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Fig.ç12.A mblyops paci cus sp. nov., A, E, F, H–J, holotype, male (NSMT-Cr 21355); B–D, G, one of paratypes, female (NSMT-Cr 21357). A, B, anterior part of body (dorsal); C, eyeplate (right, dorsal); D, antennular peduncle (right, dorsal); E, antenna (right, dorsal); F, apical part of antennal scale (right, dorsal); G, antenna (right, dorsal); H, mandible and mandibular palp (right), I, outer lobe of maxillule (right); J, maxilla (right). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç12.A mblyops paci cus sp. nov., A, E, F, H–J, holotype, male (NSMT-Cr 21355); B–D, G, one of paratypes, female (NSMT-Cr 21357). A, B, anterior part of body (dorsal); C, eyeplate (right, dorsal); D, antennular peduncle (right, dorsal); E, antenna (right, dorsal); F, apical part of antennal scale (right, dorsal); G, antenna (right, dorsal); H, mandible and mandibular palp (right), I, outer lobe of maxillule (right); J, maxilla (right).

opencc-by-4.0May 2012View details →
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Fig.ç5.A mblyops izuensis sp. nov., holotype, male (NSMT-Cr 21348). A, eyeplate (le); B, antennular peduncle (le, dorsal); C, antenna (le, dorsal); D, antennal peduncle (le, dorsal); E, mandible and mandibular palp (le); F, maxillule (le); G, maxilla (le); H, rst thoracopod (le); I, second thoracopodal endopod (right); J, K, genital organ and sternal process. in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç5.A mblyops izuensis sp. nov., holotype, male (NSMT-Cr 21348). A, eyeplate (le); B, antennular peduncle (le, dorsal); C, antenna (le, dorsal); D, antennal peduncle (le, dorsal); E, mandible and mandibular palp (le); F, maxillule (le); G, maxilla (le); H, rst thoracopod (le); I, second thoracopodal endopod (right); J, K, genital organ and sternal process.

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Fig.ç7.A mblyops kashimensis sp. nov., holotype, female (NSMT-Cr 21350). A, anterior part of body (dorsal); B, antenna (right, dorsal); C, antennal peduncle (right, lateral); D, mandible and mandibular palp (right); E, maxillule (right); F, maxilla (right); G, labrum (ventral); H, uropod and telson (dorsal); I, proximal part of uropodal endopod (right, ventral); J, posterior part of telson (dorsal). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç7.A mblyops kashimensis sp. nov., holotype, female (NSMT-Cr 21350). A, anterior part of body (dorsal); B, antenna (right, dorsal); C, antennal peduncle (right, lateral); D, mandible and mandibular palp (right); E, maxillule (right); F, maxilla (right); G, labrum (ventral); H, uropod and telson (dorsal); I, proximal part of uropodal endopod (right, ventral); J, posterior part of telson (dorsal).

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Fig.ç4.A mblyops australiensis sp. nov., holotype, male (NSMT-Cr 21346). A, rst thoracopodal endopod (right); B, second thoracopod (right); C, rst thoracopodal exopod (right); D, rst pleopod (right); E, fourth pleopod (le); F, uropod and telson (dorsal); G, uropodal endopod (right, ventral); H, telson (dorsal). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç4.A mblyops australiensis sp. nov., holotype, male (NSMT-Cr 21346). A, rst thoracopodal endopod (right); B, second thoracopod (right); C, rst thoracopodal exopod (right); D, rst pleopod (right); E, fourth pleopod (le); F, uropod and telson (dorsal); G, uropodal endopod (right, ventral); H, telson (dorsal).

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Fig.ç6.A mblyops izuensis sp. nov., holotype, male (NSMT-Cr 21348). A–D, rst to fourth male pleopods (A, B, right; C, D le); E, distal part of endopod of fourth male pleopod (le); F, distal part of exopod of fourth male pleopod (le); G, h male pleopod (right); H, uropod and telson (dorsal); I, proximal part of uropodal endopod (le, ventral); J, posterior part of telson (dorsal). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç6.A mblyops izuensis sp. nov., holotype, male (NSMT-Cr 21348). A–D, rst to fourth male pleopods (A, B, right; C, D le); E, distal part of endopod of fourth male pleopod (le); F, distal part of exopod of fourth male pleopod (le); G, h male pleopod (right); H, uropod and telson (dorsal); I, proximal part of uropodal endopod (le, ventral); J, posterior part of telson (dorsal).

