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348 results for “tree diversity”
Data from: Tree diversity increases carbon stocks and fluxes above but not belowground in a tropical forest experiment
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Data from: Impact of human foraging on tree diversity, composition and abundance in a tropical rainforest
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Functional genomics and co-occurrence in a diverse tropical tree genus: The roles of drought and defense related genes
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Data from: Functional diversity enhances, but exploitative traits reduce tree mixture effects on microbial biomass
1. Soil microorganisms play key roles in terrestrial biodiversity and ecosystem functions. Despite recent progress in elucidating the association between plant diversity and soil microorganisms, it remains unclear whether the functional properties of plant mixtures might alter this association. 2. We examined whether the effects of tree species mixtures on soil microbial biomass were impacted by the functional diversity (FD) and community-weighted-mean (CWM) of tree mixtures, by conducting a global meta-analysis involving 123 paired observations of tree mixtures and the corresponding monocultures from 38 studies in forests. 3. We found that the tree mixture effect on microbial biomass increased with the FD of specific leaf area (SLA), leaf N and P content, as well as the FD based on all of these traits plus leaf dry matter content. Meanwhile, the responses of microbial biomass to tree mixtures decreased with the CWM of SLA, leaf N, and P content. The effects of FD and CWM remained consistent, despite variable tree species richness, stand age and climatic factors. 4. Our results provide a new insight that the functional properties of plants may alter the magnitude of the association between plant diversity and soil microorganisms.
Data from: A tale of scale: plot but not neighbourhood tree diversity increases leaf litter ant diversity
1. Diversity of producers (e.g. plants) usually increases the diversity of associated organisms, but the scale (i.e. the spatial area of plant diversity considered) at which plant diversity acts on other taxa has rarely been studied. Most evidence for cross-taxon diversity relations come from aboveground consumers that directly interact with plants. 2. Experimental tests of plant diversity effects on elusive organisms inhabiting the leaf litter layer, which are important for nutrient cycling and decomposition, are rare. 3. Using a large tree diversity experiment, we tested whether tree diversity at the larger plot (i.e. community) or the smaller neighbourhood scale relates to the abundance, species richness, functional, and phylogenetic diversity of leaf litter ants, which are dominant organisms in brown food webs. 4. Contrary to our expectations of scale-independent positive tree diversity effects, ant diversity increased only with plot but not neighbourhood tree diversity. While the exact causal mechanisms are unclear, nest relocation or small-scale competition among ants may explain the stronger tree diversity effects at the plot scale. 5. Our results indicate that even for small and less mobile organisms in the leaf litter, effects of tree diversity are stronger at relatively larger scales. The finding emphasize the importance of diverse forest stands, in which mixing of tree species is not restricted to small patches, for supporting arthropod diversity in the leaf litter.
