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660
datasets available to search
ShareScore release 0.9.0
Dataset results
660 results for “Genome assemblies”
Data from: Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly
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Data from: Genomic characterization of large heterochromatic gaps in the human genome assembly
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Data for: Benchmarking Oxford Nanopore read assemblers for high-quality molluscan genomes
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Metagenome assembled genomes from mouse gut microbiota
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Whole genome sequencing and assembly of Eukaryotic microbes isolated from ISS environmental surface Kirovograd region soil Chernobyl Nuclear Power Plant and Chernobyl Exclusion Zone
The whole-genome sequences of eight fungal strains that were selected for exposure to microgravity at the International Space Station are presented here. These baseline sequences will help to understand the observed production of novel bioactive compounds.
Organization, genomic targeting and assembly of three distinct SWI/SNF chromatin remodeling complexes in Arabidopsis [ChIP-seq]
GEO Series GSE218841. Arabidopsis. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with contrasting susceptibilities to Ralstonia solanacearum [RNAseq_expression_tissues]
GEO Series GSE283679. Solanum dulcamara. 5 samples. Type: Expression profiling by high throughput sequencing.
A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi
GEO Series GSE121872. Peltaster fructicola. 3 samples. Type: Expression profiling by high throughput sequencing.
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq]
GEO Series GSE132937. Populus trichocarpa. 45 samples. Type: Expression profiling by high throughput sequencing.
Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling [HiC]
GEO Series GSE120751. Drosophila virilis; Drosophila melanogaster; Drosophila busckii. 5 samples. Type: Other; Third-party reanalysis.
Coordination and assembly of protein complexes encoded across mitochondrial and nuclear genomes is assisted by mtCLPXP in Arabidopsis thaliana
GEO Series GSE141942. Arabidopsis thaliana. 9 samples. Type: Expression profiling by high throughput sequencing.
Reference-guided genome assembly of long non-coding RNA transcripts reveals target genes associated with Crohn’s disease
GEO Series GSE317503. Homo sapiens. 140 samples. Type: Expression profiling by high throughput sequencing.
De Novo Genome Assembly of Guinea Grass Exposed to Elevated CO2 and Temperature
GEO Series GSE122194. Megathyrsus maximus. 33 samples. Type: Expression profiling by high throughput sequencing.
A chromosome-level genome assembly provides insights into the environmental adaptability and outbreaks of Chlorops oryzae
GEO Series GSE210874. Chlorops oryzae. 1 samples. Type: Other.
Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with contrasting susceptibilities to Ralstonia solanacearum
GEO Series GSE262401. Solanum dulcamara. 1 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide promoter assembly mechanisms in E. coli measured at single base resolution
GEO Series GSE189206. Escherichia coli. 50 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [Bisulfite-Seq]
GEO Series GSE132935. Populus trichocarpa. 10 samples. Type: Methylation profiling by high throughput sequencing.
Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling
GEO Series GSE120752. Drosophila melanogaster; Drosophila virilis; Drosophila busckii. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Discordant genome assemblies drastically alter the interpretation of single cell RNA sequencing data which can be mitigated by a novel integration method
GEO Series GSE194093. Astyanax mexicanus. 1 samples. Type: Expression profiling by high throughput sequencing.
A high-quality chromosome-level genome assembly of the traditional Chinese medicinal herb Zanthoxylum nitidum
GEO Series GSE281536. Zanthoxylum nitidum. 21 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.