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opencc-by-4.0Jan 2021View details →

On the Understandability of Language Constructs to Structure the State and Behavior in Abstract State Machine Specifications: A Controlled Experiment

Data-Set and Artifacts: Documents, Forms, and R Scripts for Reproducibility of the Empirical Study

opencc-zeroDec 2018View details →

Data from: Canopy leaf area index at its higher end: dissection of structural controls from leaf to canopy scales in bryophytes

There is evidence that mosses with miniature foliage elements have extremely large leaf area indices (LAI), but it is unclear what canopy traits are responsible for these high LAI values in architecturally divergent mosses, and how the inherent tradeoffs limiting maximum LAI in vascular plants can be overcome in mosses. To determine the quantitative significance of different traits in determining LAI, we developed a method to dissect LAI into underlying functionally dependent constituent traits at leaf, shoot and canopy scales. The suites of structural traits were studied altogether for 43 moss canopies from 11 species with contrasting light and water requirements along gap-understory gradients to obtain as large a range of variation in moss architecture as possible and evaluate the differentiation in moss LAI in relation to species ecology. Extensive variation in moss structural traits, 11- (shoot length) to 77-fold (shoot number per area, NS), was observed at all structural scales from leaf to canopy. However, LAI only varied 9-fold, as the result of two key tradeoffs, leaf size vs. number tradeoff and shoot leaf area vs. shoot density tradeoff. Due to these negative relationships, and greater variability in NS, LAI primarily scaled with NS. and LAI increased with site light availability, and LAI was greater in open and dry habitat species. The current study highlights a huge structural diversity among moss canopies, but indicates that canopies converge to a much narrower range of LAI due to trait tradeoffs such that, counterintuitively, minute leaf size and densely leafed stems are not necessarily responsible for high LAI in mosses.

Data from: Palaeobiogeographical structuration of Smithian (Early Triassic) ammonoid faunas within the western USA basin and its controlling parameters

We present the first quantitative palaeobiogeographical analysis in terms of distribution and abundance of Early Triassic ammonoids from the western USA basin during the Smithian, c. 1 myr after the Permian–Triassic boundary mass extinction. The faunal dataset consists of a taxonomically homogenized compilation of spatial and temporal occurrences and abundances from 27 sections distributed within the western USA basin. Two complementary multivariate techniques were applied to identify the main biogeographical structuring recorded in the analysed presence/absence data: additive cluster analysis using the neighbor‐joining algorithm (NJ) and non‐metric multidimensional scaling (NMDS). Regarding abundance data, a taxonomic diversity (sensu evenness) analysis was coupled with graphical comparisons of relative abundances of selected taxa. The identified relationships indicate that middle Smithian ammonoids of the western USA basin were geographically organized in terms of both distribution and abundance, with the biogeographical distinction of a southern and a northern cluster. This N–S structuring in the distribution and abundance of middle Smithian ammonoids is notably paralleled by the relative amount of siliciclastics, which suggests that clastic load of the water column was a major controlling factor. In marked contrast with the middle Smithian, the studied late Smithian ammonoid assemblages do not show any significant differences, whatever the depositional environment. This abrupt biogeographical homogenization, independent from intrabasinal facies heterogeneity, indicates a switch from regional to global drivers, associated with the well‐known late Smithian global extinction and remarkable cosmopolitan ammonoid distributions during that time.

Data from: Plant controls on Late Quaternary whole ecosystem structure and function

Plants and animals influence biomass production and nutrient cycling in terrestrial ecosystems; however their relative importance remains unclear. We assessed the extent to which mega-herbivore species controlled plant community composition and nutrient cycling, relative to other factors during and after the Late Quaternary extinction event in Britain and Ireland, when two-thirds of the region's mega-herbivore species went extinct. Warmer temperatures, plant-soil and plant-plant interactions, and reduced burning contributed to the expansion of woody plants and declining nitrogen availability in our five study ecosystems. Shrub biomass in particular was consistently one of the strongest predictors of ecosystem change, equaling or exceeding the effects of other biotic and abiotic factors. In contrast, there was relatively little evidence for mega-herbivore control on plant community composition and nitrogen availability. The ability of plants to determine the fate of terrestrial ecosystems during periods of global environmental change may therefore be greater than previously thought.

opencc-zeroDec 2012View details →

Data from: Do differences in food web structure between organic and conventional farms affect the ecosystem service of pest control?

