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Water Depth in St. Louis River Estuary, Superior WI, Manoomin Beds, 2020
This dataset contains summer water depth data from 2020, at four locations in the St. Louis River Estuary. Water depth was measured within manoomin/wild rice beds at each site using pressure loggers. This data supports ongoing work at Lake Superior National Estuarine Research Reserve to understand ecological impacts to wetland condition and supports partners conducting manoomin restoration in the estuary. Data could be used with other wild rice or wetland plant research projects, or generally to understand differences in water depth fluctuation in different areas of the estuary.
Interagency Ecological Program: Fish catch and water quality data from the Sacramento River floodplain and tidal slough, collected by the Yolo Bypass Fish Monitoring Program, 1998-2024.
Largely supported by the Interagency Ecological Program (IEP), California Department of Water Resources (DWR) has operated a fish monitoring program in the Yolo Bypass, a seasonal floodplain and tidal slough, since 1998. The objectives of the Yolo Bypass Fish Monitoring Program (YBFMP) are to: 1. Collect baseline data on water quality, chlorophyll, lower trophic level biota, and fish in the Yolo Bypass to monitor spatial and temporal changes in trends and abundance. 2. Analyze and communicate Yolo Bypass data with interested parties and the scientific and management communities to address pertinent management-related questions. 3. Provide technical expertise on Yolo Bypass aquatic ecology and monitoring and sampling methods. The YBFMP operates a rotary screw trap and fyke trap and conducts biweekly beach seine and lower trophic surveys in addition to maintaining water quality instrumentation in the bypass. Only juvenile and adult fish catch with associated water quality are presented in this dataset. The rotary screw trap sampling objectives are to: (1) examine species abundance and life stage of juvenile outmigrants and resident small-bodied fishes, (2) identify temporal and spatial patterns in fish abundance and species composition, and (3) examine the effect of physical and environmental conditions on these patterns. The fyke trap sampling objectives are to: (1) examine abundance of migrating and resident adult fishes, (2) identify temporal and spatial patterns in fish abundance and species composition, especially with regard to anadromous species, (3) examine the effect of physical and environmental conditions on these patterns, and (4) provide data on the timing and duration of species captured in the Yolo Bypass for comparison to those captured in other Sacramento Valley tributaries. The beach seine surveys are conducted in the Yolo Bypass’s perennial channel (Toe Drain), inundated floodplain, disconnected inundated ponds, and perennial ponds. The objectives o
Interagency Ecological Program: Zooplankton catch and water quality data from the Sacramento River floodplain and tidal slough, collected by the Yolo Bypass Fish Monitoring Program, 1998-2018
Largely supported by the Interagency Ecological Program (IEP), the California Department of Water Resources (DWR) has operated a fisheries and invertebrate monitoring program in the Yolo Bypass since 1998. The main objectives of the Yolo Bypass Fish Monitoring Program (YBFMP) are to collect baseline data on lower trophic levels (phytoplankton, zooplankton and insect drift), juvenile and adult fish, hydrology, and water quality parameters. As the Yolo Bypass has been identified as a high restoration priority by numerous regulatory agencies, these baseline data are critical for evaluating success of future restoration projects. In addition, the data have already served to increase our understanding of the role of the Yolo Bypass in the life history of native fishes, and its ecological function in the San Francisco Estuary. Zooplankton are an important component in the diet of larval, juvenile, and small adult fishes within the San Francisco Estuary, including Delta Smelt, juvenile Chinook Salmon, Striped Bass, and Sacramento Splittail. The YBFMP collects zooplankton year-round from two sites. Since 2011, samples have been collected biweekly (every other week) to weekly (during floodplain inundation) using 150- and 50- micrometer mesh plankton nets. Zooplankton are identified and enumerated by contractors (currently BSA Environmental Services). The goals of the zooplankton monitoring program are to compare the seasonal variation in species densities and trends between (1) the Sacramento River channel, and (2) the Yolo Bypass, the river’s seasonal floodplain. Data on zooplankton catch and associated water quality parameters are presented in this dataset.