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Fig.ç3.A mblyops australiensis sp. nov., holotype, male (NSMT-Cr 21346). A, anterior part of body (dorsal); B, eyeplate (right, dorsal); C, antennular peduncle (right, ventral); D, antenna (right, dorsal); E, antennal peduncle (right, lateral); F, mandible and mandibular palp (right); G, outer lobe of maxillule (right); H, maxilla (right); I, labrum (ventral). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç3.A mblyops australiensis sp. nov., holotype, male (NSMT-Cr 21346). A, anterior part of body (dorsal); B, eyeplate (right, dorsal); C, antennular peduncle (right, ventral); D, antenna (right, dorsal); E, antennal peduncle (right, lateral); F, mandible and mandibular palp (right); G, outer lobe of maxillule (right); H, maxilla (right); I, labrum (ventral).

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Fig.ç2.A mblyops amamiensis sp. nov., A–F, H, holotype, female (NSMT-Cr 21344); G, paratype, female (NSMT-Cr 21345). A, rst thoracopod (right); B, second thoracopod (right); C, fourth thoracopodal endopod (right); D, h thoracopod (right); E, uropod and telson (dorsal); F, uropodal endopod (right, ventral); G, uropodal endopod (le, ventral); H, posterior part of telson (dorsal). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç2.A mblyops amamiensis sp. nov., A–F, H, holotype, female (NSMT-Cr 21344); G, paratype, female (NSMT-Cr 21345). A, rst thoracopod (right); B, second thoracopod (right); C, fourth thoracopodal endopod (right); D, h thoracopod (right); E, uropod and telson (dorsal); F, uropodal endopod (right, ventral); G, uropodal endopod (le, ventral); H, posterior part of telson (dorsal).

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Fig.ç1.A mblyops amamiensis sp. nov., holotype, female (NSMT-Cr 21344). A, anterior part of body (dorsal); B, eyeplate (le, dorsal); C, anterior part of eyeplate (le, lateral); D, antennular peduncle (le, dorsal); E, antenna (le, ventral); F, antennal peduncle (le, lateral); G, labrum (ventral); H, mandibular palp (right), I, maxilla (right). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç1.A mblyops amamiensis sp. nov., holotype, female (NSMT-Cr 21344). A, anterior part of body (dorsal); B, eyeplate (le, dorsal); C, anterior part of eyeplate (le, lateral); D, antennular peduncle (le, dorsal); E, antenna (le, ventral); F, antennal peduncle (le, lateral); G, labrum (ventral); H, mandibular palp (right), I, maxilla (right).

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Fig.ç21.A mblyops timorensis sp. nov., holotype, male (NSMT-Cr 21366). A, rst thoracopodal endopod (right); B, second thoracopodal endopod (le); C, seventh thoracopodal exopod (le); D, genital organ (le, lateral); E, second pleopod (right); F, fourth pleopod (right); G, uropod and telson (dorsal); H, uropodal endopod (right, ventral); I, telson (dorsal). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç21.A mblyops timorensis sp. nov., holotype, male (NSMT-Cr 21366). A, rst thoracopodal endopod (right); B, second thoracopodal endopod (le); C, seventh thoracopodal exopod (le); D, genital organ (le, lateral); E, second pleopod (right); F, fourth pleopod (right); G, uropod and telson (dorsal); H, uropodal endopod (right, ventral); I, telson (dorsal).

