Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
6,383
datasets available to search
ShareScore release 0.9.0
Dataset results
6,383 results for “isolates”
Text-fig. 4. Stutzeliastrobus bohemicus (BAYER) J.KVAČEK, Harcov. a – ovuliferous cone showing apical parts of bract-scale complexes, NM-F 4551, scale bar 10 mm, b – shoot with attached ovuliferous cone (Bayer 1914: fig. 21b; 1920: fig. 21b), NM-F 872, scale bar 1 mm, c – SEM of isolated shoot, NM-F 2840, scale bar 0.5 mm, d – LM of abaxial cuticle and hypodermis, NM-F 872b, scale bar 200 µm, e – LM of abaxial cuticle showing two stomatal bands (arrows) and hypodermis, NM-F 872b, scale bar 100 µm, f – LM of abaxial cuticle, detail of e showing stomata (arrows), NM-F 872b, scale bar 50 µm. in Stutzeliastrobus Bohemicus Comb. Nov. - Basal Cupressaceae Conifer From The Cenomanian Of The Bohemian Cretaceous Basin, Central Europe
Text-fig. 4. Stutzeliastrobus bohemicus (BAYER) J.KVAČEK, Harcov. a – ovuliferous cone showing apical parts of bract-scale complexes, NM-F 4551, scale bar 10 mm, b – shoot with attached ovuliferous cone (Bayer 1914: fig. 21b; 1920: fig. 21b), NM-F 872, scale bar 1 mm, c – SEM of isolated shoot, NM-F 2840, scale bar 0.5 mm, d – LM of abaxial cuticle and hypodermis, NM-F 872b, scale bar 200 µm, e – LM of abaxial cuticle showing two stomatal bands (arrows) and hypodermis, NM-F 872b, scale bar 100 µm, f – LM of abaxial cuticle, detail of e showing stomata (arrows), NM-F 872b, scale bar 50 µm.
Text-fig. 3. Stutzeliastrobus bohemicus (BAYER) J.KVAČEK, Harcov. a – surface view of bract-scale complex (arrow) and probably aborted seed, No. NM-F 2746 (lectotype), scale bar 1 mm, b – seed with a wing (arrow) NM-F 872, scale bar 1 mm, c – microCT perpendicular section of bract scale complex showing two seeds with wings (arrows), No. NM-F 2746 (lectotype), scale bar 1 mm, d – microCT longitudinal section of bract scale complex showing three seeds, No. NM-F 2746 (lectotype), scale bar 1 mm, e – microCT longitudinal section of bract scale complex with one seed reconstructed showing micropyle (arrow), No. NM-F 2746 (lectotype), scale bar 1 mm, f – isolated seed with a fragment of wing (arrow), No. NM-F 2746 (lectotype), scale bar 1 mm. in Stutzeliastrobus Bohemicus Comb. Nov. - Basal Cupressaceae Conifer From The Cenomanian Of The Bohemian Cretaceous Basin, Central Europe
Text-fig. 3. Stutzeliastrobus bohemicus (BAYER) J.KVAČEK, Harcov. a – surface view of bract-scale complex (arrow) and probably aborted seed, No. NM-F 2746 (lectotype), scale bar 1 mm, b – seed with a wing (arrow) NM-F 872, scale bar 1 mm, c – microCT perpendicular section of bract scale complex showing two seeds with wings (arrows), No. NM-F 2746 (lectotype), scale bar 1 mm, d – microCT longitudinal section of bract scale complex showing three seeds, No. NM-F 2746 (lectotype), scale bar 1 mm, e – microCT longitudinal section of bract scale complex with one seed reconstructed showing micropyle (arrow), No. NM-F 2746 (lectotype), scale bar 1 mm, f – isolated seed with a fragment of wing (arrow), No. NM-F 2746 (lectotype), scale bar 1 mm.
