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54 results for “three-spined sticklebacks”
Supplementary material 2 from: Dahms C, Roch S, Elmer KR, Ros A, Brinker A, Jacobs A (2024) Intra-lake origin and rapid expansion of invasive pelagic three-spined stickleback in Lake Constance. NeoBiota 92: 259-280. https://doi.org/10.3897/neobiota.92.117430
Sample information
Supplementary material 1 from: Dahms C, Roch S, Elmer KR, Ros A, Brinker A, Jacobs A (2024) Intra-lake origin and rapid expansion of invasive pelagic three-spined stickleback in Lake Constance. NeoBiota 92: 259-280. https://doi.org/10.3897/neobiota.92.117430
Supplementary methods and results
Supplementary material 1 from: Gugele SM, Baer J, Spießl C, Yohannes E, Blumenshine S, Roberts BJ, Mota-Ferreira MR, Brinker A (2023) Stable isotope values and trophic analysis of invasive three-spined stickleback in Upper Lake Constance points to significant piscivory. NeoBiota 87: 73-102. https://doi.org/10.3897/neobiota.87.100355
Supplementary information
Data from: Variation in sexual brain size dimorphism over the breeding cycle in the three-spined stickleback
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Data from: High degree of genetic differentiation in marine three-spined sticklebacks (Gasterosteus aculeatus)
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Data from: Local adaptation to salinity in the three-spined stickleback?
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Data from: A universal and reliable assay for molecular sex identification of three-spined sticklebacks (Gasterosteus aculeatus)
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Estimating uncertainty in divergence times among three-spined stickleback clades using the multispecies coalescent
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Data from: Diversity in reproductive seasonality in the three-spined stickleback, Gasterosteus aculeatus
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Data from: Temporal stability of genetic variability and differentiation in the three-spined stickleback (Gasterosteus aculeatus)
Temporal variation in allele frequencies, whether caused by deterministic or stochastic forces, can inform us about interesting demographic and evolutionary phenomena occurring in wild populations. In spite of the continued surge of interest in the genetics of three-spined stickleback (Gasterosteus aculeatus) populations, little attention has been paid towards the temporal stability of allele frequency distributions, and whether there are consistent differences in effective size (Ne) of local populations. We investigated temporal stability of genetic variability and differentiation in 15 microsatellite loci within and among eight collection sites of varying habitat type, surveyed twice over a six-year time period. In addition, Nes were estimated with the expectation that they would be lowest in isolated ponds, intermediate in larger lakes and largest in open marine sites. In spite of the marked differences in genetic variability and differentiation among the study sites, the temporal differences in allele frequencies, as well as measures of genetic diversity and differentiation, were negligible. Accordingly, the Ne estimates were temporally stable, but tended to be lower in ponds than in lake or marine habitats. Hence, we conclude that allele frequencies in putatively neutral markers in three-spined sticklebacks seem to be temporally stable – at least over periods of few generations – across a wide range of habitat types differing markedly in levels of genetic variability, effective population size and gene flow.
Data from: Temporal stability of genetic variability and differentiation in the three-spined stickleback (Gasterosteus aculeatus)
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Marine and freshwater three-spined stickleback (Gasterosteus aculeatus) gene expression differences
GEO Series GSE34783. Gasterosteus aculeatus. 68 samples. Type: Expression profiling by array.
Tapeworm infection affects sleep behavior in three-spined stickleback
GEO Series GSE269460. Gasterosteus aculeatus. 24 samples. Type: Expression profiling by high throughput sequencing.
Single nucleus RNA-sequencing of brain tissue from adult and juvenile three-spined stickleback
GEO Series GSE298917. Gasterosteus aculeatus. 2 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.