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Fig.ç23.A mblyops sp. 2, female (NSMT-Cr 21368). A, anterior part of body (dorsal); B, antennal scale (right, dorsal); C, apical part of antennal scale (right, dorsal); D, third thoracopodal endopod (right); E, distal part of the same limb (right); F, fourth thoracopod (right); G, distal part of the same limb (right); H, uropodal endopod (le, ventral); I, anterior half of telson. in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç23.A mblyops sp. 2, female (NSMT-Cr 21368). A, anterior part of body (dorsal); B, antennal scale (right, dorsal); C, apical part of antennal scale (right, dorsal); D, third thoracopodal endopod (right); E, distal part of the same limb (right); F, fourth thoracopod (right); G, distal part of the same limb (right); H, uropodal endopod (le, ventral); I, anterior half of telson.

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Fig.ç14.A mblyops sagamiensis sp. nov., holotype, female (NSMT-Cr 21361). A, anterior part of body (dorsal); B, eyeplate (le, dorsal); C, eyeplate (le, lateral); D, antenna (le, dorsal); E, antennal peduncle (le, lateral); F, mandible and mandibular palp (le); G, maxillule (le); H, maxilla (right); I, labrum (ventral); J, rst thoracopodal endopod (le). in The Genus Amblyops (Crustacea: Mysida: Mysidae: Erythropinae) from East Asia and Australia, with Descriptions of Ten New Species

Fig.ç14.A mblyops sagamiensis sp. nov., holotype, female (NSMT-Cr 21361). A, anterior part of body (dorsal); B, eyeplate (le, dorsal); C, eyeplate (le, lateral); D, antenna (le, dorsal); E, antennal peduncle (le, lateral); F, mandible and mandibular palp (le); G, maxillule (le); H, maxilla (right); I, labrum (ventral); J, rst thoracopodal endopod (le).

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Text-fig. 3. Progonomys morganae molars from the upper part of the Nagri Formation. a) YGSP 33180, holotype, from Y 450 and b) 54091 from Y 450; both left M1 with buccal side upward. c) 34159 from Y259; and d) 36168 from Y 311, left and right m1, respectively, with lingual side upward. Scale for all is 1 mm. in Early Late Miocene Murine Rodents From The Upper Part Of The Nagri Formation, Siwalik Group, Pakistan, With A New Fossil Calibration Point For The Tribe Apodemurini (Apodemus/Tokudaia)

Text-fig. 3. Progonomys morganae molars from the upper part of the Nagri Formation. a) YGSP 33180, holotype, from Y 450 and b) 54091 from Y 450; both left M1 with buccal side upward. c) 34159 from Y259; and d) 36168 from Y 311, left and right m1, respectively, with lingual side upward. Scale for all is 1 mm.

opencc-by-4.0Aug 2017View details →
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FIG. 14. A, right m1 in New ctenodactyloid rodents from the Erlian Basin, Nei Mongol, China, and the phylogenetic relationships of Eocene Asian ctenodactyloids

FIG. 14. A, right m1 or m2 of Yuomys sp. A (V17805); B, right M3 of Yuomys sp. B (V17806); C, right m3 of Yuomys sp. C (V17807).

opencc-by-4.0Mar 2015View details →
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Figures 32–35. Pindamoraria boraceiae, female allotype. Fig. 32. Right leg 2 endopodite, frontal view. Fig. 33. Left leg 3 endopodite, frontal view. Fig. 34. Left leg 4 endopodite, frontal view. Fig. 35. Right leg 4 in Pindamoraria boraceiae, a new genus and species of freshwater Canthocamptidae (Copepoda, Harpacticoida) from Brazil

Figures 32–35. Pindamoraria boraceiae, female allotype. Fig. 32. Right leg 2 endopodite, frontal view. Fig. 33. Left leg 3 endopodite, frontal view. Fig. 34. Left leg 4 endopodite, frontal view. Fig. 35. Right leg 4 endopodite, caudal view. Scales as indicated in figure.