Interagency Ecological Program: Drift invertebrate and ichthyoplankton catch and water quality from the Sacramento River channel, and Sacramento River floodplain and tidal slough, collected by the Yolo Bypass Fish Monitoring Program, 1998-2022
Largely supported by the Interagency Ecological Program (IEP), California Department of Water Resources (DWR) has operated a fish monitoring program in the Yolo Bypass, a seasonal floodplain and tidal slough, since 1998. The objectives of the Yolo Bypass Fish Monitoring Program (YBFMP) are to: 1. Collect baseline data on water quality, chlorophyll, lower trophic level biota, and fish in the Yolo Bypass to monitor spatial and temporal changes in trends and abundance. 2. Analyze and communicate Yolo Bypass data with interested parties and the scientific and management communities to address pertinent management-related questions. 3. Provide technical expertise on Yolo Bypass aquatic ecology and monitoring and sampling methods. Aquatic and terrestrial insects are an important component in the diet of juvenile and adult fishes within the San Francisco Estuary, including two important native fishes: juvenile Chinook Salmon and Sacramento Splittail. The YBFMP collects drift invertebrates year-round from two sites. Currently, samples are collected biweekly (every other week) to weekly (during floodplain inundation) using a rectangular aquatic drift net that sits at the surface of the water. Invertebrates are identified and enumerated by contractors (currently EcoAnalysts, Inc.). The goals of the monitoring program are to compare the seasonal variations in densities and species trends of aquatic and terrestrial insects/non-insects within the Sacramento River channel and the Yolo Bypass, the river’s seasonal floodplain. Drift invertebrate Key findings to date include: (1) Chinook Salmon sampled in the floodplain had diets comprised of 90% Dipterans and zooplankton, with Chironomidae being the dominant Diptera family (Sommer et al., 2001), (2) The floodplain of the Yolo Bypass contains significantly higher densities of Diptera (Diptera densities being positively associated with flow) and terrestrial invertebrates than the adjacent Sacramento River (Sommer et al. 2001b: Sommer
Water Quality Data (Porewater) from the Shark River Slough, Everglades National Park (FCE LTER), Florida, USA, January 2001 - ongoing
Porewater samples are collected at Florida Coastal Everglades Long Term Ecological Research (FCE LTER) Program Shark River Slough sites SRS1b (not active), SRS1c (not active), SRS1d, SRS2, and SRS3 within the 1 m^2 aboveground sawgrass nondestructive biomass plots. Airstones connected to Tygon tubing are inserted 10-15 cm below the soil surface. Biannually during the wet season, Monoject 140cc syringes are used to collect at least 80 mL of porewater sample and after collection they are immediately placed in an ice filled cooler. The lab processing of these samples include salinity measurements using a YSI, and filtering the sample through a filter (Whatman GF/F from 2000 to 2017 and Whatman polydisc GW from 2017 to present) . Samples are analyzed for inorganic nutrients such as NO2-,NO3-,NH4+,SRP, and DOC. Dissolved nutrients are measured using standard rapid flow analyzer (RFA) techniques and DOC is quantified on a Shimadzu TOC Analyzer.
Water Quality Data (Extensive) from the Shark River Slough, Everglades National Park (FCE LTER), Florida, USA, October 2000 - ongoing
Water quality samples are being collected using ISCO autosamplers at all Florida Coastal Everglades Long Term Ecological Research Program (FCE LTER) wetland sites (that is, all sites except TS/Ph-9, 10, and 11). The autosamplers contain 24 1L bottles. Water is sampled by programming the autosamplers to take composite samples once every 3 days. These samples are a composite of four 250mL subsamples drawn every 18 hours (a sampling scheme that captures a dawn, noon, dusk, and midnight sample in every three day composite). The samples are collected every 3-4 weeks and analyzed for total phosphorus (TP), total nitrogen (TN), and salinity. When sites are visited to collect these samples, we also collect a grab sample that is immediately put on ice. A portion of these grab samples is filtered through a filter (Whatman GF/F from 2000 to 2017 and Whatman polydisc GW from 2017 to ongoing) immediately upon return to the lab, and the filtered samples are analyzed for inorganic nutrients such as NO2-, NO3-, NH4+, SRP, and DOC. The unfiltered fraction of these grab samples is analyzed for TP and TN. We use these monthly grab samples to generate relationships between TP and SRP, and between TN and