Overyielding in young tree communities does not support the stress-gradient hypothesis and is favoured by functional diversity and higher water availability
<p class="CxSpFirst"><strong>Summary:</strong></p> <ol> <li class="CxSpMiddle">Biodiversity effects on productivity and other ecosystem functions are strongly dependent on climate and resource availability. Based on the stress-gradient hypothesis, under conditions of greater abiotic stress, diversity effects on plant performance are intensified due to the increased relative importance of positive plant interactions. However, whether this hypothesis is consistently applicable in forest systems remains unclear. A field trial was established to test the stress-gradient hypothesis and examine diversity effects on aboveground biomass production of young trees in mixtures exposed to different water availability.</li> <li class="CxSpMiddle">Six native tree species of northern temperate forests (<i>Acer saccharum</i>,<i> Betula papyrifera</i>,<i> Larix laricina</i>,<i> Picea glauca, Pinus strobus</i>,<i> and Quercus rubra</i>) were planted as monocultures and as mixtures of two, four, and six species. For five growing seasons, four replicates of each community were exposed to conditions of either low- or high-water availability created by rainfall exclusion and weekly irrigation, respectively. Growth-years 4 and 5 were significantly different when the climatic water balance of the growing seasons were compared. We tested the effects of functional diversity on: (1) total growth of mixtures under low- and high-water availability, and (2) annual growth in years 4 (higher water availability, 2017) and 5 (lower water availability, 2018).</li> <li class="CxSpMiddle">Annual growth of most species in both years was greater under high- vs. low-water availability. Functional diversity had a significant positive effect on total biomass production and annual growth, and this effect was more strongly expressed under high-water availability. Functional diversity effects on annual growth did not differ between years 4 and 5 regardless of their climatic water balance. Functional and species identity were key to understanding productivity responses to mixture and treatment effects.</li> <li class="CxSpMiddle"> <i>Synthesis</i>: Contrary to the stress-gradient hypothesis, the positive effects of functional diversity on productivity were enhanced by high-water availability and were independent of seasonal water balance.</li> </ol>
Code and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia
<p><strong>Code and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia</strong></p> <p>In revision at Environmental Research letters.</p> <p> </p> <p>J. Camilo Fagua<sup>1</sup>*, Patrick Jantz<sup>1</sup>, Patrick Burns<sup>1</sup>, Richard Massey<sup>1</sup><sub>,</sub> Jeiner Y. Buitrago<sup>2</sup>, Sassan Saatchi<sup>3</sup></p> <p>and Scott J. Goetz<sup>1 </sup></p> <p> </p> <p><sup>1</sup><em> Global Earth Observation & Dynamics of Ecosystems Lab (GEODE), School of Informatics, Computing, and Cyber Systems (SICCS), Northern Arizona University, Flagstaff, Arizona, US<em>.</em></em></p> <p> </p> <p><em><sup>2</sup></em><em> Department of Agronomy, Faculty of Agricultural Sciences, Universidad Nacional de Colombia. Bogota (Colombia).</em></p> <p> </p> <p><em><sup>3</sup></em><em> Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA</em></p> <p> </p> <p>*Corresponding author: J. Camilo Fagua, School of Informatics, Computing, and Cyber Systems (Building #90) 1295 S. Knoles Dr. Flagstaff, AZ 86011. Email: <a href="mailto:Camilo.Fagua@nau.edu">Camilo.Fagua@nau.edu</a></p> <p> </p> <p><strong>1) The files “0_Forest_Structure_maps_in_tif” and “1_Forest_Structure_maps_in_tif” contain seven maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif</strong></p> <p>(a) Canopy height (CH) map: CHOCO_MAP_CH</p> <p>(b) 50th percentile of heights (z_50) map: CHOCO_MAP_z_50</p> <p>(c) Vertical Canopy Heterogeneity (VCH) map: CHOCO_MAP_VCH</p> <p>(d) Standard deviation of normalized heights (z_SD) map: CHOCO_MAP_z_SD</p> <p>(e) Horizontal standard deviation of canopy height (CH_ SD): CHOCO_MAP_CH_SD</p> <p>(f) Horizontal heterogeneity of canopy height (CH_H): CHOCO_MAP_CH_H</p> <p>(g) Rumple Index of canopy height (R_INDEX): CHOCO_MAP_R_INDEX</p> <p> </p> <p><strong>2) The file “2_Diversity_maps_in_tif” contains five maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif</strong></p> <p>(a) Species richness (Richness): MAPS_MEAN_Richness</p> <p>(b) Shannon’s entropy index (ENS-Shannon): MAPS_MEAN_ENS_shannon</p> <p>(c) Simpson’s concentration index (ENS-Simpson): MAPS_MEAN_ENS_Simpson</p> <p>(d) Shannon diversity index (H): MAPS_MEAN_Shannon</p> <p>(e) Simpson diversity index (D): MAPS_MEAN_Simpson</p> <p> </p> <p><strong>3) The file “3_LiDAR_processing” contents data and R codes to estimate forest structural metrics from ALS-LiDAR data (.las) in an Amazon moist forest.</strong></p>
Data from: Do temperate tree species diversity and identity influence soil microbial community function and composition?