opencc-by-4.0Sep 2003View details →
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Рис. 5–10. Pterostichus (Petrophilus) magoides, этикетки и генитаΛии самца. 5 – этикетки гоΛотипа; 6 – этикетки паратипа; 7 – энΔофаΛΛус, виΔ сΛева (экземпΛяр из Рахмановского Λесничества, Казахстан); 8–9 – меΔиаΛьная ΔоΛя эΔеагуса (экземпΛяр с Курчумского хребта, Казахстан): 8 – виΔ сΛева, 9 – виΔ сверху; 10 – правая парамера, виΔ сбоку (этот же экземпΛяр). Figs 5–10. Pterostichus (Petrophilus) magoides, labels and male genitalia. 5 – labels of the holotype; 6 – labels of the paratype; 7 – endophallus, left view (specimen from the Rakhmanovskoe Forestry, Kazakhstan); 8–9 – median lobe of aedeagus (specimen from the Kurchum Mountain Range, Kazakhstan): 8 – left view, 9 – dorsal view; 10 – right paramere, lateral view (the same specimen). in To the systematic position of Pterostichus (Petrophilus) magoides (Straneo, 1937) (Coleoptera: Carabidae) from the Altai Mountains

Рис. 5–10. Pterostichus (Petrophilus) magoides, этикетки и генитаΛии самца. 5 – этикетки гоΛотипа; 6 – этикетки паратипа; 7 – энΔофаΛΛус, виΔ сΛева (экземпΛяр из Рахмановского Λесничества, Казахстан); 8–9 – меΔиаΛьная ΔоΛя эΔеагуса (экземпΛяр с Курчумского хребта, Казахстан): 8 – виΔ сΛева, 9 – виΔ сверху; 10 – правая парамера, виΔ сбоку (этот же экземпΛяр). Figs 5–10. Pterostichus (Petrophilus) magoides, labels and male genitalia. 5 – labels of the holotype; 6 – labels of the paratype; 7 – endophallus, left view (specimen from the Rakhmanovskoe Forestry, Kazakhstan); 8–9 – median lobe of aedeagus (specimen from the Kurchum Mountain Range, Kazakhstan): 8 – left view, 9 – dorsal view; 10 – right paramere, lateral view (the same specimen).

opencc-by-4.0Mar 2022View details →
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FIGURE 22 Hyalella solida Chevreux, 1907. A, male right gnathopod I in The Hyalella species flock of Lake Titicaca (Crustacea: Amphipoda): perspectives and drawbacks of DNA-based identiFIcation

FIGURE 22 Hyalella solida Chevreux, 1907. A, male right gnathopod I, medial; B, inset of distal portion of latter, medial; C, disarticulated left maxilliped, anterior (= dorsal). Scale bars: 0.2 mm (A); 0.1 mm (B, C).

opencc-by-4.0Jun 2021View details →
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FIGURE 24 Hyalella solida Chevreux, 1907, male. A–B, right pereiopod V in The Hyalella species flock of Lake Titicaca (Crustacea: Amphipoda): perspectives and drawbacks of DNA-based identiFIcation

FIGURE 24 Hyalella solida Chevreux, 1907, male. A–B, right pereiopod V, lateral (coxal gill omitted); C–D, right pereiopod VI, lateral; E–F, right pereiopod VII, lateral. Scale bars: 0.5 mm (A, C, E); 0.1 mm (B, D, F).

opencc-by-4.0Jun 2021View details →
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The Right Atrium Affects In Silico Arrhythmia Vulnerability in Both Atria

