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641 results for “data validation”
GPM Ground Validation NASA ER-2 Navigation Data IPHEx V1
The GPM Ground Validation NASA ER-2 Navigation Data IPHEx dataset was gathered during the GPM Ground Validation Integrated Precipitation and Hydrology Experiment (IPHEx) in North Carolina. The ER-2 Aircraft flew during the IPHEx field campaign to aid in GPM validation. The science instruments onboard the aircraft acted as a proxy for GPM satellite instruments. Twenty-one ER-2 flights occurred during May 1, 2014 through June 14, 2014. The dataset consists of navigation data, as well as meteorological parameters collected by an on-board navigation recorder every second of the flight. The data are available in ASCII and XML formats.
GPM GROUND VALIDATION ENVIRONMENT CANADA (EC) PASSIVE MICROWAVE RADIOMETER AND SOIL MOISTURE-TEMPERATURE DATA GCPEX V1
The GPM Ground Validation Environment Canada (EC) Passive Microwave Radiometer and Soil Moisture-Temperature Data GCPEx dataset is consisted of data during the GPM Cold-season Precipitation Experiment (GCPEx) at the Centre for Atmospheric Research Experiments (CARE) site in Ontario, Canada during the winter season 2011-2012. GCPEx addressed shortcomings in the GPM snowfall retrieval algorithm by collecting microphysical properties, associated remote sensing observations, and coordinated model simulations of precipitating snow. Data collected includes microwave brightness temperatures, snow and soil/snow-air interface (ground surface temperatures), soil surface temperatures, and soil volumetric water content. These data were acquired by multiple instruments: a passive microwave radiometer, a water content reflectometer, thermistors, soil moisture probe.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse kidney transcriptomic, proteomic, and epigenomic data
NASA's Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASA's GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment, a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
New Horizons Solar Wind Around Pluto (SWAP) Pick-Up Ions, Validated Summary Data (VS), Daily Data
Solar WInd Pick-Up Ion Plasma Moment Validated Summary (VS) Data from the New Horizons Solar Wind Around Pluto (SWAP) Instrument. Elliott, H.A., D.J. McComas, P. Valek, G. Nicolaou, S. Weidner, and G. Livadiotis (2016), ApJS, 223(2), 1-21, doi:10.3847/0067-0049/223/2/19. McComas, D.J., et al., (2008), The Solar Wind Around Pluto (SWAP) Instrument Aboard New Horizons, Space Sci Rev, 140(1), 261-313, doi:10.1007/s11214-007-9205-3.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse adrenal gland transcriptomic proteomic and epigenomic data
NASA s Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS) it is imperative to use crew time efficiently while maximizing high-quality science return. NASA s GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics systems biology-based approach and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA DNA and protein extracted from archived RR-1 tissue samples for epigenomic transcriptomic and proteomic assays. During the first RR spaceflight experiment a variety of tissue types were harvested from subjects snap-frozen or RNAlater-preserved and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands quadriceps gastrocnemius tibialis anterior extensor digitorum longus soleus eye and kidney. We report here protocols for and results of these tissue extractions and thus the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse liver transcriptomic proteomic and epigenomic data
RR-1 is a validation flight to evaluate the hardware operational and science capabilities of the Rodent Research Project on the ISS. RNA DNA and protein were purified from liver tissues from RR-1 mice (female C57Bl6/J 16wk old at time of launch) including eight from the Flight group and eight from the Ground Control group. From each group two liver samples were collected and frozen immediately after euthanasia (Flight mice dissected on-orbit after total 37 days after launch Samples FLT-M21 M22 and corresponding Ground Control samples GC-M31,M32). An additional six samples from each group were collected from frozen carcasses dissected post-flight (Samples FLT-M25,M26,M27,M28,M29,M30 and corresponding Ground Control samples GC-M35,M36,M37,M38,M39,M40). RNA-Seq whole genome and RNA BS-Seq (bisulfite sequencing) and proteomic expression profiling were performed.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse kidney transcriptomic proteomic and epigenomic data