Studies of biodiversity-ecosystem function in treed ecosystems have generally focused on aboveground functions. The present study investigates inter-trophic links between tree diversity and soil microbial community function and composition.We examined how microbial communities in surface mineral soil responded to experimental gradients of tree species richness (SR), functional diversity (FD), community-weighted mean trait value (CWM) and tree identity. The site was a 4-yr-old common garden experiment near Montreal, Canada, consisting of deciduous and evergreen tree species mixtures. Microbial community composition, community-level physiological profiles (CLPP) and respiration were evaluated using phospholipid fatty acid (PLFA) analysis and the MicroRespTM system, respectively. The relationship between tree species richness and glucose induced respiration (GIR), basal respiration (BR), metabolic quotient (qCO2) followed a positive but saturating shape. Microbial communities associated with species mixtures were more active (basal respiration (BR)), with higher biomass (glucose induced respiration (GIR)), and used a greater number of carbon sources than monocultures. Communities associated with deciduous tree species used a greater number of carbon sources than those associated with evergreen species, suggesting a greater soil carbon storage capacity. There were no differences in microbial composition (PLFA) between monocultures and SR mixtures. The FD and the CWM of several functional traits affected both BR and GIR. In general, the CWM of traits had stronger effects than did FD, suggesting that certain traits of dominant species have more effect on ecosystem processes than does FD. Both the functions of GIR and BR were positively related to aboveground tree community productivity. Both tree diversity (SR) and identity (species and functional identity – leaf habit) affected soil microbial community respiration, biomass and composition. For the first time, we identified functional traits related to life history strategy, as well as root traits that influence another trophic level, soil microbial community function, via effects on BR and GIR.
Data from: Evolutionary diversity in tropical tree communities peaks at intermediate precipitation
<p>Global patterns of species and evolutionary diversity in plants are primarily determined by a temperature gradient, but precipitation gradients may be more important within the tropics, where plant species richness is positively associated with the amount of rainfall. The impact of precipitation on the distribution of evolutionary diversity, however, is largely unexplored. Here we detail how evolutionary diversity varies along precipitation gradients by bringing together a comprehensive database on the composition of angiosperm tree communities across lowland tropical South America (2,025 inventories from wet to arid biomes), and a new, large-scale phylogenetic hypothesis for the genera that occur in these ecosystems. We find a marked reduction in the evolutionary diversity of communities at low precipitation. However, unlike species richness, evolutionary diversity does not continually increase with rainfall. Rather, our results show that the greatest evolutionary diversity is found in intermediate precipitation regimes, and that there is a decline in evolutionary diversity above 1,490 mm of mean annual rainfall. If conservation is to prioritise evolutionary diversity, areas of intermediate precipitation that are found in the South American 'arc of deforestation', but which have been neglected in the design of protected area networks in the tropics, merit increased conservation attention.</p>
Supplementary material 2: Seu Nico Community Dynamics from: Tree Diversity and Dynamics of the Forest of Seu Nico, Viçosa, Minas Gerais, Brazil - Biodiversity Data Journal 3: e5425 (31 July 2015) https://doi.org/10.3897/BDJ.3.e5425
2868 tree occurrences from two census within 100 plots of 10x10 m in the Forest of Seu Nico (FSN), Viçosa municipality, Minas Gerais, Brazil, including measurements of each tree as well as environmental data from all 100 plots. Dataset consists of seven independent files
Figure 1. from: Tree Diversity and Dynamics of the Forest of Seu Nico, Viçosa, Minas Gerais, Brazil - Biodiversity Data Journal 3: e5425 (31 July 2015) https://doi.org/10.3897/BDJ.3.e5425
Figure 1. - The Forest of Seu Nico (FSN) covers the bottom and the slopes of a small valley on the Bom Sucesso Farm in Viçosa, Minas Gerais, Brazil. Photograph by M. Gastauer from northeastern direction.