While many studies have demonstrated that organic farms support greater levels of biodiversity, it is not known whether this translates into better provision of ecosystem services. Here we use a food-web approach to analyse the community structure and function at the whole-farm scale. Quantitative food webs from 10 replicate pairs of organic and conventional farms showed that organic farms have significantly more species at three trophic levels (plant, herbivore and parasitoid) and significantly different network structure. Herbivores on organic farms were attacked by more parasitoid species on organic farms than on conventional farms. However, differences in network structure did not translate into differences in robustness to simulated species loss and we found no difference in percentage parasitism (natural pest control) across a variety of host species. Furthermore, a manipulative field experiment demonstrated that the higher species richness of parasitoids on the organic farms did not increase mortality of a novel herbivore used to bioassay ecosystem service. The explanation for these differences is likely to include inherent differences in management strategies and landscape structure between the two farming systems.

opencc-zeroDec 2015View details →

Data from: Controlled fluorescence in a beetle's photonic structure and its sensitivity to environmentally induced changes

The scales covering the elytra of the male Hoplia coerulea beetle contain fluorophores embedded within a porous photonic structure. The photonic structure controls both insect colour (reflected light) and fluorescence emission. Herein, the effects of water-induced changes on the fluorescence emission from the beetle were investigated. The fluorescence emission peak wavelength was observed to blue-shift on water immersion of the elytra whereas its reflectance peak wavelength was observed to red-shift. Time-resolved fluorescence measurements, together with optical simulations, confirmed that the radiative emission is controlled by a naturally engineered photonic bandgap while the elytra are in the dry state, whereas non-radiative relaxation pathways dominate the emission response of wet elytra.

Data from: Genetic structure of introduced American mink (Neovison vison) in Patagonia: colonisation insights and implications for control and management strategies

Context: Biological invasions have caused dramatic changes in native biodiversity and ecosystem function. Studies of genetic variation and evolutionary changes are useful for understanding population dynamics during biological invasions, and shed light on management, prevention and restoration strategies. Aims: This study aimed to investigate the structure and genetic variability of American mink (Neovison vison), an invasive species in southern South America, introduced for fur farming in the 1930s. Methods: Samples from 153 mink were obtained from 12 locations in southern Chile to sequence the mitochondrial DNA (mtDNA) control region and to genotype 11 polymorphic microsatellite loci. Key results: The highest mtDNA diversity was detected in Puerto Cisnes, suggesting multiple introductions and/or the most probable area where mink was first introduced. The latter is also supported by microsatellite data, because a high percentage of individuals from different locations were assigned to this location. All other locations showed low or no mtDNA diversity, possibly due to founder effect. The results also indicate marked population structure, with three genetic clusters coincident with the main historical introduction points, with low dispersal among them. Conclusions: The results suggest that control strategies for American mink in southern Chile should be concentrated on these three genetically differentiated management units, and particularly on source populations and locations with low effective population size and restricted connectivity. Implications: Genetic approaches have been used for the management of numerous alien species worldwide. Recommendations delivered here for American mink control could also be implemented in other regions and for other invasive species with similar genetic diversity distribution and connectivity.

opencc-zeroJan 2020View details →

Data from: Mesocarnivore community structure under predator control: unintended patterns in a conservation context

Across the Mediterranean, conservation programmes often operate concomitantly with hunting interests within game-lands. Carnivore guilds lie at the interface between contrasting management goals, being simultaneously fundamental components of ecosystems and targets of predator control to reduce predation on game species. Here, we evaluate the composition and spatial structure of a mesocarnivore community in a protected area of Southeast Portugal, with high economic investment in conservation and significant hunting activity. Between June and August 2015, we deployed 77 camera-traps across a ~80 km2 area. We report on interspecific disparities in mesocarnivore occupancy and associated environmental determinants. Contrasting occupancy states suggest an unbalanced community, biased towards the widespread occurrence of the red fox Vulpes vulpes ("ψ" ̂ = 0.92±0.04) compared to other species (stone marten Martes foina, European badger Meles meles, Egyptian mongoose Herpestes ichneumon, common genet Genetta genetta, and Eurasian otter Lutra lutra) exhibiting spatially-restricted occupancy patterns ("ψ" ̂ / naïve occupancy < 0.35). The feral cat Felis silvestris catus was the exception ("ψ" ̂ = 0.48±0.11) and, together with the stone marten, exhibited a positive association with human settlements. These findings are consistent with theoretical predictions on how mesocarnivore communities are shaped by the effects of non-selective predator control, paradoxically favouring species with higher population growth rates and dispersal abilities, such as the red fox. Our results reinforce the need to understand the role of predator control as a community structuring agent with potential unintended effects, while exposing issues hindering such attempts, namely non-selective illegal killing or biased/concealed information on legal control measures.

