Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
63
datasets available to search
ShareScore release 0.9.0
Dataset results
63 results for “supercoiling”
Cohesin supercoils DNA during loop extrusion
GEO Series GSE292596. Homo sapiens. 24 samples. Type: Other.
An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene [RNA-Seq]
GEO Series GSE77748. Streptococcus pneumoniae R6. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide mapping of DNA supercoils, single-stranded DNA, and Z DNA in C. elegans using new high-throughput methods reveals the delineation of DNA structure by DNA sequence
GEO Series GSE153373. Caenorhabditis elegans. 27 samples. Type: Other.
Negative supercoil senses temperature to modulate meiotic crossovers and chromosomes
GEO Series GSE246901. Saccharomyces cerevisiae. 56 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Type II topoisomerases shape multi-scale 3D chromatin folding in regions of positive supercoils (HiC).
GEO Series GSE255731. Homo sapiens. 12 samples. Type: Other.
Transcription-mediated supercoiling regulates genome folding and loop formation [ChIP-Seq]
GEO Series GSE169474. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide mapping of DNA supercoils, single-stranded DNA, and Z DNA in C. elegans using new high-throughput methods reveals the delineation of DNA structure by DNA sequence (BP-Seq)
GEO Series GSE153371. Caenorhabditis elegans. 20 samples. Type: Other.
Type II topoisomerases shape multi-scale 3D chromatin folding in regions of positive supercoils (microC).
GEO Series GSE255736. Homo sapiens. 16 samples. Type: Other.
DNA supercoiling impacts alternative transcription start site selection in yeast
GEO Series GSE292782. Saccharomyces cerevisiae. 12 samples. Type: Other.
Altering gene expression by aminocoumarin (novobiocin) treatment: Role of DNA supercoiling in Staphylococcus aureus
GEO Series GSE50157. Staphylococcus aureus. 6 samples. Type: Expression profiling by array.
Transcription forms and remodels supercoiling domains unfolding large scale chromatin structures [NimbleGen ChIP-chip]
GEO Series GSE43448. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by genome tiling array.
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [ecChIP]
GEO Series GSE152880. Escherichia coli str. K-12 substr. MG1655. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils [Hi-C]
GEO Series GSE235558. Saccharomyces cerevisiae. 12 samples. Type: Other.
Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils [ChIP-seq]
GEO Series GSE235557. Saccharomyces cerevisiae. 61 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Differential roles of positive and negative supercoiling in organizing the E. coli genome
GEO Series GSE214856. Escherichia coli str. K-12 substr. MG1655. 2 samples. Type: Other.
DNA supercoiling differences in bacteria result from disparate DNA gyrase activation by polyamines
GEO Series GSE150757. Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S. 4 samples. Type: Expression profiling by high throughput sequencing.
Oscillations in supercoiling drive circadian gene expression in cyanobacteria
GEO Series GSE18902. Synechococcus elongatus PCC 7942 = FACHB-805. 23 samples. Type: Expression profiling by array.
Genome-wide mapping of DNA supercoils, single-stranded DNA, and Z DNA in C. elegans using new high-throughput methods reveals the delineation of DNA structure by DNA sequence (SS-Seq)
GEO Series GSE153372. Caenorhabditis elegans. 7 samples. Type: Other.
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [RNA-seq]
GEO Series GSE152879. Escherichia coli str. K-12 substr. MG1655. 2 samples. Type: Expression profiling by high throughput sequencing.
Transcription-mediated supercoiling regulates genome folding and loop formation
GEO Series GSE169492. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.