Single-nucleotide polymorphisms in isolates Pyricularia oryzae isolates from rice and other hosts
<p>We investigated the presence of inter-lineage hybrids in a set of 886 isolates of the rice-infecting lineage of the rice blast fungus (<em>Pyricularia oryzae</em>).</p> <p>More details in https://doi.org/10.1101/2020.06.02.129296</p> <p>List of files:</p> <p>concatenation_5190SCOs_179isolates.fasta.gz: concatenated sequences of 5190 single copy orthologs from 179 isolates (used in Figures A and B, and computations of polymorphism and divergence in Appendix 1).</p> <p>concatenation_3686SNPs_415isolates.fasta.gz: concatenated polymorphisms identified in 415 isolates at 3686 genomic positions (used in Figure C, Appendix 1).</p> <p>concatenation_503889SNPs_96isolates.fasta.gz: concatenated polymorphisms identified in 96 isolates at 503889 genomic positions (used in Figures D and E, Appendix 1).</p> <p>orthology_table_with_70-15_genemodels.txt: Orthology table, with one orthogroup per line, one species per column, 16445 orthogroups, 179 isolates. The MGG column represents gene models from the 70-15 reference genome MG8, determined subsequently to orthology analysis by blastx of 70-15 sequences against isolate VT0027, which was the closest isolate in a neighbor-net network.</p>
Rapid identification of MRSA using mass spectrometry and machine learning from over 20000 clinical isolates
<p>Rapidly identifying methicillin-resistant Staphylococcus aureus (MRSA) with high integration in the current workflow is critical in clinical practices. We proposed a MALDI-TOF MS based machine learning model for rapidly MRSA prediction, the model was evaluated on a prospective test and four external clinical sites. On the dataset comprising 20359 clinical isolates, the area under the receiver operating curve of the classification model was 0.78–0.88. Our MALDI–TOF MS-based ML model for the rapid MRSA identification can be easily integrated into the current clinical workflows and can further support physicians prescribe proper antibiotic treatments. </p>
Data From: Forabot: Automated Planktic Foraminifera Isolation and Imaging
<p>Physical inspection and sorting of foraminifera is a necessity in many research labs, as foraminifera serve as paleoenvironmental and chronostratigraphic indicators.</p> <p>In order to gain counts of species from samples, analyze chemical compositions, or extract morphological properties of foraminifera, research labs require human effort and time handling and sorting these microscopic fossils.</p> <p>The presented information supports Forabot, an open-source system that can physically manipulate individual foraminifera for imaging and isolation with minimal human interaction.</p> <p>The associated data, codebase, and documentation support building a Forabot and confirming results related to processing raw image data, error detection results, and proof of concept deep classification network.</p>
Text-fig. 11. Scanning electron microscope (SEM) images of isolated "Stamen fragment with Clavatipollenites-type pollen sp. 2"; Catefica locality, Portugal. a) Fragment of tetrasporangiate stamen with pollen in situ; b) Detail from stamen fragment showing distal and proximal surfaces of in situ pollen grains; c) Pollen grain in distal view showing short colpus with irregular margin and aperture membrane covered by irregular verrucae; d) Detail of pollen wall showing tiny spherical orbicules; e) Detail of pollen wall showing the semitectate-reticulate tectum and long, scattered columellae supporting the narrow muri with finely verrucate supratectal ornamentation. Specimen, Catefica 50-S170389 (a–e). Scale bars = 600 Μm (a), 20 Μm (b), 6 Μm (c), 3 Μm (d), 1.5 Μm (e). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 11. Scanning electron microscope (SEM) images of isolated "Stamen fragment with Clavatipollenites-type pollen sp. 2"; Catefica locality, Portugal. a) Fragment of tetrasporangiate stamen with pollen in situ; b) Detail from stamen fragment showing distal and proximal surfaces of in situ pollen grains; c) Pollen grain in distal view showing short colpus with irregular margin and aperture membrane covered by irregular verrucae; d) Detail of pollen wall showing tiny spherical orbicules; e) Detail of pollen wall showing the semitectate-reticulate tectum and long, scattered columellae supporting the narrow muri with finely verrucate supratectal ornamentation. Specimen, Catefica 50-S170389 (a–e). Scale bars = 600 Μm (a), 20 Μm (b), 6 Μm (c), 3 Μm (d), 1.5 Μm (e).
