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3,259 results for “type studies”
FIGURES 22–24. 22 in Studies on type material from Kützing's diatom collection VI:The identity of Diatoma liber Suhr (1831)
FIGURES 22–24. 22. Reproduction of Kützing's drawing of Biddulphia trilocularis (Kützing 1844, p. 138, pl. 29, fig. 89), possibly a reproduction or re-drawing of Ehrenberg's Denticella biddulphia (compare with Figs 23 and 24). 23, 24. Reproduction of Ehrenberg's Denticella biddulphia (Ehrenberg 1843, Taf. II, vi, fig. 19, 'Cuba', Fig. 23 = published drawing, Fig. 24 = unpublished drawing; none of the original illustrations have scales, the reproductions here are approximately the same size as that in the original)
FIGURE 5 in Type studies on two Paxillus species (Paxillaceae, Boletales) described from China
FIGURE 5. Microscopic features of Tricholompsis yunnanensis (KUN-HKAS 93555). a. Basidiospores; b. Basidia; c. Cheilocystidia; d. Pleurocystidia; e. Pileipellis. Scale bars = 10 μm. Drawings by: Li-Rong Liu.
FIGURE 3 in Type studies on two Paxillus species (Paxillaceae, Boletales) described from China
FIGURE 3. Photos of the collections. a-c. Boletinellus rhytidophyllus (KUN-HKAS 113221, photos by Liu-Kun Jia); d-f. Tricholomopsis yunnanensis (d. KUN-HKAS 80034, photo by Zhu L. Yang; e. KUN-HKAS 48887, photo by Jun-Feng Liang; f. KUN-HKAS 93555, photo by Rui Zhang).
FIGURE 4 in Type studies on two Paxillus species (Paxillaceae, Boletales) described from China
FIGURE 4. Microscopic features of B. rhytidophyllus (KUN-HKAS 113221). a. Basidiospores; b. Basidia and pleurocystidium; c. Cheilocystidia; d. Pleurocystidia; e. Pileipellis. Scale bars = 10 μm. Drawings by: Li-Rong Liu.
FIGURE 2. Maximum likelihood phylogenetic tree generated from a in Type studies on two Paxillus species (Paxillaceae, Boletales) described from China
FIGURE 2. Maximum likelihood phylogenetic tree generated from a three-locus (nrLSU, ITS, and tef1-α) dataset of the Tricholomopsis species. ML bootstrap (BS>50%) are shown above the branches. Voucher specimens and localities where the specimens were collected are provided. The new combination is in bold.
FIGURE 1. Maximum likelihood phylogenetic tree generated from a in Type studies on two Paxillus species (Paxillaceae, Boletales) described from China
FIGURE 1. Maximum likelihood phylogenetic tree generated from a three-locus (nrLSU, ITS, and tef1-α) dataset of the Boletinellus species. ML bootstrap (BS>50 %) are indicated above the branches. Voucher specimens and localities where the specimens were collected are provided. The new combination is in bold.
Allele-specific chromatin accessibility for 23 cancer types and weight files for Regulome Wide Association-Studies (RWAS)
<p><strong>stratAS_results.tar.gz</strong></p> <p>This folder contains the results of analyses of allele-specific chromatin accessibility for 23 cancer types + pan-cancer using the stratAS software. The analyses identified allelically imbalanced genomic regions from 406 cancer ATAC-Seq samples. The files are named after each cancer type (or “pancancer” for the pan-cancer analysis) and contain the following columns:</p> <p>CHR - Chromosome<br> POS - Position of test<br> SNP RSID - ID of test SNP<br> P0 - Start of gene/peak<br> P1 - End of gene/peak<br> NAME - Name of gene/peak<br> CENTER - Center position of peak (or TSS for gene)<br> N.HET - Number of heterozygous individuals tested N.READS - Number of reads tested in total<br> ALL.AF - Allelic fraction estimate from beta binomial test across both conditions<br> ALL.BBINOM.P - Beta-binomial test for imbalance across both conditions<br> C0.AF - Allelic fraction estimate from condition 0<br> C0.BBINOM.P - Beta-binomial test for imbalance in condition 0<br> C1.AF - Allelic fraction estimate from condition 1<br> C1.BBINOM.P - Beta-binomial test for imbalance in condition 1<br> DIFF.BBINOM.P - Beta-binomial test for difference between conditions<br> IND.C0 - Number of each condition 0 individual included in this test (comma separated)<br> IND.C0.COUNT.REF - condition 0 REF allele counts of each individual included in this test (comma separated)<br> IND.C0.COUNT.ALT - condition 0 ALT allele counts of each individual included in this test (comma separated)<br> IND.C1 - Number of each condition 1 individual included in this test (comma separated)<br> IND.C1.COUNT.REF - condition 1 REF allele counts of each individual included in this test (comma separated)<br> IND.C1.COUNT.ALT - condition 1 ALT allele counts of each individual included in this test (comma separated)</p> <p>In our analysis, samples that belong to a cancer type that is analyzed for allelic imbalance are assigned to Condition 1 (C1) while samples belonging to the remaining 22 cancer types are assigned to Condition 0 (C0). For the pan-cancer analysis, samples from all 23 cancer types are assigned to C1. P-values denoting the significance of allelic imbalance in a given cancer type (or pan-cancer analysis) are listed in the column C1.BBINOM.P. P-values denoting the significance of differential allelic imbalance between a given cancer type and the remaining 22 cancer types are listed in column DIFF.BBINOM.P (set to NA for pan-cancer analysis since all samples are assigned to C1).