The functional significance of tree species diversity in European forests - the FunDivEUROPE dataset
<p><span>The FunDivEUROPE project, short for "Functional Significance of Forest Biodiversity in Europe," aimed at exploring the intricate relationships between forest biodiversity and ecosystem functionality, focusing specifically on European forests. The project was a collaborative effort involving scientists from multiple disciplines and institutions. It entailed a comprehensive, large-scale assessment of forest biodiversity and its impact on ecosystem functions in a network of observational plots spanning the European continent. This extensive network enabled us to systematically examine how variations in tree species diversity and functional traits influenced key ecosystem functions.</span></p> <p><span>In total, 209 mature forest plots measuring 30 x 30 meters were located</span> <span>in six European countries, ranging from boreal to Mediterranean zones, with each representing a major European forest type: Finland (boreal forest), Poland (hemiboreal forest), Germany (temperate deciduous forest), Romania (mountainous deciduous forest), Italy (thermophilous deciduous forest), and Spain Mediterranean mixed forest). Richness levels of one, two, three, four, and five target species were replicated within and across regions.</span></p> <p><span>A major strength of the FunDivEUROPE project was the general philosophy to measure all ecosystem functions in all plots, following the same protocol by the same observers across the six forest types. In each of the 209 plots, 27 ecosystem functions were measured.</span></p> <p><span>Here, we present data on a high number of basic data for each of the 209 plots, describing geographic and geomorphological, as well as soil and bedrock characteristics, climate variables, and several measures of tree diversity. We further show data of the 27 ecosystem functions, which were classified into six groups reflecting basic ecological processes, and which have established links to supporting, provisioning, regulating or cultural ecosystem services. Details about the measurement protocols are provided.</span></p> <p><span>Major results from the FunDivEUROPE project shed light on the fundamental importance of biodiversity in European forests. The project revealed that diverse forests tend to be more resilient to disturbances, sequester more carbon, and provide enhanced diversity of forest-associated taxa. Moreover, the study highlighted the crucial role of particular tree species and functional traits in shaping ecosystem services and functions. The findings of FunDivEUROPE thus offer insights for forest management and conservation practices, advocating for the preservation and restoration of diverse forest ecosystems.</span></p>
Fig. 2 in Bird Diversity Differs Between Industrial Tree Plantations On Borneo: Implications For Conservation Planning
Fig. 2. Species accumulation curves for (A) Sabah Softwoods and (B) Sarawak Planted Forest Project.
Diversity, species coexistence, and functional composition patterns in subtropical Atlantic Forests invaded by non-native trees
<ol> <li>Biological invasions are a major environmental challenge today. Interactions between invasive and native species can significantly shape community structures, influencing co-existence, diversity, and functional composition of species. The subtropical Atlantic forest in southern Brazil, a recognized biodiversity hotspot, provides a unique setting to study these interactions, given its vulnerability to alien tree invasions. </li> <li>Our study sought to elucidate the impacts of such invasions on this fragile ecosystem by addressing key questions: 1) How are tree community diversity patterns affected by the abundance of invading alien tree species? 2) What are the patterns of coexistence between native and alien invasive trees? 3) Is the functional composition of the forests altered by the abundance of invasive trees?</li> <li>To address these questions, we compiled data on the abundance and functional traits of native and invasive trees. We determined the diversity patterns and functional composition of plots with different degrees of invasion. These data were analyzed using Generalized Linear Mixed Models, Principal Component Analysis, and a coexistence index.</li> <li>In plots with a higher abundance of invasive trees, there was a significant decrease in the taxonomic and functional richness of native species. Furthermore, we observed that invasive alien trees coexisted with native species, and as the abundance of invasive trees increased, the native community weighted mean (CWM) of the leaf area and specific leaf area decreased.</li> <li>In conclusion, within the subtropical Atlantic forest areas of southern Brazil, our findings highlight that the abundance of invasive trees adversely affects the taxonomic and functional richness of native species. Furthermore, while invasive alien trees were found to coexist with native species, increased invasive abundance corresponded to a reduction in the leaf area and the specific leaf area of the native community.</li> </ol>