Text-fig. 12. Scanning electron microscope (SEM) images of isolated "Stamen fragment with Clavatipollenites-type pollen sp. 3"; Catefica locality, Portugal. a) Stamen fragment with pollen in situ; b, c) Pollen grains showing the semitectate-reticulate pollen wall and folds (c) indicating a possible monocolpate aperture; d) Detail of pollen wall showing the semitectate-reticulate tectum and long, scattered columellae supporting the narrow muri with finely verrucate supratectal ornamentation; e) Detail of pollen wall showing tiny, spherical, finely spiny orbicules. Specimen, Catefica 50-S170449 (a–e). Scale bars = 600 Μm (a), 6 Μm (b, c), 1.5 Μm (d, e). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 12. Scanning electron microscope (SEM) images of isolated "Stamen fragment with Clavatipollenites-type pollen sp. 3"; Catefica locality, Portugal. a) Stamen fragment with pollen in situ; b, c) Pollen grains showing the semitectate-reticulate pollen wall and folds (c) indicating a possible monocolpate aperture; d) Detail of pollen wall showing the semitectate-reticulate tectum and long, scattered columellae supporting the narrow muri with finely verrucate supratectal ornamentation; e) Detail of pollen wall showing tiny, spherical, finely spiny orbicules. Specimen, Catefica 50-S170449 (a–e). Scale bars = 600 Μm (a), 6 Μm (b, c), 1.5 Μm (d, e).
Text-fig. 10. Scanning electron microscope (SEM) images of isolated "Stamen fragment with Clavatipollenites-type pollen sp. 1"; Catefica locality, Portugal. a) Fragment of tetrasporangiate stamen with pollen in situ; b) Detail from stamen fragment showing distal and proximal surfaces of in situ pollen grains and tiny orbicules on the inner surface of the anther wall (arrows); c) Pollen grains in distal view showing short colpi with irregular margins and aperture membrane with irregular verrucae; d) Detail of pollen wall showing the semitectate-reticulate tectum and long, scattered columellae supporting the narrow muri with finely verrucate supratectal ornamentation. Specimen, Catefica 50-S170387 (a–d). Scale bars = 600 Μm (a), 20 Μm (b), 6 Μm (c), 1.5 Μm (d). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 10. Scanning electron microscope (SEM) images of isolated "Stamen fragment with Clavatipollenites-type pollen sp. 1"; Catefica locality, Portugal. a) Fragment of tetrasporangiate stamen with pollen in situ; b) Detail from stamen fragment showing distal and proximal surfaces of in situ pollen grains and tiny orbicules on the inner surface of the anther wall (arrows); c) Pollen grains in distal view showing short colpi with irregular margins and aperture membrane with irregular verrucae; d) Detail of pollen wall showing the semitectate-reticulate tectum and long, scattered columellae supporting the narrow muri with finely verrucate supratectal ornamentation. Specimen, Catefica 50-S170387 (a–d). Scale bars = 600 Μm (a), 20 Μm (b), 6 Μm (c), 1.5 Μm (d).