NO2- + NO3- + NH4+. Dissolved nutrients are measured using standard rapid flow analyzer (RFA) techniques. TP is analyzed with a modified Solorzano and Sharp (1980) technique. TN is measured with an Antec TN analyzer, TOC and DOC are quantified on a Shimadzu TOC Analyzer, and salinity is measured with a YSI conductivity meter or refractometer. In January 2007 a 6 days interval began for SRS1d, SRS2 & SRS3; the ISCOs did not change their sampling scheduled, they kept collecting water sample every 18 hours and switching bottles every three days; once in the lab, the 3 days was turned into 6 days by combining two bottles into 2 liters container. In addition to the regular water quality monitoring, we use the rain level actuators at all freshwater sites to trigger water sampling after rain e
Water Quality Data (Grab Samples) from the Shark River Slough, Everglades National Park (FCE LTER), Florida, USA, May 2001 - ongoing
Water quality samples are being collected using ISCO autosamplers at all Florida Coastal Everglades Long Term Ecological Research (FCE LTER) Program wetland sites (that is, all sites except TS/Ph-9, 10, and 11). The autosamplers contain 24 1L bottles. Water is sampled by programming the autosamplers to take composite samples once every 3 days. These samples are a composite of four 250mL subsamples drawn every 18 hours (a sampling scheme that captures a dawn, noon, dusk, and midnight sample in every three day composite). The samples are collected every 3-4 weeks and analyzed for total phosphorus (TP), total nitrogen (TN), and salinity. When sites are visited to collect these samples, we also collect a grab sample that is immediately put on ice. A portion of these grab samples is filtered through a filter (Whatman GF/F from 2000 to 2017 and Whatman polydisc GW from 2017 to ongoing) immediately upon return to the lab, and the filtered samples are analyzed for inorganic nutrients such as NO2-, NO3-, NH4+, SRP, and DOC. The unfiltered fraction of these grab samples is analyzed for TP and TN. We use these monthly grab samples to generate relationships between TP and SRP, and between TN and NO2- + NO3- + NH4+. Dissolved nutrients are measured using standard rapid flow analyzer (RFA) techniques. TP is analyzed with a modified Solorzano and Sharp (1980) technique. TN is measured with an ANTEK 9000N analyzer, TOC and DOC are quantified on a Shimadzu TOC Analyzer, and salinity is measured with a YSI conductivity meter or refractometer. In January 2007 a 6 days interval began for SRS1d, SRS2 & SRS3; the ISCOs did not change their sampling scheduled, they kept collecting water sample every 18 hours and switching bottles every three days; once in the lab, the 3 days was turned into 6 days by combining two bottles into 2 liters container. In addition to the regular water quality monitoring, we use the rain level actuators at all freshwater sites to trigger water sampling after rai
Water Depths and Water Temperatures near Soil Surface from Shark River Slough, Everglades National Park (FCE LTER), Florida, USA, October 2000 - ongoing
Water depth (from October 2000 to present) and water temperature (from September 2021 to present) are recorded at least hourly at SRS1c (not active), SRS1d, SRS2, SRS3, SRS4, SRS5, and SRS6. Water depth is measured with pressure water level loggers (Infinities USA or HOBO) that record water height relative to the local soil surface. Water temperature near soil surface is measured with HOBO loggers. Note by IM (2021): The water meters at some of the SRS sites have been moved over the years as boardwalks have been reconstructed. There is no set survey datum for these sites, so it is impossible to correct the data to an actual datum. For hydrologic applications, it may be better to use water level data from USGS stations.
Bull shark catches, water temperatures, salinities, and dissolved oxygen levels in the Shark River Slough, Everglades National Park (FCE) , from May 2005 to May 2009
This dataset provides information on the catches of bull sharks in the Shark River Slough in relation to physical factors including dissolved oxygen, water temperature, salinity, and distance upstream. Analysis of data collected from 2005-2007 indicate that distance from the Gulf of Mexico and dissolved oxygen concentrations have the largest effects on bull shark catch rates. Data are presented for both young of the year sharks, which are concentrated in areas away from the main channel approximately 20km upstream, and older juvenile sharks which are found along the main channel at similar distances upstream. Salinity has a surprisingly weak impact on catches over the time frame initially investigated.