NASA s Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS) it is imperative to use crew time efficiently while maximizing high-quality science return. NASA s GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics systems biology-based approach and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA DNA and protein extracted from archived RR-1 tissue samples for epigenomic transcriptomic and proteomic assays. During the first RR spaceflight experiment a variety of tissue types were harvested from subjects snap-frozen or RNAlater-preserved and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands quadriceps gastrocnemius tibialis anterior extensor digitorum longus soleus eye and kidney. We report here protocols for and results of these tissue extractions and thus the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse liver transcriptomic, proteomic, epigenomic and histology data
Translating fundamental biological discoveries from NASA Space Biology program into health risk from space flights has been an ongoing challenge. We propose to use NASA GeneLab database to gain new knowledge on potential systemic responses to space. Unbiased systems biology analysis of transcriptomic data from seven different rodent datasets reveals for the first time the existence of potential 'master regulators' coordinating a systemic response to microgravity and/or space radiation with TGF-β1 being the most common regulator. We hypothesized the space environment leads to the release of biomolecules circulating inside the blood stream. Through datamining we identified 13 candidate microRNAs (miRNA) which are common in all studies and directly interact with TGF-β1 that can be potential circulating factors impacting space biology. This study exemplifies the utility of the GeneLab data repository to aid in the process of performing novel hypothesis-based research.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse eye transcriptomic and epigenomic data
NASA's Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASA's GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment, a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
GPM Ground Validation NASA EPFL-LTE Parsivel DSD Data Lausanne, Switzerland V1
The GPM Ground Validation NASA EPFL-LTE Parsivel DSD Data Lausanne, Switzerland dataset consists of a network of 16 Parsivel disdrometers deployed on the Ecole Polytechnique Federale de Lausanne (EPFL) campus in Lausanne, Switzerland for about 16 months from March 2009 to July 2010. The distribution of the disdrometers was to cover a typical operational radar pixel (about 1x1 km2). Since all the stations were not deployed at the same time, additional data are available from November 2008 to September 2010. The dataset also consists of a list of precipitation events that occurred throughout the study period. There are two types of data, raw data and filtered volumic drop size distribution data. These data are in ASCII (.dat, .txt) format that are compressed into .gz files.
New Horizons Solar Wind Around Pluto (SWAP) Pick-Up Ion Histograms, Validated Summary Data (VS), Daily Data
Solar WInd Pick-Up Ion Histogram Validated Summary (VS) Data from the New Horizons Solar Wind Around Pluto (SWAP) Instrument. Elliott, H.A., D.J. McComas, P. Valek, G. Nicolaou, S. Weidner, and G. Livadiotis (2016), ApJS, 223(2), 1-21, doi:10.3847/0067-0049/223/2/19. McComas, D.J., et al., (2008), The Solar Wind Around Pluto (SWAP) Instrument Aboard New Horizons, Space Sci Rev, 140(1), 261-313, doi:10.1007/s11214-007-9205-3. McComas, D.J., Zirnstein, E.J., Bzowski, M., et al., 2017, ApJS, 233, 8. Vasyliunas, V.M., and Siscoe, G.L. 1976, JGR, 81, 1247.
GPM GROUND VALIDATION DC-8 NAVIGATION AND HOUSEKEEPING DATA GCPEX V1
The GPM Ground Validation DC-8 Navigation and Housekeeping Data GCPEx dataset, which is composed of two types of files. GCPEx addressed shortcomings in the GPM snowfall retrieval algorithm by collecting microphysical properties, associated remote sensing observations, and coordinated model simulations of precipitating snow. National Suborbital Education and Research Center (NSERC) of the University of North Dakota (UND) provided geo-located housekeeping data containing attributes, such as altitude, pressure, air speed, and wind speed. The NASA DC-8 Navigation data in comma delimited IWG1 format were collected and utilized in-flight during the GCPEx mission and retrieved from the Real-Time Mission Monitor. Both file types are available for most of the dataset dates, however please note that there are a few dates where only the IWG1 formatted data is available.
SMAP/In Situ Core Validation Site Land Surface Parameters Match-Up Data V001
SMAP radiometer and radar soil moisture data products are matched with in situ-based soil moisture estimates from core validation sites to produce this data set. These data provide performance assessments of various SMAP soil moisture products.
New Horizons Solar Wind Around Pluto (SWAP) Proton Moments, Validated Summary Data (VS), 64 s Data
Solar Wind Plasma Moment Validated Summary (VS) Data from the New Horizons Solar Wind Around Pluto (SWAP) Instrument. References: Elliott, H.A., D.J. McComas, P. Valek, G. Nicolaou, S. Weidner, and G. Livadiotis, New Horizons Solar Wind Around Pluto (SWAP) Observations of the Solar Wind From 11-33 AU, ApJS, 223(2), 1-21, 2016, doi:10.3847/0067-0049/223/2/19.