Tree diversity across multiple scales and environmental heterogeneity promote ecosystem multifunctionality in a large temperate forest region
<p><strong>Aim</strong>: Biodiversity across different scales provides multidimensional insurance for ecosystem functioning. Although the positive effects of local scale (α-diversity) biodiversity on ecosystem multifunctionality are widely accepted, species turnover across communities (β-diversity) which is often an important driver of ecosystem functioning did not receive the same attention. This study broadens the understanding of how multiple attributes of biodiversity maintain ecosystem multifunctionality from local to regional scales, across diverse environmental gradients.</p> <p><strong>Location</strong>: North-eastern China.</p> <p><strong>Time period</strong>: 2017.</p> <p><strong>Major taxa studied</strong>: Woody plants.</p> <p><strong>Methods</strong>: We estimate ecosystem multifunctionality using both averaging and modified multiple thresholds (50%, 70% and 90%) approaches. Multiple dimensions of biodiversity across varying spatial scales were measured within the framework of Hill‒Chao numbers. Linear and nonlinear models were used to evaluate the optimal patterns of multifunctionality and biodiversity along the latitude. Using variance decomposition, structural equation modeling and linear mixed models, we explored how multiple attributes of tree diversity at varying spatial scales affect multifunctionality, and how these relationships are modulated by environmental drivers.</p> <p><strong>Results</strong>: Our results show that multifunctionality decreased with increasing latitude, mirroring the pattern of tree diversity along latitudinal gradients. Phylogenetic β-diversity and species α-diversity emerged as crucial diversity indices for sustaining multifunctionality in these temperate forests. Soil and climatic conditions had either direct effects on multifunctionality, or indirect ones mediated by tree diversity. Environmental heterogeneity played a pivotal role in maintaining high levels of multifunctionality, exerting influence both directly and indirectly via phylogenetic β-diversity.</p> <p><strong>Main conclusions</strong>: This study underscores the positive effects of biodiversity on multifunctionality across multiple dimensions. Based on our findings, we conclude that any design of a forested landscape that is aimed at maximizing multifunctionality should consider maintaining high local diversity as well as forest community heterogeneity at varying scales.</p>
Foliar endophyte diversity in eastern Asia-eastern North America disjunct tree species – Influences of host identity, environment, phylogeny, and geographic isolation
<p><span>The well-known eastern Asia (EA) and eastern North America (ENA) floristic disjunction provides a unique system for biogeographic and evolutionary studies. Despite considerable interest in the disjunction, few studies have investigated the patterns and their underlying drivers of allopatric divergence in sister species or clades isolated in the two areas. Endophyte diversity and assembly in disjunct sister taxa, as an ecological trait, may have played an important role in the processes of allopatric evolution, but no studies have examined endophytes in these disjunct lineages. In this study, we compared foliar endophytes (including both fungi and bacteria) in 17 EA-ENA disjunct species pairs from genera representing conifers and major clades of angiosperms, as well as 23 species of </span><em>Cornus</em> from the US and China. We sequenced the ITS of fungi and 16S rDNA of bacteria to understand the composition of the endophyte community and gain insights into the relative roles of geographic isolation, host identity, phylogeny, and environment in shaping endophytic diversity patterns. We detected a much richer fungal than bacterial community in leaves of all species. Beta diversity varied greatly among individuals within species, between species, among genera, and among three natural environmental conditions. Based on a principal coordinates analysis, we found no close clustering of endophyte communities in samples from the same host plant species, from the same genus, or from the same geographic origin (i.e. EA or ENA) (when plants were grown in the same common garden), but we did detect clustering of samples from plants grown in the same environment (i.e., same geographic location). We observed separation of microbes in plant samples of the same species grown in different locations/environments. However, pooled samples across all species from the common garden with the same geographic origin (EA vs. ENA) showed a moderate level of dissimilarity