Water Levels and Porewater Temperature data from the Shark River and Taylor River Slough mangrove sites, Everglades National Park (FCE LTER), South Florida, USA: May 2001 - ongoing
Water levels for SRS4 are recorded at 1h intervals. Water level recorder is located in the mangrove forest approximately 80 m inland at Tarpon Bay. Water levels for SRS5 are recorded at 1h intervals. Water level recorder is located in the mangrove forest approximately 80 m at the Shark River Slough. Water levels for SRS6 are recorded at 1h intervals. Water level recorder is located in the mangrove forest approximately 80 m at the Shark River Slough. Water levels for SRS7 are recorded at 1h intervals. Water level recorder is located in the mangrove forest approximately 80 m at the Shark River Slough. Water levels for TS/Ph6a are recorded at 1h intervals. Water level recorder is located in the mangrove forest approximately 80 m inland at the Taylor River Slough. Water level recorder is located in between of two 20 by 20 m permanent monitoring plots. Water levels for TS/Ph7a are recorded at 1h intervals. Water level recorder is located in the mangrove forest approximately 60 m inland at the Taylor River Slough. Water level recorder is located in between of two 20 by 20 m permanent monitoring plots. Water levels for TS/Ph8 are recorded at 1h intervals. Water level recorder is located in the mangrove forests 40 m inland at the Joe Bay area. Water level recorder is located in between of two 20 by 20 m permanent monitoring plots. All water level data are measured by Florida International University.
Subsurface Water Temperatures taken in Shark River Slough and Taylor Slough, Everglades National Park (FCE LTER), Florida, USA, May 2010 - December 2015
At each site, two vertical columns of temperature sensors (107-L Temperature Probes, Campbell Scientific, Logan, Utah) were installed and connected to data loggers (CR1000 Dataloggers, Campbell Scientific, Logan, Utah). At each, one temperature sensor in a heat shield was installed 2 m above the ground surface. The remaining temperature sensors were installed at or below the ground surface, with the depths and depth intervals depending upon the total depth of the column. The data were collected hourly between May 19, 2010 and December 1, 2015.
Shark catches (longline), water temperatures, salinities, and dissolved oxygen levels, and stable isotope values in the Shark River Slough, Everglades National Park (FCE LTER), Florida, USA, May 2005 - ongoing
This dataset provides information on the catches of sharks in the Shark River Slough in relation to physical factors including dissolved oxygen, water temperature, salinity, and distance upstream. Analysis of data collected suggest that distance from the Gulf of Mexico and dissolved have the largest effects on shark catch rates, with most juvenile bull sharks being caught in Tarpon Bay. This dataset includes all sharks caught on longline gear, their morphometric data, and CNS stable isotope analysis for selected individuals.
Water Quality Data (Rainfall-driven autosampler) from the Shark River Slough, Everglades National Park (FCE LTER), Florida, USA, June 2003 - ongoing
Water quality samples are being collected using ISCO autosamplers at all freshwater sites: SRS1a (not active), SRS1c (not active), SRS1d, SRS2, and SRS3. Rain level actuators are used at the sites to trigger water sampling after rain events exceed a given threshold of duration and/or intensity. As currently programmed, when a rain event at a site exceeds the threshold of 2.5 cm per hour, the autosampler at that site collects a 1000mL sample 30 minutes later. The samples are retrieved from the site every 3-4 weeks and analyzed for total phosphorus (TP), total nitrogen (TN), and salinity. Salinity values were not taken consistently from 2000 to mid-2017; those values were replaced by -9999 in the data. See also Shark River Slough precipitation data package (knb-lter-fce.1092) and Shark River Slough extensive water quality data (knb-lter-fce.1072) on the FCE LTER website's data catalog or in the EDI repository.
