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108
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ShareScore release 0.9.0
Dataset results
108 results for “spatial gene expression”
Probe-based spatial host-pathogen genes expression to study bacterial pathogenesis and the regulation of bacterial virulence factors in tissue.
GEO Series GSE242471. Mus musculus. 4 samples. Type: Other.
Spatial control of oxygen delivery to 3D cultures alters cancer cell growth and gene expression
GEO Series GSE129111. Homo sapiens. 58 samples. Type: Expression profiling by high throughput sequencing.
Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes [Spatial
GEO Series GSE289170. Mus musculus. 6 samples. Type: Other.
Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs
GEO Series GSE123265. Sus scrofa. 32 samples. Type: Expression profiling by high throughput sequencing.
Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection [gene expression]
GEO Series GSE159787. Homo sapiens; Severe acute respiratory syndrome coronavirus 2. 363 samples. Type: Other; Expression profiling by high throughput sequencing.
Spatial transcriptome of developmental mouse brain reveals temporal dynamics of gene expressions and heterogeneity of the claustrum
GEO Series GSE229508. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control [Spatial Transcriptomics]
GEO Series GSE283433. Mus musculus. 2 samples. Type: Other.
Kidney single-cell transcriptomes predict spatial corticomedullary gene expression and tissue osmolality gradients [Drop-seq]
GEO Series GSE145688. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
Salivary gland transcriptomic analysis in the IL-14α transgenic mouse model of Sjögren’s disease using Visium V1 3' spatial gene expression assay
GEO Series GSE298921. Mus musculus. 2 samples. Type: Other.
Spatial transcriptome gene expression profile in 2 patients with Hashimoto's thyroiditis and 2 patients with papillary thyroid cancer combined with Hashimoto's thyroiditis.
GEO Series GSE230424. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Unique gene expression in Down syndrome mouse model contingent on spatial subregion in excitatory hippocampal neurons during early midlife
GEO Series GSE283699. Mus musculus. 81 samples. Type: Expression profiling by high throughput sequencing.
Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data
GEO Series GSE264331. Homo sapiens. 16 samples. Type: Other.
Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes of local and large-scale chromatin spatial structure
GEO Series GSE76573. Gallus gallus. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatially resolved gene expression of human protate tissue slices treated with steroid hormones for 8 hours
GEO Series GSE159697. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells
GEO Series GSE108561. Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing.
Redistribution of the Lamin B1 genomic binding profile affects spatial rearrangement of heterochromatic domains and gene expression during senescence
GEO Series GSE49341. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA-Seq Analysis of Genes Differentially Expressed across temporal and spatial deposition of wall ingrowths in Arabidopsis Phloem Parenchyma Transfer Cells
GEO Series GSE107778. Arabidopsis thaliana. 18 samples. Type: Expression profiling by high throughput sequencing.
Kidney single-cell transcriptomes predict spatial corticomedullary gene expression and tissue osmolality gradients [single nuclei]
GEO Series GSE145689. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Data and results from Spage2vec: Unsupervised representation of localized spatial gene expression signatures
<p>This repository contains spatial gene expression data for reproducing analysis results of spage2vec manuscript [1].</p> <p>[1] Partel G, Wählby C. Spage2vec: Unsupervised representation of localized spatial gene expression signatures. The FEBS Journal. 2020.</p> <p>Acknowledgement:</p> <p>We thank Xiaoyan Qian, Simone Codeluppi, Jeffrey Moffitt, Kok Hao Chen, Alistair N. Boettiger and Dhananjay Bambah-Mukku for generating and sharing in situ sequencing [2], osmFISH [3] and MERFISH [4-5] datasets. And Jeongbin Park, Wonyl Choi for uploading osmFISH [3] and MERFISH [4] data to public repository.</p> <p> </p> <p>[2] Qian, Xiaoyan, et al. "Probabilistic cell typing enables fine mapping of closely related cell types in situ." Nature methods 17.1 (2020): 101-106.</p> <p>[3] Codeluppi, Simone, et al. "Spatial organization of the somatosensory cortex revealed by osmFISH." Nature methods 15.11 (2018): 932-935.</p> <p>[4] Moffitt, Jeffrey R., et al. "Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region." Science 362.6416 (2018): eaau5324.</p> <p>[5] Chen, Kok Hao, et al. "Spatially resolved, highly multiplexed RNA profiling in single cells." <em>Science</em> 348.6233 (2015): aaa6090.</p>
Spatial gene expression-based, non-small cell lung carcinoma patients with paired brain metastases
GEO Series GSE200563. Homo sapiens. 120 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.