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Floristic survey of vascular plants of the Parque Estadual da Pedra Selada, Rio de Janeiro, Brazil
<p>The Atlantic Forest is one of the most diverse and threatened phytogeographical domains of the world. Despite that, it includes regions of poor floristic knowledge, even in protected areas. Although the importance of protected areas in conserving the Atlantic Forest hotspot is undisputed, it is necessary to recognize the floristic richness of these areas to propose effective conservation actions. In this sense, online databases have proved to be a promising tool for compiling species lists with relevant biodiversity information. This study is based on the list of vascular plants of the “Parque Estadual da Pedra Selada”, published in the “Catálogo de Plantas das Unidades de Conservação do Brasil’. It summarizes species richness, endemism, and conservation status of this protected area.</p>
TreeGOER 2024 Expansion: Expansion with additional tree and bamboo species identified via the World Checklist of Vascular Plants
<p>The database provides globally observed environmental ranges for an additional list of species not included in the <a href="https://zenodo.org/records/7922927"><strong>TreeGOER database</strong></a>. Candidate species were identified via the <a href="https://powo.science.kew.org/about-wcvp"><strong>World Checklist of Vascular Plants</strong> (WCVP) version 11</a>. Many of the additional species were hybrids or bamboo species that were excluded from <strong>GlobalTreeSearch</strong>. Taxonomical details given in a separate file correspond to information provided by the WCVP, as well as information on the life form of each species. Field <em>n</em> in the taxonomical data sets shows the number of records used to provide range information for the expansion of TreeGOER.</p> <p>Tree species were filtered from the WCVP by selecting species records with an empty <em>acceptedNameUsageID</em> field (a field that refers to a current name if not empty) and afterwards filtering for records where the <em>lifeform_description</em> field contained one from the categories of <u>tree</u> (3580 candidate species for the TreeGOER 2024 expansion), shrub or <u>tree</u> (3129), scrambling shrub or <u>tree</u> (138), climbing shrub or <u>tree</u> (58), succulent shrub or <u>tree</u> (40), succulent <u>tree</u> (37), scrambling <u>tree</u> (32), liana or <u>tree</u> (6), , tuberous <u>tree (3)</u>, tuberous shrub or <u>tree</u> (3), semisucculent <u>tree</u> (2), or semisucculent shrub or <u>tree</u> (3)</p> <p>Species that could <strong><u>not</u></strong> be matched with the <a href="https://tools.bgci.org/global_tree_search.php">GlobalTreeSearch database (version 1.7)</a> were candidates for the expansion of species documented in TreeGOER. Standardization to the WCVP was achieved via the <a href="https://bsapubs.onlinelibrary.wiley.com/doi/full/10.1002/aps3.11388">WorldFlora R package</a>, using the same scripts available in this Rpub: . <a href="https://rpubs.com/Roeland-KINDT/1134151">https://rpubs.com/Roeland-KINDT/1134151</a>.</p> <p>Occurrence data were obtained from the <strong>Global Biodiversity Information Facility</strong> via the following downloads. Downloads were facilitated by prior identification of the <strong>GBIF usageKey</strong> via the <a href="https://docs.ropensci.org/rgbif/reference/name_backbone.html">rgbif::name_backbone</a> function, afterwards filtering records that matched with a current species name in the GBIF backbone taxonomy, using package <a href="https://cran.r-project.org/package=rgbif">rgbif</a> version 3.7-9.</p> <ul> <li>batch 1: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.upqqve">https://doi.org/10.15468/dl.upqqve</a></li> <li>batch 2: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.fhqdpg">https://doi.org/10.15468/dl.fhqdpg</a></li> <li>batch 3: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.w3k3n7">https://doi.org/10.15468/dl.w3k3n7</a></li> <li>batch 4: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.xqp7qg">https://doi.org/10.15468/dl.xqp7qg</a></li> <li>batch 5: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.t92qsg">https://doi.org/10.15468/dl.t92qsg</a></li> <li>batch 6: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.7ug5z5">https://doi.org/10.15468/dl.7ug5z5</a></li> <li>batch 7: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.8tp9p8">https://doi.org/10.15468/dl.8tp9p8</a></li> <li>batch 8: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.ewdj7m">https://doi.org/10.15468/dl.ewdj7m</a></li> <li>batch 9: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.gccja8">https://doi.org/10.15468/dl.gccja8</a></li> <li>batch 10: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.jg7gzs">https://doi.org/10.15468/dl.jg7gzs</a></li> <li>batch 11: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.6gww7b">https://doi.org/10.15468/dl.6gww7b</a></li> <li>batch 