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FIGURE 4. a in Characterization of a secondary contact zone of the Great Tit Parus major and the Japanese Tit P. minor (Aves: Passeriformes) in Far Eastern Siberia with DNA markers.
FIGURE 4. a) Proportion of minor phenotypes plotted against geographic distances between the populations (with parameters, a = 1.0166, b = 0.1534, x = 5.7334, y = 0.0114, R2 = 0.9934), b) 0 0 proportion of minor mitochondrial haplotypes plotted against geographic distances (a = 1.0049, b = 0.1551, x = 0.5749, y = 0.0319, R2 = 0.9843) and c) proportion of individuals being assigned to 0 0 minor based on microsatellites plotted against geographic distances (a = 0.9616, b = 0.2167, x0 = 5.2785, y = 0.0166, R2 = 0.9928).
FIGURE 3 in Characterization of a secondary contact zone of the Great Tit Parus major and the Japanese Tit P. minor (Aves: Passeriformes) in Far Eastern Siberia with DNA markers.
FIGURE 3. Assignment probabilities for each individual to belong to major or minor cluster. Phenotypes of the individuals are shown above the graph. Individuals in bold are first generation migrants detected by GeneClass.
FIGURE 2 in Characterization of a secondary contact zone of the Great Tit Parus major and the Japanese Tit P. minor (Aves: Passeriformes) in Far Eastern Siberia with DNA markers.
FIGURE 2. Relative frequencies of alleles at the nine studied microsatellite loci for each population.
Form and Function of Polysemic Reflexive Markers in German, with Special Regard to Central Bavarian Varieties
<p>This upload includes the data, its analysis and the related questionnaire on the use of reflexive an reciprocal forms in central Bavarian varieties. The questionnaire (n=218) was part of a study that aimed at examining the actual use of reflexive and reciprocal markers in central Bavarian varieties as well as in Standard German.</p>
Slate way marker
Carved slate sign with an acorn and an arrow. Rocky ground. Long shadows. St Gothian Sands, Cornwall. National Trust. 📍 [Gwithian, Hayle, England](https://scaniver.se/L50.22694,-5.38942) Source: Objaverse 1.0 / Sketchfab
Fig. 5 in Corosolic acid content and SSR markers in Lagerstroemia speciosa (L.) Pers.: A comparative analysis among populations across the Southern Western Ghats of India
Fig. 5. Variation in percentage distribution of CRA (a) in different parts of L. speciosa (b) in all 12 populations of L. speciosa collected across a north–south geographical gradient in the Southern Western Ghats region of peninsular India.
Fig. 3 in Corosolic acid content and SSR markers in Lagerstroemia speciosa (L.) Pers.: A comparative analysis among populations across the Southern Western Ghats of India
Fig. 3. Principal Component Analysis performed on (a) SSR data obtained from 12 natural populations of L. speciosa (b) estimate of corosolic acid content across these populations. The percentage of variance explained by each axis is indicated in parenthesis.
Fig. 2 in Corosolic acid content and SSR markers in Lagerstroemia speciosa (L.) Pers.: A comparative analysis among populations across the Southern Western Ghats of India
Fig. 2. UPGMA cluster analysis of SSR data for 12 wild populations of L. speciosa across the Southern Western Ghats depicting pattern of grouping among populations.
Fig. 6 in Corosolic acid content and SSR markers in Lagerstroemia speciosa (L.) Pers.: A comparative analysis among populations across the Southern Western Ghats of India
Fig. 6. Map showing geographical location of collection sites of all 12 populations of L. speciosa in the Southern Western Ghats.
CHARACTERISTIC MARKERS OF PTSD DIAGNOSTIC BY DRAWING IN YOUNG SCHOOL AND JUNIOR AGE
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CD127 as a Novel Potential Marker for Clearance in Chronic Hepatitis C Virus Patients
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Scripts and data for the manuscript "Transcriptomic profiling of gill biopsies to define predictive markers for seawater survival in farmed Atlantic salmon"
<p>This dataset supports the manuscript titled "Transcriptomic profiling of gill biopsies to define predictive markers for seawater survival in farmed Atlantic salmon." It contains comprehensive RNA-seq count data from gill biopsies of approximately 3000 Atlantic salmon smolt, collected during the SynchroSmolt project. The data is supplemented with RNA-seq counts from two prior photoperiod smolt experiments (2013_shortdays and 2017_winterlength) and single-nucleus RNA-seq (snRNA-seq) data from an additional experiment.</p> <p><strong>Key Dataset Elements:</strong><br>- <strong>RNA-seq read counts and metadata</strong> for three experiments, detailing various growth, condition, and survival indicators.<br>- <strong>Scripts for analysis</strong> include differential expression analysis, random forest model preparation and execution, and cell-type-specific gene analysis.<br>- <strong>Intermediate data outputs</strong> such as normalized RNA-seq counts, results from differential expression analyses, and random forest model inputs and outputs.</p> <p><br>This dataset facilitates the exploration of gene expression-based predictive modeling for seawater survival, revealing key insights into the influence of photoperiod history and developmental gene regulation on Atlantic salmon's transition to seawater.</p>
Inter-Chemical Correlation results for the study: HHEARx2018-2273 (First Trimester Exposures: Influence on Birth Outcomes and Markers of Biological Response)
Title: First Trimester Exposures: Influence on Birth Outcomes and Markers of Biological Response <br>Species: Homo sapiens <br>Number of samples: 356 <br>Number of named analytes: 59 <br>Datasource url: https://hheardatacenter.mssm.edu/PublicFile/ViewPublicFile?projectid=59 <br>
Colorectal cancer patients-derived immunity-organoid platform unveils cancer-specific tissue markers associated with immunotherapy resistance.