opencc-zeroDec 2014View details →

Data from: Resolving patterns of population genetic and phylogeographic structure to inform control and eradication initiatives for brown rats Rattus norvegicus on South Georgia

The control and eradication of invasive species is a common management strategy to protect or restore native biodiversity. On South Georgia in the Southern Ocean, the brown rat Rattus norvegicus was brought onto the island with the onset of whaling and sealing activity in the 1800s and has had a significant detrimental impact on key bird species of conservation concern. Efforts to eradicate rats from South Georgia using poisoned bait are ongoing. Despite the South Georgia rat eradication programme being the geographically largest and most ambitious eradication initiative to date, its success is facilitated by the potential that rat populations are effectively isolated by glacial barriers. This allows for localized eradication effort at manageable scales, leading to sequential eradication of individual populations with minimal risk of incursion from neighbouring areas. Here, we use the levels of population genetic divergence estimated from 299 single nucleotide polymorphism (SNP) loci and DNA sequence variation across 993 base pairs of the mitochondrial DNA cytochrome B locus to examine whether rat populations from nine glacially isolated areas on South Georgia are genetically distinct and so can be treated as independent eradication units. Bayesian clustering of individuals based on SNP similarity identified seven different genetic groups, which were confirmed using analyses based on pairwise genetic distance estimates and ordination of individuals using principal coordinate analysis. From a management perspective, these seven groups represent individual targets in baiting operations. Two mtDNA haplotypes were resolved across South Georgia, with a distinct geographical separation between the north-western and south-eastern populations. Approximate Bayesian computation (ABC) was used to identify that this divergence was a consequence of two separate historical colonization events. Synthesis and applications. We illustrate that molecular markers are a valuable tool in species management and pest eradication given that the spatial distribution of genetic diversity can: (i) identify demographically and genetically independent populations on which local eradication effort can be focussed, (ii) distinguish between incomplete eradication and immigration in situations where individuals remain after eradication has been attempted and (iii) identify the source of migrants when dispersal occurs over large spatial scales.

opencc-by-4.0Dec 2023View details →

Controlling propagation velocity in Al/Ni reactive multilayer systems by periodic 2D surface structuring

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opencc-zeroApr 2022View details →

Water availability rather than temperature control soil fauna community structure and prey-predator interactions

The ongoing climate change may strongly impact soil biodiversity with cascading effects on the processes they drive. Thus, it is of prime interest to improve our knowledge about responses by soil organisms such as collembolans to expected shifts in environmental conditions by considering communities comprising both detritivores and predators. The aim of the present study was to evaluate how simulated climate change and predation under laboratory conditions alter a collembolan community. To infer the impact of climate change, we applied a decreased level of soil moisture (60% vs. 30% soil water holding capacity) and an increasing air temperature (15 °C vs. 25 °C) to a collembolan community constituted by four species (Folsomia candida, Protaphorura fimata, Proisotoma minuta and Mesaphorura macrochaeta) exhibiting distinct functional traits, e.g. body size and furca presence, in presence or absence of a predatory gamasid Acari (Stratiolaelaps scimitus) during two months in a microcosm experiment. We observed that decreasing soil moisture altered the collembolan community with species-specific responses. Interaction between soil moisture, temperature and predation indicates that low soil moisture reduced total collembolan abundance especially i) by suppressing the positive effect of increasing temperature and ii) by increasing the predatory control on collembolan abundance. These results highlight that soil moisture is the major driver of Collembola community and by consequence, a shift in climatic parameters with the ongoing climate change should strongly modify the Collembola community structure and the predator-prey interaction. Our findings are highly important since a strengthening of predation impact on Collembola prey could have major consequences on the whole soil food web being able to lead to a slowdown of key ecosystem processes they drive (e.g., litter decomposition and nutrient recycling). Finally, our study promotes the need to study more complex systems considering distinct soil-dwelling species, their functional traits and their trophic interactions to better predict the ecosystem responses to the ongoing climate change.