Text-fig. 2. Scanning electron microscope (SEM, a, c–f) and synchrotron radiation X-ray tomographic microscopy (SRXTM, b, g) images of the flower of Mugideiriflora portugallica (a, b) and fruits, seeds and pollen of Canrightia resinifera (c–g); Catefica locality, Portugal. a) Oblique, apical view of flower showing multiparted organization with numerous laminar tepals, stamens that are rhomboidal and flattened in transverse section and carpels that are borne on the short conical apex of the receptacle; b) Transverse section (orthoslice xy0800) through basal part of flower showing the elongate bases of the laminar tepals and the flattened rhomboidal bases of the stamens; c) Fruit in lateral view showing irregular surface resulting from the abundant resin bodies in the fruit and hypanthium wall, scars from stamens on the rim of the hypanthium (arrowheads) and the lobed apical stigmatic region (st); d) Broken fruit with one or two seeds missing but showing three pendant, orthotropous seeds with pointed micropylar regions (mi) and a finely pitted crystalliferous endotesta; note the remains of the apical vascular bundles (vb); e) Single seed isolated from a fruit showing two distinct bundles (vb) still attached apically to the chalazal region of the seed, the pointed micropyle (mi) and the finely pitted surface of the crystalliferous endotesta; f) Monocolpate pollen from stigmatic region of fruit showing the long colpus and coarse reticulum; g) Transverse section (orthoslice xy0705) through a fruit showing four seeds all with radially elongated endothelium cells formed from the inner epidermis of the tegmen (asterisks). Specimens, Catefica 150-S174254 (a, b), Catefica 49-S170377 (c), Catefica 49-S170372 (d), Catefica 50-S170401 (e), Catefica 50-S170404 (f), Catefica 50-S174906 (g). Scale bars = 300 Μm (a–e, g), 6 Μm (f). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 2. Scanning electron microscope (SEM, a, c–f) and synchrotron radiation X-ray tomographic microscopy (SRXTM, b, g) images of the flower of Mugideiriflora portugallica (a, b) and fruits, seeds and pollen of Canrightia resinifera (c–g); Catefica locality, Portugal. a) Oblique, apical view of flower showing multiparted organization with numerous laminar tepals, stamens that are rhomboidal and flattened in transverse section and carpels that are borne on the short conical apex of the receptacle; b) Transverse section (orthoslice xy0800) through basal part of flower showing the elongate bases of the laminar tepals and the flattened rhomboidal bases of the stamens; c) Fruit in lateral view showing irregular surface resulting from the abundant resin bodies in the fruit and hypanthium wall, scars from stamens on the rim of the hypanthium (arrowheads) and the lobed apical stigmatic region (st); d) Broken fruit with one or two seeds missing but showing three pendant, orthotropous seeds with pointed micropylar regions (mi) and a finely pitted crystalliferous endotesta; note the remains of the apical vascular bundles (vb); e) Single seed isolated from a fruit showing two distinct bundles (vb) still attached apically to the chalazal region of the seed, the pointed micropyle (mi) and the finely pitted surface of the crystalliferous endotesta; f) Monocolpate pollen from stigmatic region of fruit showing the long colpus and coarse reticulum; g) Transverse section (orthoslice xy0705) through a fruit showing four seeds all with radially elongated endothelium cells formed from the inner epidermis of the tegmen (asterisks). Specimens, Catefica 150-S174254 (a, b), Catefica 49-S170377 (c), Catefica 49-S170372 (d), Catefica 50-S170401 (e), Catefica 50-S170404 (f), Catefica 50-S174906 (g). Scale bars = 300 Μm (a–e, g), 6 Μm (f).
