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Figure 2a from: Cocuzza GEM, Di Silvestro S, Giordano R, Rapisarda C (2015) Congruence between cytochrome oxidase I (COI) and morphological data in Anuraphis spp. (Hemiptera, Aphididae) with a comparison between the utility of the 5' barcode and 3' COI regions. ZooKeys 529: 123-144. https://doi.org/10.3897/zookeys.529.6081
Figure 2a - Likelihood tree estimated using 648 bp at the 3' end of COI for selected Anuraphis species.
Figure 1b from: Cocuzza GEM, Di Silvestro S, Giordano R, Rapisarda C (2015) Congruence between cytochrome oxidase I (COI) and morphological data in Anuraphis spp. (Hemiptera, Aphididae) with a comparison between the utility of the 5' barcode and 3' COI regions. ZooKeys 529: 123-144. https://doi.org/10.3897/zookeys.529.6081
Figure 1b - Neighbor-Joining tree showing relationships among selected Anuraphis species estimated using 658 bp at the 5' end of the COI mitochondrial gene. Distance were estimated using the p-distance model of sequence evolution.
Figure 3 from: Cocuzza GEM, Di Silvestro S, Giordano R, Rapisarda C (2015) Congruence between cytochrome oxidase I (COI) and morphological data in Anuraphis spp. (Hemiptera, Aphididae) with a comparison between the utility of the 5' barcode and 3' COI regions. ZooKeys 529: 123-144. https://doi.org/10.3897/zookeys.529.6081
Figure 3 - Dendrogram of cluster-species results based on Mahalanobis' generalized distances in apterae for Anuraphis spp. (20 individual for each species) based on 16 morphometric characters (from Barbagallo and Cocuzza 2003).
Figure 8 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 8 - NanoCT−SEM Plate 2. A–F Zospeum isselianum, neotype (CSR SASA 37013), Turjeva jama G–H Zospeum isselianum (SMNH 2216), Jama na Zgornjih Brsnikih I–L Zospeum sp. (CSR SASA 37698a), Konečka zijalka.
Figure 2 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 2 - Historical material: A Zospeum isselianum syntype (MZUT M3232): upper mountains of Natisone River valley B–F Zospeum isselianum topotype: Turjeva jama G–P Specimens labelled as "Zospeum alpestre" in the Bourguignat Collection (MHNG 7898/2) from "Cav[erne]. de Carniole".
Figure 17 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 17 - Light micrograph of a section of the reproductive tract of Zospeum sp. (Konečka zijalka) (CSR SASA 21675). A Gonad (g) with acinus of the ovotestis including the germinal epithelial ring (ger) surrounding the acinar lumina (al), sustentacular cells (Sertoli cells) (sc) and oogonia (og) B Digestive gland (dg), hermaphroditic duct (hd) lined with cilia (c), posterior loop of the intestine (pi), receptaculum seminis (rs) containing allospermatozoa with spermatozoa oriented towards and apical ends touching the epithelial cells, and long motile cilia (ce) of intestine (i).
Figure 16 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 16 - Light micrograph of the histological appearance of the digestive tract of Zospeum sp. (Konečka zijalka) (CSR SASA 21675). A−B Bilobed muscular gizzard (mg) with epithelium showing columnar cells (cc) with microvillous apical surfaces (mv), posterior loop of the intestine (pi) with ciliated epithelium (ce) B Elaborate muscular plates (mp), thick cuticle (cu), highly ciliated rectum (r), gastric pouch (gp), digestive gland (dg) and hermaphroditic duct.
Figure 14 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 14 - Images of the radula of Zospeum isselianum (Turjeva jama) (CSR SASA 37013 conspecific) and Zospeum sp. (Konečka zijalka) (CSR SASA 21675). A−D SEM of the radular ribbon of topotypic Zospeum isselianum A Radular ribbon showing adhesive layer of contact zone with odontophore B SEM overview showing rachidian teeth (r) and lateral teeth (l) C Rows of lateral teeth bearing fine medial groove D Marginal teeth E Light micrograph showing the histological appearance of the radular sheath of Zospeum sp. (Konečka zijalka) showing the inferior epithelium (ie) attached to the radular membrane (rm) mineralizing cells (mc) with degenerating nuclei and radular teeth (rt).
Figure 4 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 4 - Overview of morphological assignments, molecular species delimitation results and integrative taxonomic treatment of each of the four clusters, which are indicated by the longitudinal black bars for either the ABDG or the SP approach. Numbers indicate individual specimens; ABGD = Automatic Barcode Gap Discovery; SP = Statistical Parsimony.
Figure 13 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 13 - A Light micrograph showing the histological appearance of Zospeum sp. (Konečka zijalka) (CSR SASA 21675) with the mantel cavity (mc), mucus glands (mg), oesophagus (oe) bearing thick cuticular sheath (cs) and leading into the crop (c), the buccal ganglia (bg), and the cephalopodial portion of the reproductive system including penis (p) and vas deferens (vd) B Paired cerebral ganglia united by the cerebral commissure situated just dorsal to the origin of the oesophagus in the buccal mass.