opencc-zeroOct 2022View details →

Structure vs. chemistry: Alternate mechanisms for controlling leaf microbiomes

Background The analysis of phyllosphere microbiomes traditionally relied on DNA extracted from whole leaves. To investigate the microbial communities on the adaxial (upper) and abaxial (lower) leaf surfaces, swabs were collected from both surfaces of two garden plants, Rhapis excelsa and Cordyline fruticosa. Results The abaxial surface of Rhapis excelsa and Cordyline fruticosa had fewer bacteria in contrast to their adaxial counterpart. This observation was consistent between noon and midnight and across five different locations. Co-occurrence network analysis further showed that bacteria are found almost exclusively on the adaxial surface while only a small group of leaf blotch fungi survive on the abaxial surface. There are higher densities of stomata on the abaxial surface and these openings are vulnerable ports of entry into the plant host. While one might argue about the settling of dust particles and microorganisms on the adaxial surface, we detected differences in reactive chemical activities and microstructures between the adaxial and abaxial surfaces. Our results further suggest that both plant species deploy different defence strategies to deter invading pathogens on the abaxial surface. Conclusions We hypothesize that chemical and mechanical defence strategies evolved independently for harnessing and controlling phyllosphere microbiomes. Our findings have also advanced our understanding that the abaxial leaf surface is distinct from the adaxial surface and that the reduced microbial diversity is likely a consequence of plant-microbe interactions.

opencc-by-sa-4.0Nov 2017View details →

Structure, function, and control of the musculoskeletal network

Supplementary data for: Structure, function, and control of the musculoskeletal network Table S8: The assigned homunculus categories and data driven community assignments of muscles. Table S9: The hypergraph of muscles and bones from the Hosford muscle tables used in the main text. Table S10: The hypergraph of muscles and bones from Grant's atlas used in the supplementary text.

Data from: Genetic diversity and population structure of the tsetse fly Glossina fuscipes fuscipes (Diptera: Glossinidae) in Northern Uganda: implications for vector control

Uganda is the only country where the chronic and acute forms of human African Trypanosomiasis (HAT) or sleeping sickness both occur and are separated by < 100 km in areas north of Lake Kyoga. In Uganda, Glossina fuscipes fuscipes is the main vector of the Trypanosoma parasites responsible for these diseases as well for the animal African Trypanosomiasis (AAT), or Nagana. We used highly polymorphic microsatellite loci and a mitochondrial DNA (mtDNA) marker to provide fine scale spatial resolution of genetic structure of G. f. fuscipes from 42 sampling sites from the northern region of Uganda where a merger of the two disease belts is feared. Based on microsatellite analyses, we found that G. f. fuscipes in northern Uganda are structured into three distinct genetic clusters with varying degrees of interconnectivity among them. Based on genetic assignment and spatial location, we grouped the sampling sites into four genetic units corresponding to northwestern Uganda in the Albert Nile drainage, northeastern Uganda in the Lake Kyoga drainage, western Uganda in the Victoria Nile drainage, and a transition zone between the two northern genetic clusters characterized by high level of genetic admixture. An analysis using HYBRIDLAB supported a hybrid swarm model as most consistent with tsetse genotypes in these admixed samples. Results of mtDNA analyses revealed the presence of 30 haplotypes representing three main haplogroups, whose location broadly overlaps with the microsatellite defined clusters. Migration analyses based on microsatellites point to moderate migration among the northern units located in the Albert Nile, Achwa River, Okole River, and Lake Kyoga drainages, but not between the northern units and the Victoria Nile drainage in the west. Effective population size estimates were variable with low to moderate sizes in most populations and with evidence of recent population bottlenecks, especially in the northeast unit of the Lake Kyoga drainage. Our microsatellite and mtDNA based analyses indicate that G. f. fuscipes movement along the Achwa and Okole rivers may facilitate northwest expansion of the Rhodesiense disease belt in Uganda. We identified tsetse migration corridors and recommend a rolling carpet approach from south of Lake Kyoga northward to minimize disease dispersal and prevent vector re-colonization. Additionally, our findings highlight the need for continuing tsetse monitoring efforts during and after control.

opencc-zeroDec 2020View details →

Species diversity and food web structure jointly shape natural biological control in agricultural landscapes