12: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.9h8axh">https://doi.org/10.15468/dl.9h8axh</a></li> <li>batch 13: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.mswf23">https://doi.org/10.15468/dl.mswf23</a></li> </ul> <p> </p> <p>For bamboo species, identified by a similar process as documented above but now filtering in the WCVP for the lifeform of <u>bamboo</u>, occurrence data were obtained from the Global Biodiversity Information Facility via the following downloads:</p> <ul> <li>batch 1: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.6xt5qu">https://doi.org/10.15468/dl.6xt5qu</a></li> <li>batch 2: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.tdmva4">https://doi.org/10.15468/dl.tdmva4</a></li> <li>batch 3: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.u2gpxv">https://doi.org/10.15468/dl.u2gpxv</a></li> </ul> <p> </p> <p>After downloading the GBIF occurrence data sets, the same procedures were used to calculate the globally observed environmental ranges as in the TreeGOER database which have been described by Kindt, R. (2023). <strong>TreeGOER: A database with globally observed environmental ranges for 48,129 tree species</strong>. Global Change Biology, 00, 1–16. <a href="https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914">https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914</a>. </p> <p> </p> <p>A new check for the availability of species observations was made also for species listed in the <a href="https://worldagroforestry.org/output/globalusefulnativetrees"><strong>GlobalUsefulNativeTrees database</strong></a>, but not in TreeGOER. Taxonomical details for these species are given as a 'set 2' in the database.</p> <p>Downloads from the Global Biodiversity Information Facility were:</p> <ul> <li>batch 1: GBIF.org (04 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.ajwegx">https://doi.org/10.15468/dl.ajwegx</a></li> <li>batch 2: GBIF.org (04 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.hxk5be">https://doi.org/10.15468/dl.hxk5be</a></li> </ul> <p> </p> <p>Version 2024.06 included a new field in the Tmo10 zones files of 'A18' that flags 717 species that occur in zones where all months have a mininum temperature of 18 degrees or above, using similar methods as the 2024.06 version of TreeGOER.</p> <p> </p> <p>The development of the <strong>TreeGOER 2024 Expansion</strong> was supported by the <strong>Darwin Initiative</strong> to project DAREX001 of <em>Developing a Global Biodiversity Standard certification for tree-planting and restoration</em>, by <strong>Norway’s International Climate and Forest Initiative through the Royal Norwegian Embassy in Ethiopia</strong> to the <em>Provision of Adequate Tree Seed Portfolio</em> project in Ethiopia, by the <strong>Green Climate Fund</strong> through the IUCN-led <em>Transforming the Eastern Province of Rwanda through Adaptation</em> project and through the <em>Readiness proposal on Climate Appropriate Portfolios of Tree Diversity for Burkina Faso</em>, by the <strong>Bezos Earth Fund</strong> to the <em>Bezos Quality Tree Seed for Africa in Kenya and Rwanda</em> project and by the <strong>German International Climate Initiative (IKI)</strong> to the regional tree seed programme on <em>The Right Tree for the Right Place for the Right Purpose in Africa</em>. When using <strong>TreeGOER 2024 Expansion</strong> in your work, cite the publication (Kindt <a href="https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914">2023</a>) as well as this repository using the DOI (<a href="../doi/10.5281/zenodo.11208040">https://zenodo.org/doi/10.5281/zenodo.11208040</a>).</p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p>
Fig. 5 in Petrosal and cranial vascular system of the early Eocene palaeoryctid mammal Eoryctes melanus from northwestern Wyoming, USA
Fig. 5. Palaeoryctid mammal Eoryctes melanus Thewissen and Gingerich, 1989, UM 68074 (UM locality SC-133, Clarks Fork Basin, Wyoming, USA; early Wasatchian Land-Mammal Age, early Eocene), isosurface of cranium rendered from CT scans in ventral view, with neurovascular structures reconstructed based in part on Avizo segmentation (left petrosal in gold; arteries in red; veins in blue; nerves in yellow). The alisphenoid canal is broken on the left side in UM 68074 (see Fig. 1), but is reconstructed here to show the course of the ramus infraorbitalis. Abbreviations: gpn, greater petrosal nerve; ica, internal carotid artery; icn, internal carotid nerve; ijv, internal jugular vein; npc, nerve of pterygoid canal; on + oa, optic nerve and ophthalmic artery; pgv, postglenoid vein; ri, ramus inferior; rio, ramus infraorbitalis; rm, ramus mandibularis; rso, ramus supraorbitalis; V1, ophthalmic nerve, first division of trigeminal nerve; V2, maxillary nerve, second division of trigeminal nerve; V3, mandibular nerve, third division of trigeminal nerve.