in fungal endophytes between EA and ENA. An overall significant correlation between endophyte community dissimilarity and phylogenetic distance was detected among the disjunct genera but not among species of <em>Cornus</em>. However, significant correlation between order, family, and genera of endophytes and phylogenetic distance of Cornus species was observed. We also found no significant differences in Foliar Endophytic Fungal (FEF) communities between counterparts of disjunct species pairs in EA and ENA in most genera except in <em>Liriodendron</em> and <em>Cornus</em>, although the beta diversity within genera is high. Our results suggest important roles of host identity and environment (geographic locations), and a likely minor role of phylogenetic divergence and biogeographic isolation in shaping the pattern of foliar endophyte diversity and assembly in the EA-ENA disjunct genera, as well as in <em>Cornus</em>. The results further suggest that the sister taxa in EA and ENA are likely different in their foliar endophyte composition when growing in their native habitats due to differences in geographic locations and local environments, which is potentially a factor driving allopatric divergence of species functional features. This hypothesis can be tested by analysis of samples from native habitats.</p>
Recent tree diversity increase in NE Iberian forests following intense management release: a task for animal-dispersed and drought tolerant species
<ol> <li>Under increasing human-related threats to forests, many studies suggest that increasing tree species diversity may boost forest resilience by enhancing the range of species' responses to disturbances. However, it remains unclear whether passive or active forest management strategies should be applied to increase tree diversity. This issue would benefit from investigating which management and environmental factors, together with species' functional traits influence temporal changes in tree species diversity.</li> <li>We explored the influence of the bioclimatic region, land-use history, forest cover, protection, management, forest structure and changes in temperature and precipitation, to explain tree species diversity changes in NE Iberian forests, by comparing 3141 plots from the Spanish National Forest Inventory sampled between 1989 and 2016. Moreover, we assessed which species' functional traits (dispersal habit, drought and shade tolerance) were most relevant for diversity changes.</li> <li>After 27 years, tree species richness and diversity moderately increased in the tree and regeneration layers. This trend occurred mostly in long-established, non-recently managed forests and in those with a lower initial basal area. Increasing temperature had negative effects for diversity increase in the tree layer but positive for the regeneration compartment, while decreasing precipitation showed the opposite effects.</li> <li>Tree species with higher drought tolerance, and especially those animal-dispersed ones arriving from the regional pool, mostly contributed to the local diversity increase. This pattern occurred in all forest types, although the taxonomic array of species varied.</li> <li> <em>Synthesis and applications.</em> The main drivers influencing the passive increase in tree species diversity suggest a primary role of diminishing forest exploitation in this recovery process, fine-tuned by climatic changes. This ecological scenario has particularly favored animal-dispersed tree species with higher drought tolerance, which mostly led the diversity increase. A higher presence of such highly mobile and drought-tolerant species can be crucial to increase functional diversity and, ultimately, increase forest resilience under future scenarios of greater aridity. In light of these results, management strategies should continue fostering the restoration of diversity in once intensively exploited forests while ensuring the maintenance of the already gained tree species diversity.</li> </ol>
Calculating functional diversity metrics using neighbor-joining trees
<p>The study of functional diversity (FD) provides ways to understand phenomena as complex as community assembly or the dynamics of biodiversity change under multiple pressures. Different frameworks are used to quantify FD, either based on dissimilarity matrices (e.g., Rao entropy, functional dendrograms) or multidimensional spaces (e.g., convex hulls, kernel-density hypervolumes), each with their own strengths and limits. Frameworks based on dissimilarity matrices either do not enable the measurement of all components of FD (i.e., richness, divergence, and regularity), or result in the distortion of the functional space. Frameworks based on multidimensional spaces do not allow for comparisons with phylogenetic diversity (PD) measures and can be sensitive to outliers.