Figure 12 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 12 - Light micrograph showing histological overview of the digestive system of Zospeum sp. (Konečka zijalka) (CSR SASA 21675). A Mouth and buccal apparatus. Mouth slit between oral lappets (m), crescent-shaped jaw (j), radula (r), pharynx (ph), digestive gland (dg), intestine (i), kidney (k), columellar muscle (cm), and pedal ganglia (peg) B Mantle gland (mag), sigmoid intestine (si), radular sac (rs), cerebral ganglion (cg), mucus glands (mg), kidney (k), heart showing auricle and ventricle (h), digestive gland (dg), columellar muscle (cm), oesophagus (oe) and salivary glands (sg).
Figure 7 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 7 - Kimura−2-parameter (K2P) genetic distance table in %. Delineated species are marked with boxes. For each individual specimen, its morphospecies designation and genetic distance data to all remaining specimens are given.
Figure 11 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 11 - Type and shell images Plate 5: A–E Zospeum kupitzense holotype: (SMF 256354) F–H Zospeum kupitzense (SMNH 3291), Ložekarjeva zijalka I–M Zospeum amoenum (RS59), Potočka zijalka.
Figure 10 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 10 - NanoCT−SEM Plate 4. A–F Zospeum kupitzense (RS3291), Ložekarjeva zijalka G. Zospeum alpestre (SMNH 2216), Kamniška jama H, I−L Zospeum isselianum Ihanščica cave J−K Zospeum amoenum (RS59), Potočka zijalka.
Figure 1 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 1 - Zospeum isselianum potential distribution collated from the literature and museum collections (I. Sajko, CSR SASA).
Figure 15 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 15 - Light micrograph showing histological appearance of the radular complex of Zospeum sp. (Konečka zijalka) (CSR SASA 21675). A Odontoblasts (odb) grouped in lower posterior section of radular sheath, radular teeth (rt), odontophore (od), and collostyle (col) B Section through an acinus of the ovotestis showing some stages of development of sustentacular cells (Sertoli cells) (sc) with spermatogonia (spg), spermatids (sp) and oogonia (og).
Figure 3 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 3 - Geographical position and river drainage systems of the Julian Alps and the Kamnik Savinja Alps range. Sampling sites: 1 Turjeva jama 2 Ložekarjeva jama 3 Konečka zijalka 4 Potočka zijalka 5 Jama na Zgornjih Brsnikih 6 Tomažičeva zijalka 7 Kamniška jama 8 Ihanščica cave. Digital terrain model from Jarvis et al., 2008. River network data courtesy of Public Information of Slovenia, the Surveying and Mapping Authority of the Republic of Slovenia, DPK1000V (2008).
Figure 9 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
Figure 9 - SEM Microstructures Plate 3. A−F Zospeum isselianum (CSR SASA 37013 conspecific), Turjeva jama G−H Zospeum sp. (CSR SASA 21675), Konečka zijalka I−L Zospeum kupitzense (SMNH 3291), Ložekarjeva jama M−O Zospeum amoenum (RS103), Ihanščica cave.
Figure 3 from: Sulistyo B, Boos R, Cootes J, Gravendeel B (2015) Dendrochilum hampelii (Coelogyninae, Epidendroideae, Orchidaceae) traded as 'Big Pink' is a new species, not a hybrid: evidence from nrITS, matK and ycf1 sequence data. PhytoKeys 56: 83-97. https://doi.org/10.3897/phytokeys.56.5432
Figure 3 - Dendrochilum hampelii: a habit b floral bract c flower d flower (sepals and petals removed) e dorsal sepal f petal g lateral sepal h labellum i column, front view j anther k pollinia. Drawing by Esmee Winkel based on Hort. bot. Leiden 20130654 (L! [spirit no. WAG0116920]).
Figure 2 from: Sulistyo B, Boos R, Cootes J, Gravendeel B (2015) Dendrochilum hampelii (Coelogyninae, Epidendroideae, Orchidaceae) traded as 'Big Pink' is a new species, not a hybrid: evidence from nrITS, matK and ycf1 sequence data. PhytoKeys 56: 83-97. https://doi.org/10.3897/phytokeys.56.5432
Figure 2 - Above: alignment of nrITS sequences of the ingroup species from our phylogenetic analyses. For 'Big Pink' (Dendrochilum hampelii) and its apparently closest relatives among our study species, electropherograms are shown in red boxes. The electropherograms show clear distinct peaks; the species-specific mutation of 'Big Pink' is indicated by a red arrow. Below: electropherogram of 'Big Pink' (Dendrochilum hampelii) covering a larger region of nrITS; the distinct single peaks in both the forward and reverse sequences suggest this is a wild species rather than an artificial hybrid (see text for details).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.