Fig. 4 in Petrosal and cranial vascular system of the early Eocene palaeoryctid mammal Eoryctes melanus from northwestern Wyoming, USA
Fig. 4. Palaeoryctid mammal Eoryctes melanus Thewissen and Gingerich, 1989, UM 68074 (UM locality SC-133, Clarks Fork Basin, Wyoming, USA; early Wasatchian Land-Mammal Age, early Eocene), isosurface of right endocranium rendered from CT scans in ventral view, with neurovascular structures reconstructed based in part on Avizo segmentation (petrosal in gold; arteries in red; veins in blue; nerves in yellow). Segment of ramus superior is transparent to show hidden capsuloparietal emissary vein; holes in squamosal are damage. Abbreviations: ar, annular ridge; as, alisphenoid; ccf, caudal cranial fossa; cpev, capsuloparietal emissary vein; enav, ethmoidal nerve, artery, and vein; eo, exoccipital; fr, frontal; ica, internal carotid artery; ijv, internal jugular vein; ips, inferior petrosal sinus; mcf, middle cranial fossa; os, orbitosphenoid; pa, parietal; pca, pars canalicularis; pco, pars cochlearis; rcf, rostral cranial fossa; ri, ramus inferior; rs, ramus superior; rso, ramus supraorbitalis with accompanying vein; rt, ramus temporalis with accompanying vein; so, supraoccipital; sq, squamosal; ss, sigmoid sinus; tc, transverse crest; ts, transverse sinus; tt, tegmen tympani; va, vestibular aqueduct.
Fig. 3 in Petrosal and cranial vascular system of the early Eocene palaeoryctid mammal Eoryctes melanus from northwestern Wyoming, USA
Fig. 3. Palaeoryctid mammal Eoryctes melanus Thewissen and Gingerich, 1989, UM 68074 (UM locality SC-133, Clarks Fork Basin, Wyoming, USA; early Wasatchian Land-Mammal Age, early Eocene), isosurfaces rendered from CT scans in medial view. A. Left endocranium (petrosal in gold; parietal in yellow; basi- and alisphenoid in red; pre- and orbitosphenoid in blue; frontal in green). B. Left petrosal. C. Left petrosal with neurovascular structures reconstructed (redrawn from Avizo segmentation; arteries in red; nerves in yellow). Abbreviations: as, alisphenoid; bo, basioccipital; bs, basisphenoid; cc, cochlear canaliculus; cn VII, cranial nerve VII; crp, crista petrosa; eo, exoccipital; ew, epitympanic wing; fr, frontal; frt, foramen for ramus temporalis; gpn, greater petrosal nerve; gri, groove for ramus inferior; grs, groove for ramus superior; hF, hiatus Fallopii; hyf, hypophyseal fossa; iam, internal acoustic meatus; ica, internal carotid artery; M3, upper third molar; mcf, middle cranial fossa; os, orbitosphenoid; otc, orbitotemporal canal; otg, orbitotemporal groove; pa, parietal; pal, palatine; pc, promontory canal; pca, pars canalicularis; pco, pars cochlearis; pe, petrosal; ps, presphenoid; ri, ramus inferior; rs, ramus superior; rtp, rostral tympanic process; saf, subarcuate fossa; sips, sulcus for inferior petrosal sinus; so, supraoccipital; sof(br), sphenorbital fissure (broken); sq, squamosal; sss, sulcus for sigmoid sinus; tt, tegmen tympani; va, vestibular aqueduct.