Land-use change and agricultural intensification concurrently impact natural enemy (e.g., parasitoid) communities and their associated ecosystem services (ESs), i.e., biological pest control. However, the extent to which (on-farm) parasitoid diversity and food webs mediate landscape-level influences on biological control remains poorly understood. Here, drawing upon a 3-year study of quantitative parasitoid-hyperparasitoid trophic networks from 25 different agro-landscapes, we assess the cascading effects of landscape composition, species diversity and trophic network structure on ecosystem functionality (i.e., parasitism, hyperparasitism). Path analysis further reveals causality leading to the biological control of a resident crop pest, i.e., Aphis gossypii. Functionality is dictated by (hyper)parasitoid diversity, with its effects modulated by food web generality and vulnerability. Non-crop habitat cover directly benefits biological control, whereas secondary crop cover indirectly lowers hyperparasitism. Our work underscores a need to simultaneously account for on-farm biodiversity and trophic interactions when investigating ESs within dynamic agro-landscapes.

opencc-zeroSep 2021View details →

Evaluating the educational effectiveness of a structured, simulator-assisted, peer-led training on cardiovascular physical examination in third-year medical students: A randomized, controlled trial

Background: Previous research suggests that cardiac examination skills in undergraduate medical students frequently need improvement. There are different ways to enhance physical examination (PE) skills such as simulator-based training or peer-assisted learning (PAL). Aim: The aim of this study was to evaluate the effectiveness of a structured, simulator-assisted, peer-led training on cardiovascular PE. Methods: Participants were third-year medical students at Leipzig University Faculty of Medicine. Students were randomly assigned to an intervention group (IG) and a control group (CG). In addition to standard curricular training, IG received a peer-led, simulator-based training in cardiac PE. Participant performance in cardiac PE was assessed using a standardized checklist with a maximum of 25 points. Primary outcome was assessed via checklist point distribution. Results: 89 students were randomised to either CG (n = 43) or IG (n = 46) with 70 completing the study. Overall, IG students performed significantly better than CG students did (max. points: 25, IG M ± SD in IG was 17 ± 3, in CG 12 ± 4, p < .0001). Simple mistakes such as not using the stethoscope correctly were more frequent in CG students. Prior experience did not lead to a significant difference in performance. Conclusions: Structured, peer-led and simulator-assisted teaching sessions improve cardiac PE skills in this setting compared to control students that did not receive this training.

opencc-by-4.0Nov 2024View details →

Pre-existing Structures and Stress Variations Jointly Control the Induced Seismicity in Enhanced Geothermal System of Gonghe Basin, China

This is the dataset available for the article titled "Pre-existing Structures and Stress Variations Jointly Control the Induced Seismicity in Enhanced Geothermal System of Gonghe Basin, China", including phase information, earthquake catalog, waveforms of earthquakes and resolved focal mechanisms, 1D velocity model.

opencc-by-4.0Nov 2022View details →

Structural control within flawed rock specimens under external loading as visualized through repeating nucleation on multiple sites by acoustic emission (AE) [DATA]

Data for article: Structural control within flawed rock specimens under external loading as visualized through repeating nucleation on multiple sites by acoustic emission (AE).

opencc-zeroJan 2023View details →

You eat what you find – local patterns in vegetation structure control diets of African fungus-growing termites

Fungus-growing termites and their symbiotic Termitomyces fungi are critically important carbon and nutrient recyclers in arid and semiarid environments of sub-Saharan Africa. A major proportion of plant litter produced in these ecosystems is decomposed within nest chambers of termite mounds, where temperature and humidity are kept optimal for the fungal symbionts. While fungus-growing termites are generally believed to exploit a wide range of different plant substrates, the actual diets of most species remain elusive. We studied dietary niches of two Macrotermes species across the semiarid savanna landscape in the Tsavo Ecosystem, southern Kenya, based on carbon (C) and nitrogen (N) stable isotopes in Termitomyces fungus combs. We applied Bayesian mixing models to determine the proportion of grass and woody plant matter in the combs, these being the two major food sources available for Macrotermes species in the region. Our results showed that both termite species, and colonies cultivating different Termitomyces fungi, occupied broad and largely overlapping isotopic niches, indicating no dietary specialization. Including laser scanning derived vegetation cover estimates to the dietary mixing model revealed that the proportion of woody plant matter in fungus combs increased with increasing woody plant cover in the nest surroundings. Nitrogen content of fungus combs was positively correlated with woody plant cover around the mounds and negatively correlated with the proportion of grass matter in the comb. Considering the high N demand of large Macrotermes colonies, woody plant matter seems to thus represent a more profitable food source than grass. As grass is also utilized by grazing mammals, and the availability of grass matter typically fluctuates over the year, mixed woodland-grasslands and bushlands seem to represent more favorable habitats for large Macrotermes colonies than open grasslands.