Coupling between Sediment and Water Column Populations of Ammonia Oxidizing Thaumarchaeota in the Duplin River near Sapelo Island, Georgia
Populations of nitrifying organisms in the water column at Marsh Landing display a midsummer peak in the abundance of ammonia oxidizing Archaea (AOA) at the site, coinciding with a peak in nitrite concentration. Marsh Landing is at the mouth of the Duplin River, a dead-end tidal channel that drains an extensive area of salt marsh. While the lower Duplin River at Marsh Landing exchanges tidally with Doboy Sound and thus South Atlantic Bight (SAB) coastal waters, water in its upper reaches has a residence time of weeks. The work reported here had two goals: 1) test the hypothesis that the surrounding salt marsh is the source of nitrifiers seen in water samples taken at Marsh Landing; and 2) compare the seasonal dynamics of nitrifiers in surficial sediments with those in the water column. We sampled 6 stations along the ~20 km length of the Duplin River. We collected surface water samples (~0.20 m) at low- to mid-tide, monthly from April-December 2014. Sediment samples (top 1 cm) were collected at the same time from unvegetated creek bank at 2 locations on the Duplin River and from 4 locations spanning the creek bank-to-upland gradient of the saltmarsh accessible from the Teal Boardwalk. The abundance of ammonia oxidizing Archaea, Marine Group 1 Archaea (Thaumarchaeota), ammonia oxidizing Betaproteobacteria (AOB), Bacteria and Nitrospina, a nitrite oxidizing bacterium, were determined by quantitative PCR (qPCR) of DNA extracted from the samples. This data set contains the abundance estimates from April to December 2014 for sediment and water column samples, with corresponding water quality measurements (temperature, salinity and nitrogenous nutrient concentrations).
Saint Louis River Estuary Water Chemistry, Wisconsin, Minnesota, USA 2012 - 2013
These data pertain to water and sediments collected from the Saint Louis River Estuary (SLRE) and its nearby water sources by Luke Loken and collaborators for his Masters thesis and additional publications. In brief, we sampled SLRE surface waters and sediments for a variety of physical, chemical, and biological attributes. Ten estuary stations were sampled approximately monthly from April 2012 through September 2013. On four of the sampling campaigns, water was collected from an additional 20 sites. Sites were selected to represent a gradient from the Saint Louis River to Lake Superior and included several tributaries that drain directly into the estuary. This design aimed to understand the spatial and temporal mixing pattern of the estuary as it receives water from several rivers, 2 waste water treatment plant, and Lake Superior. We sampled the estuary to assess the magnitude and timing of source water contributions to the estuary and establish a baseline of chemical and physical measurements to aid in future limnological research. Additionally, we performed nitrogen and carbon cycling rate experiments to determine the estuary-wide influence on nitrate, ammonium, and dissolved organic carbon. This included 8 sediment denitrification, 1 nitrification, and 2 breakdown dissolved organic carbon (BDOD) surveys. This work was funded by the Minnesota and Wisconsin Sea Grant and in coordination with the establishment of the Lake Superior National Estuary Research Reserve (LSNERR).
Chloride Concentrations, Conductivity, and Water Temperature Data from Upper Yahara River Watershed Tributaries in Dane County, WI: December 2019 – April 2021
Conductivity and chloride were measured for 2 years in nine tributaries of Lake Mendota and Lake Monona in Dane County, WI. HOBO Conductivity loggers continuously measured absolute conductivity and water temperature every 30 minutes. Breaks in data collection were due to a calibration period or if the loggers were out of the water. Grab samples for chloride concentration occurred weekly or biweekly. Conductivity and water temperature were measured with a field meter at each sampling excursion. This data was needed for a master’s research thesis with the goal of characterizing the spatial distribution and loading of chloride in the Upper Yahara River Watershed.
Annual estimates of the water budget for the Ipswich River watershed, 1931 to 2018
Annual estimates of the water budget for the Ipswich River watershed, 1931 to 2018. The water budget includes precipitation, evapotranspiration, stream flows, water withdrawals, sewer export and public water supply imports.
