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248
datasets available to search
ShareScore release 0.9.0
Dataset results
248 results for “retrotransposons”
Microarray-based global mapping of integration sites of retrotransposon, intracisternal A-particle, in mouse genome
GEO Series GSE9572. Mus musculus. 10 samples. Type: Genome variation profiling by genome tiling array.
Reconstructing de novo silencing of an active plant retrotransposon: dynamics, mechanisms, biological implications
GEO Series GSE43412. Arabidopsis thaliana. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
High nucleotide substitution rates associated with retrotransposon proliferation drive dynamic secretome evolution in smut pathogens
GEO Series GSE206526. Ustilago hordei. 6 samples. Type: Expression profiling by high throughput sequencing.
Postmortem Cortex Samples Identify Distinct Molecular Subtypes of ALS: Retrotransposon Activation, Oxidative Stress, and Activated Glia
GEO Series GSE124439. Homo sapiens. 176 samples. Type: Expression profiling by high throughput sequencing.
Histone chaperone CAF-1 is essential for retrotransposon silencing by mediating histone H4K20me3 deposition in mouse preimplantation embryos
GEO Series GSE69260. Mus musculus. 8 samples. Type: Expression profiling by array.
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons [ATAC-Seq]
GEO Series GSE126541. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons [RNA-Seq]
GEO Series GSE126542. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
RNAi triggered by specialized machinery silences developmental genes and retrotransposons
GEO Series GSE41643. Schizosaccharomyces pombe; Drosophila melanogaster. 17 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Genome binding/occupancy profiling by array.
Specific functions for the fission yeast Sirtuins Hst2 and Hst4 in gene regulation and retrotransposon silencing
GEO Series GSE6114. Schizosaccharomyces pombe. 77 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array.
Retrotransposon reactivation and mobilization upon deletions of megabase-scale KRAB zinc finger gene clusters in mice
GEO Series GSE115291. Mus musculus. 280 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
DNA methylation-sensitive transcription factors and bivalency orchestrate transposon expression in the absence of DNA methylation [Retrotransposon expression in conditional NRF1 mutant testes]
GEO Series GSE282279. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
The spatial and temporal dynamics of the nuclear RNAi-targeted retrotransposon transcripts in Caenorhabditis elegans [RNA-seq]
GEO Series GSE118379. Caenorhabditis elegans. 12 samples. Type: Expression profiling by high throughput sequencing.
Genomic properties of variably-methylated retrotransposons in mouse
GEO Series GSE159110. Mus musculus. 21 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA
GEO Series GSE128932. Arabidopsis thaliana. 48 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome
GEO Series GSE136968. Hylobates lar; Hylobates muelleri; Nomascus gabriellae; Nomascus leucogenys; Hylobates pileatus; Hoolock leuconedys; Symphalangus syndactylus; Hylobates moloch. 60 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq]
GEO Series GSE72379. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
RNA transcription and degradation of Alu retrotransposons depends on sequence features and evolutionary history
GEO Series GSE185485. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Enhancer adoption by an LTR retrotransposon generates viral-like particles causing developmental limb phenotypes
GEO Series GSE246755. Mus musculus. 43 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Enhancer adoption by an LTR retrotransposon generates viral-like particles causing developmental limb phenotypes [scRNA-seq]
GEO Series GSE246754. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Lysosomal catabolic activity governs the exit of the murine totipotent 2-cell state by silencing early-embryonic retrotransposons
GEO Series GSE247083. Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.