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FIGURE 6 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 6. Bayesian phylogenetic reconstruction of a part of the genus Caloplaca (sensu stricto) using the ITS DNA locus. The epilithic Caloplaca fluviatilis is unresolved in polytomy with epiphytic lineages of C. cerina and C. stillicidiorum.
FIGURE 9 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 9. Bayesian phylogenetic reconstruction of Rufoplaca using the ITS DNA locus. Sequences from the Altai-Sayan region are in grey squares.
FIGURE 7 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 7. 'Caloplaca' anularis group (A) and Pachypeltis (B–E). A, 'Caloplaca' cf. bohlinii (Vondrák 18251) distinguished from 'C.' anularis by orange thallus with more frequent apothecia; B, Pachypeltis insularis (Vondrák 10340); C, Pachypeltis intrudens (Vondrák 18059); D, Pachypeltis cf. pachythallina (large squamules) on Calogaya (Vondrák 12649); E, Pachypeltis phoenicopta (Vondrák 18695) having deep orange pycnidia contrasting with pale yellow colour of thallus; F, detail of areoles of P. phoenicopta (Vondrák 18695) showing patches of white pruina that gives the typical pale yellow colour to the thallus. All bars, 1 mm.
FIGURE 4 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 4. Species richness accumulation curves for localities in the four categories of habitats. A, all species included; B, only species recorded in a single category included.
FIGURE 14 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 14. Bayesian phylogenetic reconstruction of a part of Variospora using the ITS DNA locus. Sequences from the Altai-Sayan region are in bold.
FIGURE 3 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 3. Species and genera of Teloschistaceae recorded in southern Siberia sorted according to their preference to humidity (legend in the upper left corner) and altitude.
FIGURE 2 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 2. Classification within Teloschistaceae displayed on the single locus ITS tree (2372 sequences included, maximum likelihood method, branches with the bootstrap support ≥ 70% are thick). Genera and groups putatively on generic level are collapsed into single terminals. Groups occurring in southern Siberia are linked with red names on the right. Pale grey link: genera with 1–2 species; medium grey, 3–5 species; black, 6 and more species.
FIGURE 1 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 1. Sampling sites. Green-humid non-alpine, blue-humid alpine, orange-arid non-alpine, yellow-arid alpine. Numbers of sites correspond with Appendix 1.
FIGURE 10 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 10. Rufoplaca (A–E). A, Rufoplaca arenaria sensu lato (Vondrák 18371; on mineralized wood) with apothecia more red than orange; B, Rufoplaca subpallida sensu lato (Vondrák 9929) with a distinct grey thallus, brown-orange apothecial disc and pale orange apothecial margin; C, Rufoplaca sp. 1 (Vondrák 12663) with slight olive tinge in apothecial discs; D, Rufoplaca sp. 2 (Vondrák 9924) forming bleached necrosis on Acarospora sp.; E, Rufoplaca sp. 3 (Davydov 17245) with large apothecia and a yellow outer part of the true exciple. All bars, 1 mm.
FIGURE 5 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 5. Athallia (A), Caloplaca sensu stricto (B), Flavoplaca (C), Squamulea (D) and Xanthomendoza (E,F). A, Athallia sp. (Vondrák 18073); B, holotype of Caloplaca fluviatilis; C, Flavoplaca oasis (Vondrák 18222) with indistinct marginal thallus lobes (character typical for Mediterranean-European F. polycarpa); D, Squamulea sp. (Vondrák 18682) resembling small morphotypes of Squamulea irrubescens; E, Xanthomendoza trachyphylla, a common morphotype (Vondrák 18044); F, X. trachyphylla with pruinose thallus on limestone (Vondrák 18028). All bars, 1 mm.
FIGURE 8 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 8. Bayesian phylogenetic reconstruction in Pachypeltis using the ITS DNA locus. Sequences from the Altai-Sayan region are in bold.