<h1>The Right Atrium Affects In Silico Arrhythmia Vulnerability in Both Atria</h1> <div>&nbsp;</div> <div><strong>Authors:</strong> Patricia Mart&iacute;nez D&iacute;az, Jorge S&aacute;nchez, Nikola Fitzen, Ursula Ravens, Olaf D&ouml;ssel, Axel Loewe</div> <div>patricia.martinez@kit.edu / publications@ibt.kit.edu</div> <div><a href="https://doi.org/10.1016/j.hrthm.2024.01.047">doi:10.1016/j.hrthm.2024.01.047</a></div> <div>&nbsp;</div> <div>This dataset contains 8 biatrial meshes and 8 monoatrial (left-only) meshes, derived from MRI and CT segmentations with annotations and fibers, ready for simulations in the cardiac electrophysiology simulator <a href="https://doi.org/10.1016/j.cmpb.2021.106223">openCARP</a>. We also provide the code to reproduce a total of 576 reentries by reading the selected parameters.par and state.roe files. The meshes were generated using <a href="https://github.com/KIT-IBT/AugmentA">AugmentA code</a> and the simulated reentries were induced following the <a href="https://doi.org/10.3389/fphys.2021.656411">PEERP protocol</a> by Azzolin et al. A carputils bundle containing the <a href="https://doi.org/10.35097/1830">openCARP experiment</a>, along with all associated parameters, is publicly available. The original cardiac segmentations are part of Krueger M. et al. Personalization of atrial anatomy and electrophysiology as a basis for clinical modeling of radio-frequency ablation of atrial fibrillation <a href="https://doi.org/10.1109/tmi.2012.2201948">doi:10.1109/TMI.2012.2201948</a></div> <div>&nbsp;</div> <h2>Folder structure</h2> <div>The code is located in the `src` folder, the meshes in the `data` folder and the reentries in the `results` folder. &nbsp;</div> <div>```</div> <div>KIT_2/</div> <div>|-- src/</div> <div>&nbsp; &nbsp;|-- run.py</div> <div>&nbsp; &nbsp;|-- induceReentry.py</div> <div>&nbsp; &nbsp;|-- getStimPoints.py</div> <div>&nbsp; &nbsp;|-- element_tag.csv</div> <div>&nbsp; &nbsp;|-- al_mk_H.par</div> <div>&nbsp; &nbsp;|-- requirements.txt</div> <div>&nbsp; &nbsp;|-- reproduceReentry.py</div> <div>|-- data/</div> <div>&nbsp; &nbsp;|-- meshes/</div> <div>&nbsp; &nbsp; &nbsp; &nbsp;|-- P1/ &nbsp;</div> <div>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; |-- monoatrial/&nbsp;</div> <div>&nbsp; &nbsp; &nbsp; &nbsp;|-- biatrial/</div> <div>.</div> <div>.</div> <div>.</div> <div>&nbsp; &nbsp; &nbsp; &nbsp;|-- P8 &nbsp;&nbsp;</div> <div>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; |-- monoatrial/&nbsp;</div> <div>&nbsp; &nbsp; &nbsp; &nbsp;|-- biatrial/</div> <div>|-- results/</div> <div>|-- MESH_SCENARIO_STATE_CHAMBER/ (e.g P1_bi_M_LA)&nbsp;</div> <div>|-- point_X_beat_Y</div> <div>| &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;</div> <div>|-- README.md</div> <div>```</div> <div>&nbsp;</div> <div>`src`: contains the source files needed to run PEERP protocol&nbsp;</div> <div> <ul> <li>`run.py` This is the main function to run the pacing protocol (not needed to run if reentries are only reproduced, check reproduceReentry.py)</li> <li>`induceReentry.py` Contains a list of pacing protocols. The PEERP protocol is included here</li> <li>`getStimPoints.py` Extract the stimulation points</li> <li>`element_tag.csv` Region tag numbering</li> <li>`al_mk_H.par` Par file with ionic scaling factors for three states; H:Healthy, M:Mild, S:Severe</li> <li>`requirements.txt` Packages to create the virtual enviroment. (This was my output of ```pip3 list&gt; requirements.txt```)</li> <li>`reproduceReentry.py` Reentries can be reproduced given a selected folder where the .par and .roe files are stored.</li> </ul> </div> <div>&nbsp;</div> <div>`data`: contains the `meshes` folder with the bilayer meshes in openCARP (.elem, .lon and .pts) and .vtk format. Synthetic fibrotic distributions are included in the the .regele files.</div> <div> <ul> <li>`meshes/P1/monoatrial/LA_stim_points.txt` stimulation points for the PEERP protocol</li> <li>`meshes/P1/monoatrial/LA_bilayer_with_fiber_elems_not_conductive_M.regele` Element ids corresponding to synthetic fibrotic distribution with respect to remodeling states M and S. H state was modelled without fibrosis</li> </ul> </div> <div>&nbsp;</div> <h2>Reproduce the reentries&nbsp;</h2> <div>You can generate the .igb file of a specific reentry by selecting the corresponding folder in the results directory. An example is given to reproduce the reentry in P1_bi_M_LA/point_0_beat_2/reproduce_reentry.igb. Select the folder `--par_file_directory`and set `--tend` to define the duration of the simulation in miliseconds.