Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
271
datasets available to search
ShareScore release 0.9.0
Dataset results
271 results for “scATAC”
Single-cell ATAC-seq analysis of hESCs undergoing neuronal differentiation exposed to paracetamol [scATAC-seq]
GEO Series GSE220026. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Foxp1 developing neocortex (scATAC-Seq)
GEO Series GSE267670. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell analysis of the epigenomic and transcriptional landscape of innate immunity to seasonal and adjuvanted pandemic influenza vaccination in humans (H5N1_scATAC-seq)
GEO Series GSE165904. Homo sapiens. 96 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Eribulin induces mesenchymal-epithelial transition to curtail metastatic progression by altering the chromatin landscape of breast cancers cells [scATAC-Seq]
GEO Series GSE207595. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScRNA-seq and scATAC-seq analysis of human pluripotent stem cell (hPSC) derived macrophages iMacs
GEO Series GSE234577. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming (scATAC-seq)
GEO Series GSE230657. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CRISPR activation screens identify the SWI-SNF ATPases as suppressors of ferroptosis [NGS3790_scATAC]
GEO Series GSE245243. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Sex differences in DNMT3A-mutant clonal hematopoiesis and the effects of estrogen [scATAC-Seq]
GEO Series GSE272265. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
HyDrop: droplet-based scATAC-seq and scRNA-seq using dissolvable hydrogel beads
GEO Series GSE175684. Homo sapiens; Mus musculus; Drosophila melanogaster. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Prmt5 deficiency inhibits CD4+T cells migration through Klf2-S1pr1 and ameliorates EAE disease (scATAC-seq)
GEO Series GSE195882. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cellular states, clonal dynamics, and evolution in Pearson syndrome revealed via single-cell multi-omics [Invitro_scATAC]
GEO Series GSE173934. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multi-omics analysis identifies progenitors of CD4-CTLs [scATAC-seq invitrodiff]
GEO Series GSE288975. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Coupled single-cell epigenome editing and profiling reveals causal gene regulatory networks [scATAC-seq]
GEO Series GSE116248. Homo sapiens. 288 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrative Single-Cell RNA-Seq and ATAC-Seq Identifies Transcriptional and Epigenetic Blueprint Guiding Osteoclastogenic Trajectory [scATAC-seq]
GEO Series GSE288654. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Temporally-Divergent Regulatory Mechanisms Govern Neuronal Diversification and Maturation in the Neocortex [scATAC-seq]
GEO Series GSE204761. Mus musculus; Callithrix jacchus. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cellular states, clonal dynamics, and evolution in Pearson syndrome revealed via single-cell multi-omics [PBMC_scATAC]
GEO Series GSE173931. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
TRPS1 maintains luminal progenitors in the mammary gland by repressing SRF/MRTF activity [03_scatac_shTRPS1_organoids]
GEO Series GSE243509. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Distinct Gene Regulatory Dynamics Drive Skeletogenic Cell Fate Convergence During Vertebrate Embryogenesis [scATAC]
GEO Series GSE281763. Gallus gallus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
MYOD1L122R induces cancer stem cell pathways to impart chemotherapy and radiation-resistance in aggressive rhabdomyosarcoma [scATAC-seq]
GEO Series GSE274639. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Small intestine and colon tissue-resident memory CD8+ T cells exhibit transcriptional, epigenetic, and functional heterogeneity in concert with differential dependence on Eomesodermin [scATAC-seq]
GEO Series GSE205549. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.