Fig. 2 in Petrosal and cranial vascular system of the early Eocene palaeoryctid mammal Eoryctes melanus from northwestern Wyoming, USA
Fig. 2. Palaeoryctid mammal Eoryctes melanus Thewissen and Gingerich, 1989, UM 68074 (UM locality SC-133, Clarks Fork Basin, Wyoming, USA; early Wasatchian Land-Mammal Age, early Eocene), isosurface of left petrosal rendered from CT scans in ventral view. A. Solid petrosal, medial section of caudal tympanic process (1), lateral section of caudal tympanic process, medial and lateral to stapedius fossa (1, 3, respectively). B. Transparent petrosal with internal carotid artery system (in red). C. Transparent petrosal with facial nerve (in yellow) and stapedius muscle and its tendon (in red and white, respectively). Neurovascular structures redrawn from Avizo segmentation. Abbreviations: cf, cochlear fossula; ci, crista interfenestralis; cn VII, cranial nerve VII; cp, crista parotica; er, epitympanic recess; ew, epitympanic wing; fi, fossa incudis; fn, facial nerve; fsa, foramen for stapedial artery; gg, geniculate ganglion; gpn, greater petrosal nerve; ica, internal carotid artery; jn, jugular notch; pc, promontory canal; pcf, posterior carotid foramen; pp, paroccipital process; pr, promontorium; ri, ramus inferior; rs, ramus superior; rtp, rostral tympanic process; sc, stapedial canal; sf, stapedius fossa; sm, stapedius muscle; smn, stylomastoid notch; smt, stapedius muscle tendon; th, tympanohyal; tt, tegmen tympani; ttf, tensor tympani fossa.
Dataset: LeMaitre Vascular, Inc. (LMAT) Stock Performance
This dataset provides historical stock market performance data for specific companies. It enables users to analyze and understand the past trends and fluctuations in stock prices over time. This information can be utilized for various purposes such as investment analysis, financial research, and market trend forecasting.
Fig. 2 in The Flora Of Vascular Plants In The Nature Reserve "Pašuliene Forest"
Fig. 2. Territory of the nature reserve "Pašuliene Forest" and vicinity in two-verst map published in 1833, issued in Russia (left), and in tophographical map of 1925, issued in Latvia (right).
Figura 8 in Flora vascular dos banhados do Parque Natural Municipal da Ronda, São Francisco de Paula, Rio Grande do Sul, Brasil¹
Figura 8. Sondagens de solo realizadas nas quatro áreas úmidas (AU), estudadas no Parque Natural Municipal da Ronda (PNMR), São Francisco de Paula, RS. A. AU1, B. AU2, C. AU3 e D. AU4. Fotos: Fabrícia Barbieri.
Figura 5 in Flora vascular dos banhados do Parque Natural Municipal da Ronda, São Francisco de Paula, Rio Grande do Sul, Brasil¹
Figura 5. Famílias botânicas registradas nas áreas úmidas do Parque Natural Municipal da Ronda (PNMR), São Francisco de Paula, RS.
Figura 2 in Flora vascular dos banhados do Parque Natural Municipal da Ronda, São Francisco de Paula, Rio Grande do Sul, Brasil¹
Figura 2. Vista geral das quatro áreas úmidas (AU), estudadas no Parque Natural Municipal da Ronda (PNMR), São Francisco de Paula. A. AU1; B. AU2; C. AU3 e D. AU4. Fotos: Fabrícia Barbieri.
Figura 1 in RiquezA e fitossociologiA de plAntAs VAsculAres eM dunAs costeirAs de Torres, Rio GrAnde do Sul, BrAsil
Figura 1. Área de estudo com a localização das transecções e parcelas amostradas. Torres, Rio Grande do Sul, Brasil.