</div> <div>_HINT: We recommend keeping the folder structure so that the other parameters, such as: mesh, scenario, state and chamber, can be read from the --par_file_directory. Otherwise, the meshes and results directories need to be modified._</div> <div>```</div> <div>cd src/</div> <div>reproduceReentry.py &nbsp;--par_file_directory ../results/P1_bi_M_LA/point_0_beat_2 --tend 1500</div> <div>&nbsp;</div> <div>```</div> <div>![Transmembrane Voltage](./results/P1_bi_M_LA/reentry_with_colorbar.png)</div> <div>&nbsp;</div> <div>&nbsp;</div> <h2>Preparation before running the PEERP pacing protocol</h2> <div>&nbsp;</div> <div>Follow the next steps if you want to run the PEERP pacing protocol, either for the provided meshes or for your own meshes. To run the PEERP protocol in a controlled environment, it is recommended, before running the run.py, to create a virtual environment. Go to your terminal and type:&nbsp;</div> <div>```</div> <div>cd src/</div> <div>python3 -m venv ./myEnv</div> <div>source ./myEnv/bin/activate</div> <div>pip3 install -r requirements.txt</div> <div>```</div> <div>&nbsp;</div> <div>You need to add carputils to your `PATH`. You can run the code in the terminal or use and IDE to debug the code.&nbsp;</div> <div>Note: I am using PyCharm 2020.3. and in Settings --&gt; Python interpreter --&gt; show all and then in the (+) symbol, add the path to carputils there:</div> <div>&nbsp;</div> <div>Otherwise you can add this extra lines at the beginning of `run.py``:</div> <div>```</div> <p># Replace '/path/to/carputils' with the actual path to your carputils package</p> <p>carputils_path = '/path/to/carputils'</p> <p># Add the carputils path to sys.path</p> <div>sys.path.append(carputils_path)</div> <div>```</div> <h2>Run the PEERP protocol</h2> <div>&nbsp;</div> <div>The following example runs the PEERP from a single stimulation point. If you want to run PEERP over all the points, simply add the flag --run_all_points 1&nbsp;</div> <div>```</div> <div>cd src/</div> <div>python3 run.py --giL 0.4166 --geL 1.458 --cv 0.8 --mesh monoatrial --protocol PEERP --pacing 122718 --stim_file LA_stim_points.txt --geometry LA_bilayer_with_fiber_um --cell_bcl 500 --model Courtemanche --ionic_prop_file al_mk_S.par --max_n_beats_PEERP 1 --overwrite-behaviour overwrite</div> <div>```</div> <div>&nbsp;</div> <h2>Running your own experiment and making your own changes</h2> <div>Extract the stimulation points on your mesh, where the PEERP protocol will be run:&nbsp;</div> <div>```</div> <div>python3 getStimPoints.py &nbsp; --mesh monoatrial --tolerance 20000 --stim_file LA_stim_points.txt --chamber LA</div> <div>```</div> <div>&nbsp;</div> <div>Tune conduction velocity (CV) and conductivites. The code expects the intracellular end extracellular longitudinal conductivity values as an input. We used `tuneCV` to fit CV=0.7m/s with dx=0.4mm and dt=20us</div> <div>If you want to adjust the values, run in the terminal:</div> <div>```</div> <div>tuneCV --resolution 400 --model Courtemanche --velocity 0.7 --converge True --sourceModel monodomain --surf True --dt 20</div> <div>```</div> <div>You can provide the location of the start of the activation by selecting the desired point ID:</div> <div> <ul> <li>Load the mesh in Paraview (or Meshalyzer)</li> <li>click on the ? symbol</li> <li>save the ID and change the `--pacing` argument&nbsp;</li> </ul> </div> <div>&nbsp;</div> <div>Call `run.py` with a new mesh. The protocol starts by prepacing the mesh and then using the last beat as initial condition tu run the PEERP.</div> <div>Be aware that for a monoatrial mesh you might need to give the new id for the location of the earliest activation. Change `12345` to your desired point ID.</div> <div>```</div> <div>python3 run.py --mesh newMesh --pacing 12345 --protocol prepace --stim_file LA_stim_points.txt</div> <div>```</div> <div>&nbsp;</div> <div>Run the protocol with different electrical remodelling stage. You can change the .par file or select one file from the three provided:&nbsp;</div> <div>```</div> <div>python3 run.py --mesh newMesh --pacing 12345 --protocol PEERP --stim_file LA_stim_points.txt --args.ionic_prop 'l_mk_M.par'</div> <div>```</div> <div>&nbsp;</div> <div>You can also try to run a biatrial example. The biatrial mesh is also provided. You need to extract the points on the RA surface using `getStimPoints.py`, to run the RA experiment:&nbsp;</div> <div>```</div> <div>cd src</div> <div>python3 getStimPoints.py &nbsp; --mesh biatrial --tolerance 20000 --stim_file RA_stim_points.txt --chamber RA</div> <div>```</div> <div>Then run PEERP twice, one per each chamber:</div> <div>&nbsp;</div> <div>```</div> <div>python3 run.py --mesh biatrial --geometry LA_RA_bilayer_with_fiber --pacing 12345 --stim_file LA_endo_2cm.txt --args.ionic_prop 'l_mk_M.par'</div> <div>python3 run.py --mesh biatrial --geometry LA_RA_bilayer_with_fiber --stim_file LA_stim_points.txt --args.ionic_prop 'l_mk_M.par'</div> <p>&nbsp;</p>

