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102
datasets available to search
ShareScore release 0.9.0
Dataset results
102 results for “stationary phase”
Transcriptome of E. coli during Long-Term Stationary Phase
GEO Series GSE152619. Escherichia coli. 18 samples. Type: Expression profiling by high throughput sequencing.
Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase
GEO Series GSE195579. Bacillus subtilis. 14 samples. Type: Expression profiling by high throughput sequencing.
The small transcriptome of Escherichia coli in exponential and stationary phase
GEO Series GSE161907. Escherichia coli str. K-12 substr. MG1655. 16 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Effect of myricetin treatment on Roseovarius tolerans EL-164 during exponential and early stationary phase growth.
GEO Series GSE279554. Roseovarius tolerans. 12 samples. Type: Expression profiling by high throughput sequencing.
Data from: Pyoverdin cheats fail to invade bacterial populations in stationary phase
Microbes engage in cooperative behaviours by producing and secreting public goods, the benefits of which are shared among cells, and are therefore susceptible to exploitation by nonproducing cheats. In nature, bacteria are not typically colonizing sterile, rich environments in contrast to laboratory experiments, which involve inoculating sterile culture with few bacterial cells that then race to fill the available niche. Here, we study the potential implications of this difference, using the production of pyoverdin, an iron-scavenging siderophore that acts as a public good in the bacteria Pseudomonas aeruginosa. We show that (1) nonproducers are able to invade cultures of producers when added at the start of growth or during early exponential growth phase, but not during late exponential or stationary phase; (2) the producer strain does not produce pyoverdin in the late exponential and stationary phases and so is not paying the cost of cooperating during those phases. These results suggest that whether a nonproducing mutant can invade will depend upon when the mutation arises, as well as the population structure, and raise a potential difficulty with the use of antimicrobial treatment strategies that propose to exploit the invasive abilities of cheats.
Defining the impact of exoribonucleases in the shift between exponential and stationary phases
GEO Series GSE117635. Escherichia coli K-12. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis of S. maltophilia in the exponential and stationary phases and after a treatment with quorum sensing autoinducers.
GEO Series GSE206442. Stenotrophomonas maltophilia K279a. 14 samples. Type: Expression profiling by high throughput sequencing.
Data from: Pyoverdin cheats fail to invade bacterial populations in stationary phase
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Comparative Transcriptomic Analysis of Perfluoroalkyl Substances-Induced Responses of Exponential and Stationary Phase Escherichia coli
GEO Series GSE288896. Escherichia coli str. K-12 substr. MG1655. 45 samples. Type: Expression profiling by high throughput sequencing.
Gene transfer agents promote survival and DNA repair during stationary phase for Caulobacter crescentus (RNA-Seq)
GEO Series GSE184480. Caulobacter vibrioides. 6 samples. Type: Expression profiling by high throughput sequencing.
Metabolic reprogramming with the induction of toxin production of Clostridioides difficile during the stationary phase
GEO Series GSE115054. Clostridioides difficile 630. 16 samples. Type: Expression profiling by array.
Expression profiling of E. coli rpoS knock-out strain during stationary phase in M9 minimal media with 0.2% glucose
GEO Series GSE46543. Escherichia coli str. K-12 substr. MG1655. 3 samples. Type: Expression profiling by genome tiling array.
Recovery from stationary phase in 10 mM Na-P (pH 7.5) + 0.2 % glucose
GEO Series GSE4371. Escherichia coli. 7 samples. Type: Expression profiling by array.
Bacillus subtilis WN715 vs WN716 expression in early stationary phase.
GEO Series GSE24018. Bacillus subtilis. 2 samples. Type: Expression profiling by array.
Transcription differences of Micrococcus luteus at late-exponential and stationary phase
GEO Series GSE38040. Micrococcus luteus NCTC 2665. 6 samples. Type: Expression profiling by array.
Effect of Tup1, Xbp1, Isw2, and Sds3 on H3K23ac in stationary phase.
GEO Series GSE210928. Saccharomyces cerevisiae. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Pervasive promoter-proximal regulation in archaea: RNA-seq of cells during stationary phase
GEO Series GSE156286. Saccharolobus solfataricus. 3 samples. Type: Expression profiling by high throughput sequencing.
Small RNA sequencing of Pyrobaculum species in exponential and stationary phases
GEO Series GSE106228. Pyrobaculum arsenaticum; Pyrobaculum oguniense; Pyrobaculum islandicum; Pyrobaculum aerophilum; Pyrobaculum calidifontis. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Stationary phase - ypl230w mutant and wildtype
GEO Series GSE408. Saccharomyces cerevisiae. 12 samples. Type: Expression profiling by array.
Listeria monocytogenes Cold Regulon in Log- and Stationary-Phase cells
GEO Series GSE7465. Listeria monocytogenes; Listeria innocua. 2 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.