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Therapeutic Potential of Nigella sativa Extract against Inflammatory Markers Interleukin-1ß (IL-1ß) and Tumor Necrosis Factor-α (TNF-α) in Rat Models with High Fat Diet
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Systematic Identification of Needlefish (Belonidae) Species using Molecular Genetic and Morphological Markers in the Mediterranean and Black Seas
<p><span>In this study, we aimed to clarify the taxonomic status of Belonidae species distributed in the Mediterranean Sea and the Black Sea by conducting detailed genetic and morphological markers. A total of 550 needlefish samples were caught between January 2022 and January 2024.<span> </span>The data set used in the study contains a total of 171 sequences for the <em>COI</em> gene and 120 sequences for the <em>12s rRNA</em> gene from different Belonidae species, including data from GenBank. Systematic analysis of needlefish species was investigated by using sequencing of mtDNA <em>COI</em> and <em>12s rRNA</em> gene regions and morphological characters in the Turkish Marine Waters. A separate analysis of the two mitochondrial genes supported by morphological characters revealed that each species is grouped within itself. The genetic and morphological analyses showed that <em>Belone belone acus</em> and <em>Belone belone euxini</em> which are considered as the subspecies of <em>Belone belone</em> are not subspecies of the genus <em>Belone</em> and should be considered at the species level, <em>Belone belone</em>.<span> </span><em>Belone svetovidovi</em> is also considerably different from <em>Belone belone</em> and should be considered as a different species. <em>T. acus imperialis</em>, which is thought to be distributed in the Mediterranean Sea, is not a subspecies of <em>Tylosorus acus and should be revised as Tylosorus imperialis </em><span>which genetically </span>differs from<em> Tylosorus acus </em>and also other<em> Tylosorus </em><span>species</span><em> </em>at the species level<em>. </em></span></p>
Data from: Microsaccades as a marker not a cause for attention-related modulation
<p>Recent evidence suggests that microsaccades are causally linked to the attention-related modulation of neurons – specifically, that microsaccades towards the attended location are required for the subsequent changes in firing rate. These findings have raised questions about whether attention-related modulation is due to different states of attention as traditionally assumed or might instead be a secondary effect of microsaccades. Here, in two rhesus macaques, we tested the relationship between microsaccades and attention-related modulation in the superior colliculus, a brain structure crucial for allocating attention. We found that attention-related modulation emerged even in the absence of microsaccades, was already present prior to microsaccades towards the cued stimulus, and persisted through the suppression of activity that accompanied all microsaccades. Nonetheless, consistent with previous findings, we also found significant attention-related modulation when microsaccades were directed towards, rather than away from, the cued location. Thus, in contrast to the prevailing hypothesis, microsaccades are not necessary for attention-related modulation, at least not in the superior colliculus. They do, however, provide an additional marker for the state of attention, especially at times when attention is shifting from one location to another.</p>
Data for 'Membrane marker selection for segmenting single cell spatial proteomics data'
<p>Additional data for 'Membrane marker selection for segmenting single cell spatial proteomics data'</p>
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome. in Adiantum japonicum, a new species of the Adiantum pedatum complex (Pteridaceae) from Japan
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome.
Isolation and characterization of twelve polymorphic microsatellite markers in the endangered Hopea hainanensis (Dipterocarpaceae)
<p>Using next-generation sequencing technology, 26 microsatellite markers were developed and genotyped by capillary electrophoresis for <i>Hopea</i> <i>hainanensis</i> Merrill & Chun, an endangered tree species in Hainan Island and northern Vietnam. Twelve markers were found to be polymorphic in this species. Primer transferability was tested with <i>H</i>. <i>chinensis</i> Hand.-Mazz. and <i>H</i>.<i> reticulata</i> Tardieu, in which 3 and 7 microsatellite markers were found to be polymorphic, separately. The 12 polymorphic microsatellite markers could be applied to population genetic studies aimed at <i>H</i>. <i>hainanensis</i> as well as its close relatives, facilitating the conservation and restoration of these endangered but valuable <i>Hopea</i> species.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.