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Text-fig. 4. Monocots. a, b: Large monocot leaf part and counterpart, UAPC-ALTA S 17955A, B. a: Wide leaf showing entire margin at left. b: Counterpart showing dark wide midrib, and and secondaries parallel to one another, arising at low acute angle. c–e: Monocot leaf with parallel venation. c: Overview of elongate monocot leaf with parallel veins horizontal and linear to oval structures and smaller leaf fragment of same type lacking them (at lower right), UAPC-ALTA S 59491. d: Higher magnification of the smaller fragment with weak cross veins. e: Higher magnification of larger specimen with linear to oval structures between parallel veins. f, g: Monocot leaf with parallel venation. Fig. (f) shows higher magnification and (g) shows overview, BBM-PAL-P000009. Scale bars: a, b = 5 cm, c = 4 cm, d–f = 1 cm, g = 2 cm. in The Early Eocene Flora Of Horsefly, British Columbia, Canada And Its Phytogeographic Significance

Text-fig. 4. Monocots. a, b: Large monocot leaf part and counterpart, UAPC-ALTA S 17955A, B. a: Wide leaf showing entire margin at left. b: Counterpart showing dark wide midrib, and and secondaries parallel to one another, arising at low acute angle. c–e: Monocot leaf with parallel venation. c: Overview of elongate monocot leaf with parallel veins horizontal and linear to oval structures and smaller leaf fragment of same type lacking them (at lower right), UAPC-ALTA S 59491. d: Higher magnification of the smaller fragment with weak cross veins. e: Higher magnification of larger specimen with linear to oval structures between parallel veins. f, g: Monocot leaf with parallel venation. Fig. (f) shows higher magnification and (g) shows overview, BBM-PAL-P000009. Scale bars: a, b = 5 cm, c = 4 cm, d–f = 1 cm, g = 2 cm.

opencc-by-4.0Dec 2023View details →
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FIGURE 4. Right Ectocuneiform. A in Occurrence of the sabretooth cat Smilodon populator (Felidae, Machairodontinae) in the Cuvieri cave, eastern Brazil

FIGURE 4. Right Ectocuneiform. A) Distal view; B) Proximal view; C) Internal view; D) External view; E) Dorsal view; F) Plantar view. A1-F1) Adult lioness (Panthera leo); A2-F2) Smilodon populator. Scale bar equals 20 mm.

opencc-by-4.0May 2020View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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