Text-fig. 20. Synchrotron radiation X-ray tomographic microscopy (SRXTM, a) and scanning electron microscope (SEM, b–h) images of fruits of Appomattoxia sp. (a–d) and anther and pollen of Goczania rugosa (e–h); Catefica locality, Portugal. a) Surface rendering of fruit in lateral view showing densely spaced hairs, some with delicate coiled tips; b) Fruit in lateral view showing short, densely spaced hairs and apical stigmatic region; c, d) Detail of fruit surface and hairs from fruit in (b); e) Fragmentary anther showing four pollen sacs; f) Proximal view of pollen grains from an abraded anther showing microechinate surface of pollen wall and clusters of small, spiny orbicules; g, h) Proximal (g) and distal (h) views of pollen grains from an isolated pollen sac, showing short colpus (h), tectate pollen wall and microechinate surface ornamentation. Specimens, Catefica 49-S174913 (a), Catefica 49-S107794 (b–d), Catefica 50-S170391 (e), Catefica 49-S170138 (f), Catefica 49-S170143 (g, h). Scale bars = 300 Μm (a, b, e), 100 Μm (c), 50 Μm (d), 6 Μm (f–h). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 20. Synchrotron radiation X-ray tomographic microscopy (SRXTM, a) and scanning electron microscope (SEM, b–h) images of fruits of Appomattoxia sp. (a–d) and anther and pollen of Goczania rugosa (e–h); Catefica locality, Portugal. a) Surface rendering of fruit in lateral view showing densely spaced hairs, some with delicate coiled tips; b) Fruit in lateral view showing short, densely spaced hairs and apical stigmatic region; c, d) Detail of fruit surface and hairs from fruit in (b); e) Fragmentary anther showing four pollen sacs; f) Proximal view of pollen grains from an abraded anther showing microechinate surface of pollen wall and clusters of small, spiny orbicules; g, h) Proximal (g) and distal (h) views of pollen grains from an isolated pollen sac, showing short colpus (h), tectate pollen wall and microechinate surface ornamentation. Specimens, Catefica 49-S174913 (a), Catefica 49-S107794 (b–d), Catefica 50-S170391 (e), Catefica 49-S170138 (f), Catefica 49-S170143 (g, h). Scale bars = 300 Μm (a, b, e), 100 Μm (c), 50 Μm (d), 6 Μm (f–h).
Differences in mating system and predicted parental conflict affect post-pollination reproductive isolation in a flowering plant
<p>Mating system shifts from outcrossing to selfing are frequent in plant evolution. Relative to outcrossing, selfing is associated with reduced parental conflict over seed provisioning, which may result in postzygotic, asymmetric, reproductive isolation in crosses between populations of different mating systems. To test the hypothesis that post-pollination reproductive isolation between populations increases with increasing differences in mating system and predicted parental conflict, we performed a crossing experiment involving all combinations of three self-compatible populations (with low outcrossing rates), and three self-incompatible populations (with high outcrossing rates) of the arctic-alpine herb Arabis alpina, assessing fitness-related seed and plant traits of the progeny. Predicted levels of parental conflict ("genome strength") were quantified based on strength of self-incompatibility and estimates of outcrossing rates. Crosses between self-compatible and self-incompatible populations yielded very small seeds of low viability, resulting in strong reproductive isolation. In 14 of 15 reciprocal between-population crosses, seeds were heavier when the paternal plant had the stronger genome, and seed mass differences between cross directions increased with an increased difference in parental conflict. Overall, our results suggest that, when sufficiently large, differences in mating system and hence in expected parental conflict may result in strong post-pollination reproductive barriers contributing to speciation.</p>
Fig. 26 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 26. Species illustrated for comparative purposes: (A–C) Tropidophora moulinsii, holotype of Cyclostoma moulinsii Grateloup, 1840, 'Madagascar', max. diameter 33.1 mm, NHMUK 1907.11.22.12; (D–F) Tropidophora thesauri Fischer-Piette, 1949, Orangea, Diego Suarez [= Antsiranana] district, max. diameter 38.0 mm, NMSA L8438; (G–I) Tropidophora reticulata, one of three syntypes of Cyclostoma reticulatum (Adams & Reeve, 1850), 'Madagascar', max. diameter 15.1 mm, NHMUK 1874.12.11.231; (J–L) Kalidos hova, syntype of Nanina hova Odhner, 1919, Catsèpe, Madagascar, max. diameter 24.4 mm (SMNH).
Fig. 23 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 23. Kalidos maryannae sp. n.: (A–C) holotype, max. diameter 27.3 mm, height 17.7 mm, AMS C.474168; (D–J) paratypes, NMSA L8470/T2904: (D) specimen with bands of intermediate strength, max. diameter 29.3 mm; (E) specimen with broad brown bands and low spire, max. diameter 27.0 mm; (F) specimen spire of intermediate height, max. diameter 28.3 mm; (G, H) fresh subadult with unfaded colour pattern, max. diameter 24.8 mm; (I) large specimen with additional ⅛ whorl of growth, max. diameter 29.3 mm; (J) juvenile showing angular periphery, max. diameter 15.2 mm; (K) holotype, portion of last adult whorl showing sculpture of growth-lines and spiral threads.