GRWSE-global river water surface elevation from sentinel-3
<p>This dataset includes time series of Water Surface Elevation (WSE) of large rivers at over 3000 virtual stations. The WSE time series were created using Sentinel-3A and Sentinel-3B altimetry data. </p>
Water quality data (River sediment, Nitrogen and Phosphorus loads) for Africa
<p>Output data on African water quality and scripts for preprint - "One third of African rivers fail to meet the 'good ambient water quality' nutrient targets" at <a href="https://dx.doi.org/10.2139/ssrn.4829742">https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4829742</a> . Please check the readme file for data description. The data includes river flow, sediment load, nitrogen and Phosphorus loads for Africa at daily and yearly time scale. This work is currently under review in Ecological Indicators journal. </p>
Data for manuscript titled 'Impact of urbanization and drought on river water quality, case study of nutrient levels in Cuenca and Giron (Azuay, Ecuador)'
<p>The uploaded zip-file entails the data obtained through four field campaigns performed in the province of Azuay (Ecuador) in the period July 2023 - May 2024, which is used as a basis for the manuscript titled 'Impact of urbanization and drought on river water quality, case study of nutrient levels in Cuenca and Giron (Azuay, Ecuador)' that was submitted to a Special Issue in the journal Water in 2024. The study aimed at illustrating the impact of urbanisation and drought on the abiotic water conditions of the rivers passing through the studied urban areas.</p> <p>The data includes a subfolder with data obtained from an external website (https://generacioncsr.celec.gob.ec/graficasproduccion/) and aligns with the folder structure of the GitHub-repository that contains the analysis scripts (to be added when the manuscript is accepted). The data file only contains the baseline data, while results can be obtained through running the R-scripts in the GitHub-repository. Additional comments on the analyses are also provided in the analysis scripts.</p> <p><strong>DATA COLLECTION</strong></p> <p>Information on the locations was collected prior to the first field campaign (July 2023) and confirmed in the field (and corrected when necessary). The following variables were registered: Date & Time, Coordinates (latitude and longitude, in WGS84 format), Altitude (in meters above mean sea level), Distance (to a fixed location downstream; being the province border), and Category (River or Stream).</p> <p>Information on the physicochemical conditions was collected directly in the field with a <strong>Horiba U-52</strong> multiprobe. The following variables were registered: Temperature, pH, Electrical conductivity (reference at 25 °C), Oxygen level (as concentration), and Turbidity (in NTU).</p> <p>At each site, a bucket was rinsed thrice with prevailing surface water and subsequently filled with a water sample of the top of the water column. The multiprobe was rinsed with this sample water and then submerged in the bucket, followed by continuous stirring (to avoid a decrease of the oxygen levels) until the readings stabilised. After stabilisation, readings were recorded on a separate data sheet prior to being digitalised.</p> <p>Information on the nutrient levels was obtained through the collection of water samples in the field and the subsequent analysis in the laboratory. The following nutrients were selected: ammonium, nitrate, nitrite, and orthophosphate. For the analyses, <strong>Merck test kits</strong> (equivalent to USEPA analyses) were used in combination with a Genesys UV-VIS spectrophotometer (Thermofisher).</p> <p><strong>In the field</strong>, a bucket was rinsed thrice with prevailing surface water and subsequently filled with a water sample of the top of the water column. A polyethylene syringe was rinsed thrice with sample water and subsequently filled prior to being fitted with a 0.45 µm PES filter. About 100 mL of sampled water was filtered and collected in a 250 mL polyethylene bottle that was rinsed with the first 5 mL of filtered water. The bottle was stored in a cooling box and transported to the laboratory.</p> <p><strong>In the laboratory</strong>, the 250 mL bottle was stored at 4 °C until analysis. Within 36 hours, concentrations of ammonium, nitrate, nitrite, and orthophosphate were determined <strong>in triplicate</strong>. More specifically, the following test kits were used to determine said nitrogen and phosphorus concentrations (with quantification range between brackets):</p> <ul> <li>Ammonium: 1.14752.0001 (0.05-3.00 mgN/L)</li> <li>Nitrate: 1.14773.0001 (2-20 mgN/L)</li> <li>Nitrite: 1.14776.0001 (0.02-1.00 mgN/L)</li> <li>Orthophosphate: 1.14848.0001 (0.05-5.00 mgP/L)</li> </ul> <p>Regarding the <strong>spectrophotometric determination</strong>, all analyses were complemented with a blank and a standard with a known concentration of each individual nutrient component. For each nutrient, a specific wavelength was used and the resulting absorbance was converted to the associated nutrient concentration through known factors (similar to the use of calibration curves), after setting the absorbance of the blank as reference absorbance (i.e. a concentration of 0 mg/L). All of the analyses were performed with plastic 1-cm cuvettes during the first campaign, while 5-cm cuvettes were used in the remaining three campaigns due to low nutrient levels (except for nitrate, for which an analysis through 5-cm cuvettes is not supported by the used test kits).</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.