FIGURE 16 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 16. 'Caloplaca' exsecuta (A, B), Xanthocarpia (C) and an unknown 'Caloplaca' (D). A, 'Caloplaca' exsecuta (Vondrák 11110) with yellow-orange discs; B, 'C.' exsecuta (Vondrák 11105) with ferrugineous red discs; C, Xanthocarpia sp. (Vondrák 18686) resembling the Mediterranean X. marmorata; D, unknown 'Caloplaca' with unresolved ITS position within Xanthorioidae (Vondrák 18687). All bars, 1 mm.
FIGURE 13 in The lichen family Teloschistaceae in the Altai-Sayan region (Central Asia)
FIGURE 13. Bayesian phylogenetic reconstruction employing the ITS DNA to show the relationship of Shackeltonia and 'Caloplaca' epithallina.
Figure 1 in Beetles and lichens: tracing the origins and evolution of lichenophagy within the darkling beetle tribe Helopini (Coleoptera: Tenebrionidae)
Figure 1. Maximum likelihood phylogenetic tree reconstruction based on the concatenated dataset. Branch colours indicate subtribal groupings (yellow, Enoplopodina; red, Cylindrinotina; and blue, Helopina). Circles in nodes represent values of bootstrap support (BT), posterior probabilities (PP), gene concordance factors (gCF), and site concordance factors (sCF) as indicated in the key. Clades not recovered in the BI analysis are depicted with white PP. Beetle illustrations correspond to terminal taxa as indicated by the leưering in brackets.
Figure 2 in Beetles and lichens: tracing the origins and evolution of lichenophagy within the darkling beetle tribe Helopini (Coleoptera: Tenebrionidae)
Figure 2. Results of the ancestral state estimation analysis. Terminal taxa are colour-coded according to their state as illustrated in the key. Pie charts demonstrate the probability of the ancestral state at each node. In order to provide a time frame for the emergence of different ancestral modes, a time axis is also provided (based on the BEAST run calibrated by known substitution rates). A, evolution of feeding modes under the ER model. B, evolution of habitat preferences under the SYM model within the tribe Helopini.
FIGURE 2. A, B & C in Micarea fennica, a new lignicolous lichen species from Finland
FIGURE 2. A, B & C Micarea fennica sp. nov. (holotype H). A, Stalked pycnidium extruding mesoconidia, scale bar 100 μm; B, Mesoconidia in water, scale bar 10 μm; C, Habit, scale bar 1mm; D, Collection locality of M. fennica in Kalajanvuori old-growth forest in central Finland.
FIGURE 1 in Micarea fennica, a new lignicolous lichen species from Finland
FIGURE 1. Phylogenetic position of Micarea fennica sp. nov. (shown in bold). A maximum likelihood phylogram obtained from RAxML analysis based on the combined ITS, mtSSU and Mcm7 data set. Branches supported with bootstrap values ≥75% in RAxML analyses are shown above nodes.
FIGURE 5 in New species and records of lichens from Bolivia
FIGURE 5. Bayesian phylogenetic tree of Malmidea based on mrSSU data set. Posterior probabilities are shown above branches. Internal branches, considered strongly supported, are represented by thicker lines. The newly sequenced specimens are marked in bold and collecting numbers precede the species names. In case of sequences downloaded from GenBank accession numbers precede the species names. The newly described M. attenboroughii is highlighted. Savoronala madagascariensis and two species of Sprucidea were used as outgroup.
FIGURE 3. Haplotype network showing relationships among ITS haplotypes between Lepra amaroides, L. pseudosubventosa and L. subventosa s in New species and records of lichens from Bolivia
FIGURE 3. Haplotype network showing relationships among ITS haplotypes between Lepra amaroides, L. pseudosubventosa and L. subventosa s.str. Sizes of circles are proportional to the number of specimens per haplotype. Chemotypes are described below specimen's data. Numbers in brackets near lines between haplotypes represent number of mutational steps.
FIGURE 7 in New species and records of lichens from Bolivia
FIGURE 7. Maximum likelihood phylogenetic tree of Micarea based on mrSSU data set. High nodal support values are indicated by bold branches, including ML bootstrap values ≥ 75% and MCMC posterior probability ≥ 0.9. Micarea hedlundii is in bold and highlighted. GenBank, accession numbers precede the species names. Byssolecania variabilis, Fellhanera viridisorediata and Calopadia foliicola were used as outgroup.
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