</p> <p>We propose the use of neighbor-joining trees (NJ) to represent and quantify FD in a way that combines the strengths of current frameworks without many of their weaknesses. Importantly, our approach is uniquely suited for studies that compare FD with PD, as both share the use of trees (NJ or others) and the same mathematical principles.</p> <p>We test the ability of this novel framework to represent the initial functional distances between species with minimal functional space distortion and sensitivity to outliers. The results using NJ are compared with conventional functional dendrograms, convex hulls, and kernel-density hypervolumes using both simulated and empirical datasets.</p> <p>Using NJ, we demonstrate that it is possible to combine much of the flexibility provided by multidimensional spaces with the simplicity of tree-based representations. Moreover, the method is directly comparable with taxonomic diversity (TD) and PD measures, and enables quantification of the richness, divergence and regularity of the functional space.</p>
Data from: Positive effects of tree species diversity on productivity switch to negative after severe drought mortality in a temperate forest experiment
<p>Synthesis of a large body of evidence from field experiments suggests more diverse plant communities are both more productive as well as more resistant to the effects of climatic extremes like drought. However, this view is strongly based on data from grasslands due to limited empirical evidence from tree diversity experiments. Here we report on the relationship between tree diversity and productivity over ten years in a field experiment established in 2005 that was then affected by the 2018 megadrought in central Europe. Across a number of years, tree species diversity and productivity were significantly positively related, however, the slope switched to negative in the year of the drought. Net diversity effects increased through time, with complementarity making greater continuations to the net diversity effect than selection effects. Complementarity was clearly positive (95 % credible interval) in three and five species mixtures before the drought (2012-2016) but was found to decrease in the year of the drought. Selection effects were clearly positive in 2016, and remained positive in 2018, the drought year in two, three, and five species mixtures. Survival of the Norway spruce (<em>Picea abies</em>) plummeted during drought and a negative relationship between species diversity and spruce survival was found. Our findings suggest that tree diversity per se may not buffer communities against the impacts of extreme drought and that tree species composition and the drought tolerance of tree species (i.e., species identity) will be important determinants of community productivity as the prevalence of drought increases.</p>
Data from: Genomic diversity and structure of a Neotropical microendemic fig tree
<p>Genetic diversity is a key component of evolution and unraveling factors that promote genetic differentiation in space and time is a central question in evolutionary biology. One of the most diverse and ecologically important tree genera in tropical forests worldwide is <em>Ficus (Moraceae)</em>. It has been suggested that, given the great dispersal capacity of pollinating fig wasps (Chalcidoidea; Agaonidae), the spatial genetic structure, particularly in monoecious fig species, should be weak. However, no studies have addressed the factors that determine the genetic structure of <em>Ficus</em> species in regions of high geological, geographic, and climatic complexity, such as the Mexican Transition Zone. Using nuclear single nucleotide polymorphisms (5,311 SNPs) derived from low-coverage whole genomes and 17 populations, we analyzed the population genomics of <em>Ficus</em> <em>pringlei</em> to characterize neutral and adaptive genetic variation and structure and its association with geographic barriers such as the Trans-Mexican Volcanic Belt, environmental heterogeneity, and wind connectivity. From genomic data of 71 individuals, high genetic diversity, and the identification of three genomic lineages were recorded (North, South, and Churumuco). The results suggest that genetic variation is primarily determined by climatic heterogeneity. <em>Ficus</em> <em>pringlei</em> populations from the north and south of the Trans-Mexican Volcanic Belt also exhibited minimal genetic differentiation (F<sub>ST</sub>= 0.021), indicating that this mountain range may not act as an insurmountable barrier to gene flow. Wind connectivity is also highlighted in structuring putative adaptive genetic variation, underscoring the intricate complexity of the various factors influencing genetic variation in the species. This study provides information on the possible mechanisms underlying the genetic variation of endemic species of the tropical dry forest of Western Mexico, such as <em>F</em>. <em>pringlei</em>.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.