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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
H3K27me3 and CTCF ChIP-seq in reciprocal wild-type and SmcHD1 MommeD1mut MEF cell lines
GEO Series GSE122019. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation [ChIPmentation]
GEO Series GSE197629. Mus musculus. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP-Chip tiling array for CTCF and Rad21 in mouse β-TC3 cells (pancreatic insulinoma) MV+ (lens epithelium) and RAG cells (renal adenocarcinoma) over panel of genes including Pax6, Sox2, Otx2, Sox9.
GEO Series GSE119658. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Disentangling the architectural and non-architectural functions of CTCF and cohesin in global gene regulation [ChIP-Seq]
GEO Series GSE262519. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion [RCMC]
GEO Series GSE285012. Mus musculus. 6 samples. Type: Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection
GEO Series GSE138646. Homo sapiens; Mus musculus. 790 samples. Type: Expression profiling by high throughput sequencing; Other.
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
GEO Series GSE71275. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [Hi-C]
GEO Series GSE234292. Mus musculus. 4 samples. Type: Other.
CTCF confers local nucleosome resiliency after DNA replication and during mitosis
GEO Series GSE131356. Mus musculus. 50 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Facultative CTCF sites moderate mammary super-enhancer activity and regulate juxtaposed gene in non-mammary cells [RNA-seq]
GEO Series GSE92931. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Multi-omics datasets for finer-scale dissection of chromatin architecture alterations in radiation induced malignant transformation of bronchial epithelial cells [CTCF CUT&Tag]
GEO Series GSE272819. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF regulates global chromatin accessibility and transcription during rod photoreceptor development
GEO Series GSE269683. Mus musculus. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [4C]
GEO Series GSE182315. Homo sapiens. 36 samples. Type: Other.
Facultative CTCF sites moderate mammary super-enhancer activity and regulate juxtaposed gene in non-mammary cells
GEO Series GSE92932. Mus musculus. 37 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins
GEO Series GSE38864. Homo sapiens. 6 samples. Type: Expression profiling by array.
Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes
GEO Series GSE180566. Homo sapiens. 146 samples. Type: Other.
ChIP-seq analysis of CTCF in distal limbs at mouse E12.5 using anti-CTCF
GEO Series GSE96558. Mus musculus. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [ChIP-seq]
GEO Series GSE156096. Danio rerio. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Tcf1-CTCF cooperativity shapes genomic architecture to promote CD8+ T cell homeostasis [RNA-Seq]
GEO Series GSE179725. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
CTCF is dispensable for cell fate conversion but facilitates acute cellular responses [RNA-Seq]
GEO Series GSE140529. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.