Figura 3 in Lista atualizada e aspectos sobre a conservação DA floRA VAScuLAR do Parque Estadual do Turvo, Rio Grande do Sul, Brasil
Figura 3. Ambientes existentes no Parque Estadual do Turvo, RS, Brasil. A. Lajedo do rio Uruguai; B. Leito e lajedo do rio Turvo; C. Floresta Estacional Decidual; D. Banhado; E. Campestre. Fotos: A e C. Paulo Brack; B, D-E. Willian S. Piovesani.
Figura 5 in Lista atualizada e aspectos sobre a conservação DA floRA VAScuLAR do Parque Estadual do Turvo, Rio Grande do Sul, Brasil
Figura 5. Algumas espécies ocorrentes no Parque Estadual do Turvo, RS, Brasil. A. Trimezia spathata (Iridaceae); B. Salvia guaranitica (Lamiaceae); C. Dicella nucifera (Malpighiaceae); D. Callianthe picta (Malvaceae); E. Ficus guaranitica (Moraceae); F. Plinia rivularis (Myrtaceae); G. Grandiphyllum divaricatum (Orchidaceae); H. Warrea warreana (Orchidaceae); I. Oxalis cytisoides (Oxalidaceae); J. Scoparia hassleriana (Plantaginaceae); K. Portulaca hatschbachii (Portulacaceae); L. Pleopeltis hirsutissima (Polypodiaceae). Fotos: A-G, I-L. Willian S. Piovesani; H. Cassio Rabuske.
Fig. 2 - A in Report 2020 on plant biodiversity in Italy: native and alien vascular flora
Fig. 2 - A) Poa magellensis F.Conti & Bartolucci. Endemic to Italy, described in 2020. / Specie endemica italiana descritta nel 2020. (Photo: / Foto: Fabrizio Bartolucci). B) Gymnospermium scipetarum Paparisto & Qosja ex E.Mayer & Pulević subsp. eddae Rosati, Farris, Fascetti & Selvi. Endemic to Italy, described in 2018. / Sottospecie endemica italiana descritta nel 2018. (Photo: / Foto: Leonardo Rosati).
Fig. 1 in Report 2020 on plant biodiversity in Italy: native and alien vascular flora
Fig. 1 - Hieracium tolstoii Fen. & Zahn. Endemic to Italy, recognized as extinct in 2019. / Specie endemica italiana dichiarata estinta nel 2019 (FI051948; Scan / Scansione: Erbario dell'Università di Firenze).
Fig. 1 in Vascular flora of Milan Malpensa airport (Lombardy, Italy). Part I: checklist
Fig. 1 - Location of the study area at national (a: red arrow) and provincial level (b: red contour) and a simplified map of the Milan Malpensa airport (c): green color highlights the vegetated areas. / Localizzazione dell'area di studio a livello nazionale (a: freccia rossa) e provinciale (b: contorno rosso) e una mappa semplificata del sedime aeroportuale di Milano Malpensa (c): il colore verde evidenzia le aree vegetate. (Drawing / disegno: M. Martignoni).
Linked collectors and determiners for: Checklist of vascular plants of the projected landscape reserve "Lesovyi Kanyon" (Kherson region, Ukraine).
Natural history specimen data linked to collectors and determiners held within, "Checklist of vascular plants of the projected landscape reserve "Lesovyi Kanyon" (Kherson region, Ukraine)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2">https://bionomia.net/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2">https://gbif.org/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Herbarium UGDA - Vascular Plants Collection.
Natural history specimen data linked to collectors and determiners held within, "Herbarium UGDA - Vascular Plants Collection". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/ecafe5de-e81e-4766-848d-326fafd87876">https://bionomia.net/dataset/ecafe5de-e81e-4766-848d-326fafd87876</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/ecafe5de-e81e-4766-848d-326fafd87876">https://gbif.org/dataset/ecafe5de-e81e-4766-848d-326fafd87876</a>. Formatted as a Frictionless Data package.
Fig. 4 in Vascular plant diversity of the Gogunsan Archipelago in the Korean Peninsula
Fig. 4. Dendrograms showing the degree of Sørensen similarity based on vascular flora data of the Gogunsan Archipelago.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.