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86
datasets available to search
ShareScore release 0.9.0
Dataset results
86 results for “sequence tagging”
scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells
GEO Series GSE249799. Mus musculus; Homo sapiens. 46 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
mRNA sequence analysis of zebrafish embryos injected with the codon tag reporter library
GEO Series GSE173179. Danio rerio. 12 samples. Type: Other.
Sequences tags expressed in ovules of Arabidopsis thaliana using Massively Parallel Signature Sequencing (MPSS)
GEO Series GSE50020. Arabidopsis thaliana. 2 samples. Type: Expression profiling by MPSS.
Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation [HMST-Seq]
GEO Series GSE41069. Homo sapiens. 12 samples. Type: Methylation profiling by high throughput sequencing.
Chromatin Interaction Analysis by Paired-End Tag Sequencing (ChIA-PET) analysis in TNF-alpha-stimulated human umblical vein endothelial cells (HUVECs)
GEO Series GSE121517. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
mRNA sequence analysis of zebrafish embryos injected with the codon tag reporter library [AnsB]
GEO Series GSE185915. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
Super-enhancer H3K27ac CUT& Tag sequencing of six human gastric cancer tissue samples
GEO Series GSE275349. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis
GEO Series GSE17403. Homo sapiens. 60 samples. Type: Expression profiling by array; Genome variation profiling by genome tiling array; Expression profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of ribo-tag pulled down Transcriptomes in renal proximal tubule epithelial cells from Plasmodium Chabaudi Chabaudi infected Egfp.l10Pepck
GEO Series GSE189579. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations
GEO Series GSE32674. Homo sapiens. 5 samples. Type: Genome variation profiling by high throughput sequencing.
A model system for assessing the ability of tag sequencing to detect genes specific for malignant B-cells
GEO Series GSE40310. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Data from: Modular tagging of amplicons using a single PCR for high-throughput sequencing
High-throughput sequencing (HTS) of PCR amplicons is becoming the method of choice to sequence one or several targeted loci for phylogenetic and DNA barcoding studies. Although the development of HTS has allowed rapid generation of massive amounts of DNA sequence data, preparing amplicons for HTS remains a rate-limiting step. For example, HTS platforms require platform-specific adapter sequences to be present at the 5′ and 3′ end of the DNA fragment to be sequenced. In addition, short multiplex identifier (MID) tags are typically added to allow multiple samples to be pooled in a single HTS run. Existing methods to incorporate HTS adapters and MID tags into PCR amplicons are either inefficient, requiring multiple enzymatic reactions and clean-up steps, or costly when applied to multiple samples or loci (fusion primers). We describe a method to amplify a target locus and add HTS adapters and MID tags via a linker sequence using a single PCR. We demonstrate our approach by generating reference sequence data for two mitochondrial loci (COI and 16S) for a diverse suite of insect taxa. Our approach provides a flexible, cost-effective and efficient method to prepare amplicons for HTS.
Dataset of Expressed Sequence Tags for Arabian Camel
<p>The dataset consists of 23,602 expressed sequence tags (ESTs) from the Arabian camel. This dataset was made available as part of an effort to undertake a comprehensive re-annotation by leveraging the latest genomic databases and advanced bioinformatics tools. Our primary aim is to uncover potentially novel sequences to gain fresh genetic insights and expand our understanding of camel genetics. This research underscores the importance of revisiting genomic data and demonstrates how advancements in science and technology can significantly contribute to the fields of evolutionary biology and genomics. Through this reevaluation, we identified 2,648 potential novel ESTs, thereby enriching the genetic framework of the Arabian camel and offering new perspectives on its evolutionary characteristics.</p>
Next-generation sequencing facilitates quantitative analysis of CON and PMB treated HepG2 cells and CreAlbMYC and CreAlbScarb2F/FMYC mice liver transcriptomes, and CUT&Tag analysis genome-wide maps of
GEO Series GSE207673. Mus musculus; Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Data from: Modular tagging of amplicons using a single PCR for high-throughput sequencing
Open the record for dataset details and reuse information.
Single-cell RNA sequencing of C3(1)-Tag cancer cells during invasion and colony formation.
GEO Series GSE149299. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Splinted Ligation Adapter Tagging, a novel library preparation for whole genome bisulphite sequencing
GEO Series GSE89213. Homo sapiens. 8 samples. Type: Methylation profiling by high throughput sequencing.
Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation [MeDIP_hMeDIP]
GEO Series GSE41070. Homo sapiens. 2 samples. Type: Methylation profiling by high throughput sequencing.
SAS cell line KDM4C-CUT&Tag sequencing
GEO Series GSE273500. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Targeting VRK2 Enhances the Efficacy of Anti-PD-1 Therapy in Hepatocellular Carcinoma by Reducing Direct Phosphorylation and Stability of MYC，CUT-TAG sequencing for MYC in hepatocellular carcinoma cel
GEO Series GSE301942. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.