Rodent Research-1 (RR1) National Lab Validation Flight: Mouse liver transcriptomic, proteomic, epigenomic and histology data
The Rodent Reasearch-1 National Lab (RR-1 CASIS) experiment was performed to study the effect of microgravity on muscle wasting. RNA, DNA, and protein were purified from RR-1 CASIS (the Center for the Advancement of Science in Space) liver samples. Groups included: Flight (FLT) dissected on-orbit (21 or 22 days after launch); age-matched Ground Controls (GC); and Basal Controls (BC, euthanized at time of launch). RNA-Seq, whole genome BS-Seq (bisulfite sequencing) and proteomic expression profiling were performed.
GPM GROUND VALIDATION NASA ER-2 NAVIGATION DATA MC3E V1
The GPM Ground Validation NASA ER-2 Navigation Data MC3E dataset contains information recorded by an on board navigation recorder (NavRec). In addition to typical navigation data (e.g. date, time, lat/lon and altitude) it contains outside meteorological parameters such as wind speed, wind direction, and temperature. These ASCII text files were recorded every second for the length of the flight. The Flight Summaries and Flight Track Imagery dataset which includes sonde maps, radar animation, and 5-minute KICT track snapshots is distributed with this dataset.
GPM Ground Validation Physicum Building Mast Meteorological Data LPVEx V1
The GPM Ground Validation Physicum Building Mast Meteorological Data LPVEx dataset consists of meteorological data (temperature, pressure, wind, precipitation, and radiation) collected from the Station for Measuring Ecosystem-Atmosphere Relations III (SMEAR III) at the University of Helsinki’s Physicum building rooftop weather station in Helsinki, Finland. These data were collected during the Global Precipitation Measurement (GPM) mission Light Precipitation Validation Experiment (LPVEx) field campaign that took place around the Gulf of Finland, aiming to provide additional high-latitude, light rainfall measurements for the improvement of GPM satellite precipitation algorithms. These meteorological data files are available from September 16 through October 22, 2010 in ASCII-CSV and ASCII text formats.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse extensor digitorum longus muscle transcriptomic and epigenomic data
NASA's Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASA's GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment, a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
Rodent Research-1 (RR1) NASA Validation Flight: Mouse quadriceps muscle transcriptomic proteomic and epigenomic data
NASA s Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS) it is imperative to use crew time efficiently while maximizing high-quality science return. NASA s GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics systems biology-based approach and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA DNA and protein extracted from archived RR-1 tissue samples for epigenomic transcriptomic and proteomic assays. During the first RR spaceflight experiment a variety of tissue types were harvested from subjects snap-frozen or RNAlater-preserved and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands quadriceps gastrocnemius tibialis anterior extensor digitorum longus soleus eye and kidney. We report here protocols for and results of these tissue extractions and thus the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.
GPM GROUND VALIDATION NOAA S-BAND PROFILER RAW DATA NETCDF FORMAT MC3E V1
The GPM Ground Validation NOAA S-Band Profiler Raw Data NetCDF Format MC3E dataset was gathered during the Midlatitude Continental Convective Clouds Experiment (MC3E) in Oklahoma April 8, 2011 to June 7, 2011 and consists of uncalibrated Doppler velocity spectra data in units of relative power return. The overarching goal was to provide the most complete characterization of convective cloud systems, precipitation, and the environment that has ever been obtained, providing constraints for model cumulus parameterizations and space-based rainfall retrieval algorithms over land that had never before been available. The S-band 2.8 GHz profiler points vertically and measures the backscattered power from raindrops and ice particles as precipitating cloud systems pass overhead. The profiler processes radar pulses during a 7-second dwell before calculating and saving uncalibrated Doppler velocity spectra at each range gate that were separated by 60-meters vertically. Data collected during each hour are saved in two files. All precipitation mode profiles are saved in one hourly data file and all attenuated mode profiles are saved in another hourly data file. Calibrated data can be obtained from the S-band Original Dwell and Minute datasets.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
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International Brain Laboratory public data
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OpenNeuro
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