone intensive processing. They were checked for false annotations and non-target anomalies, according to the Integrated Taxonomic Information System (ITIS) and FishBase. The dataset is compiled in ARB-Home, FASTA and Qiime2 formats, and is publicly available from the <strong><em>Mare-MAGE</em></strong> database website (<a href="http://mare-mage.weebly.com/">http://mare-mage.weebly.com/</a> and <a href="https://figshare.com/projects/MARE-MAGE_database_Fish/90917">https://figshare.com/projects/MARE-MAGE_database_Fish/90917</a>). It includes altogether 231,333 COI and 12S rRNA gene sequences of fish covering 19,506 species of 4,058 genera and 586 families.</p> </div> <div> <div> </div> </div>
Reference transcriptome and Alignments of candidate gene
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Reference Genes for MiRNAome Analysis of Urothelial Carcinomas
GEO Series GSE36121. Homo sapiens. 24 samples. Type: Non-coding RNA profiling by array.
Gene expression in 3T3L-1 and Raw264.7 Cells following treatment with Serotonin and Cortisol separately as well as together for 48 hours: 3T3L-1 or Raw264.7 cells co-cultured together vs. Reference (E
GEO Series GSE98982. Mus musculus. 8 samples. Type: Expression profiling by array.
Identifying reference genes with stable expression from high throughput sequence data
GEO Series GSE40509. Thalassiosira pseudonana CCMP1335. 4 samples. Type: Expression profiling by high throughput sequencing.
Deciphering PFAS Potency: Cracking the Code with Gene Expression Profiles of Liver Toxic and Non-Liver-Toxic Reference Compounds
GEO Series GSE272576. Homo sapiens. 768 samples. Type: Other.
NanoString nCounter GX Cancer Reference Kit and the custom made ITESM (14 genes associated with prostate cancer)
GEO Series GSE67248. Homo sapiens. 15 samples. Type: Expression profiling by array.
AKIRIN1 is a suitable reference gene in natural killer cells and granulocytes from patients with SIRS and septic shock [NK cells]
GEO Series GSE123730. Homo sapiens. 45 samples. Type: Expression profiling by array.
AKIRIN1 is a suitable reference gene in natural killer cells and granulocytes from patients with SIRS and septic shock [granulocytes]
GEO Series GSE123729. Homo sapiens. 42 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.