Fig. 20 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 20. Ampelita namerokoensis Fischer-Piette, 1952, genitalia, NMSA L8442: (A) entire reproductive tract; (B) external view of penial complex; (C) penis opened longitudinally to show internal folds and raised papilla at insertion of epiphallus. Abbreviations: ag – albumen gland, bc – bursa copulatrix, bcd – bursa copulatrix duct, ep – epiphallus, ga – genital atrium, hd – hermaphrodite duct, od – oviduct, p – penis, pf – folds lining penis lumen, pp – penis papilla, pr – prostate, prm – penial retractor muscle, v – vagina, vd – vas deferens.
Fig. 18 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 18. Ampelita milloti Fischer-Piette, 1952, Tsingy Beanka, st'n 16/06, max. diameter 24.8 mm, NMSA L7127.
Fig. 17 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 17. Ampelita beanka sp. n., A. milloti Fischer-Piette, 1952 and A. namerokoensis Fischer-Piette, 1952, protoconch morphology and teleoconch microsculpture: (A, B) A. beanka, protoconch diameter 4.1 mm, st'n R04/09, respectively paratype, NMSA L8504/T2983, and holotype, AMS C.474166; (C, D) A. milloti, protoconch diameter 4.4 mm, both st'n 07/09, NMSA L8502; (E, F) A. namerokoensis, protoconch diameter 3.5 mm, respectively st'n 18/06, NMSA L8439, and st'n 03/06, NMSA L7038.
Fig. 15 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 15. Ampelita beanka sp. n.: (A–C) holotype, max. diameter 17.7 mm, height 8.0 mm, AMS C.474166; (D) specimen with less strongly shouldered whorls, max. diameter 19.1 mm, st'n 07/09, paratype, NMSA L8501/T2981; (E–F) specimens of the same size and collected from the same station R01/09, showing the differing extent to which the suture descends below the shoulder, max. diameter 17.1 mm, paratypes, NMSA L8507/T2982.
Fig. 14 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 14. Ampelita lindae sp. n.: (A–C) holotype, max. diameter 30.5 mm, height 12.6 mm, AMS C.474167; (D) holotype, microsculpture one quarter whorl prior to outer lip, scale bar = 2.5 mm; (E–G) paratype, max. diameter 29.0 mm, height 12.0 mm, NMSA L8468/T2903.
Fig. 13 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 13. Ampelita decaryi Fischer-Piette, 1952: (A–C) typical specimen, max. diameter 40.7 mm; (D–F) specimens showing variation in shell proportions and in relative width of supra-peripheral spiral bands [max. diameter: D, 39.4 mm; E, 38.0 mm; F, 40.9 mm]; (G) subfossil, max. diameter 43.0 mm. (A–F) Antsingimavo, st'n 04/06, NMSA L7090; (G) Kasijy Forest, Kelifely Plateau, st'n 08/05, NMSA L7010.
Fig. 22. Kalidos griffithshauchleri Emberton, 2002 in New species of land snails (Mollusca: Gastropoda) from two isolated karst formations in central western Madagascar: Tsingy Beanka and Antsingimavo, with additional notes on other regional endemics
Fig. 22. Kalidos griffithshauchleri Emberton, 2002, genitalia, NMSA L7191: (A) lower portion of reproductive tract – gonad, albumen gland and bursa copulatrix missing; (B) upper part of penis, opened longitudinally to show well-developed penial verge extending from epiphallus. Abbreviations: bcd – bursa copulatrix duct, ep – epiphallus, f – flagellum, ga – genital atrium, p – penis, ps – penis sheath, pv – penial verge, prm – penial retractor muscle, sod – sperm-oviduct, v – vagina, vb – boss on penial verge, vc – cleft in penial verge, vd – vas deferens.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.