</p> <p>More information about stratAS and its output format can be found at https://github.com/gusevlab/stratAS.</p> <p>The conducted analyses are described in detail in the methods section of Grishin D. and Gusev A. Allelic imbalance of chromatin accessibility in cancer identifies candidate causal risk variants and their mechanisms (2022).</p> <p><strong>RWAS_weights.tar.gz</strong></p> <p>This folder contains weight files that can be used together with GWAS summary statistics to conduct Regulome Wide Association-Studies (RWAS) using the FUSION software package.</p> <p>Each weight file corresponds to a single accessible element in the FUSION format. Instructions on how to use FUSION for RWAS can be found at http://gusevlab.org/projects/fusion/. RWAS is conducted in the same manner as TWAS using these RWAS weights.</p> <p>The weight files were generated using a pan-cancer peak set. A BED file containing pan-cancer peaks can be found in the peaks_hg19 folder along with other BED files containing cancer-type specific peaks. Cancer-type specific peak files can be used to restrict the RWAS analysis to regulatory elements active in specific cancer types.</p> <p>The conducted analyses are described in detail in the methods section of Grishin D. and Gusev A. Allelic imbalance of chromatin accessibility in cancer identifies candidate causal risk variants and their mechanisms (2022).</p>
FIGURE. Sanicula orthacantha in the wild (China, Chongqing, Nanchuan, Jinfo Shan, the type locality of S. nanchuanensis). A. Habitat. B. Habit. C. Leaves (left: adaxial surface; right: abaxial surface). D. Portion of inflorescence (side view). E. Portion of inflorescence (top view). F. Involucrate bracts. G. Umbellule (side view), a) involucellate bracteoles, b) calyx teeth. H. Staminate flowers (side view). I. Fertile flower with fruit. J. Mericarps. in Taxonomic studies on the genus Sanicula (Apiaceae) from China ( ): The clarification of some morphological distinction between S. orthacantha var. orthacantha and S. orthacantha var. brevispina, with the reduction of S. petagnioides to the synonymy of the former, and S. orthacantha var. stolonifera to
FIGURE. Sanicula orthacantha in the wild (China, Chongqing, Nanchuan, Jinfo Shan, the type locality of S. nanchuanensis). A. Habitat. B. Habit. C. Leaves (left: adaxial surface; right: abaxial surface). D. Portion of inflorescence (side view). E. Portion of inflorescence (top view). F. Involucrate bracts. G. Umbellule (side view), a) involucellate bracteoles, b) calyx teeth. H. Staminate flowers (side view). I. Fertile flower with fruit. J. Mericarps.
FIGURE. Sanicula orthacantha in the wild (China, Jiangxi, Jiujiang, Lushan, the type locality of S. orthacantha). A. Habitat. B. Habit. C. Leaves (left: adaxial surface; right: abaxial surface). D. Portion of inflorescence (side view). E. Portion of inflorescence (top view). F. Involucrate bracts. G. Umbellule (side view), a) involucellate bracteoles, b) calyx teeth. H. Staminate flowers (side view). I. Fertile flower with fruit, style, petals and calyx teeth. J. Mericarps in Taxonomic studies on the genus Sanicula (Apiaceae) from China ( ): The clarification of some morphological distinction between S. orthacantha var. orthacantha and S. orthacantha var. brevispina, with the reduction of S. petagnioides to the synonymy of the former, and S. orthacantha var. stolonifera to
FIGURE. Sanicula orthacantha in the wild (China, Jiangxi, Jiujiang, Lushan, the type locality of S. orthacantha). A. Habitat. B. Habit. C. Leaves (left: adaxial surface; right: abaxial surface). D. Portion of inflorescence (side view). E. Portion of inflorescence (top view). F. Involucrate bracts. G. Umbellule (side view), a) involucellate bracteoles, b) calyx teeth. H. Staminate flowers (side view). I. Fertile flower with fruit, style, petals and calyx teeth. J. Mericarps
FIGURE. Sanicula orthacantha var. brevispina in the wild (China, Sichuan, Emei Shan, the type locality of S. orthacantha var. brevispina and S. orthacantha var. stolonifera). A. Habitat and habit. B. Rhizome. C. Leaves (left: adaxial surface; right: abaxial surface). D. Portion of inflorescence (side view). E. Portion of inflorescence (top view). F. Involucrate bracts. G. Umbellule (side view), a) involucellate bracteoles, b) calyx teeth. H. Staminate flowers (side view). I. Fertile flower with fruit, style, petals and calyx teeth. J. Mericarps. in Taxonomic studies on the genus Sanicula (Apiaceae) from China ( ): The clarification of some morphological distinction between S. orthacantha var. orthacantha and S. orthacantha var. brevispina, with the reduction of S. petagnioides to the synonymy of the former, and S. orthacantha var. stolonifera to
FIGURE. Sanicula orthacantha var. brevispina in the wild (China, Sichuan, Emei Shan, the type locality of S. orthacantha var. brevispina and S. orthacantha var. stolonifera). A. Habitat and habit. B. Rhizome. C. Leaves (left: adaxial surface; right: abaxial surface). D. Portion of inflorescence (side view). E. Portion of inflorescence (top view). F. Involucrate bracts. G. Umbellule (side view), a) involucellate bracteoles, b) calyx teeth. H. Staminate flowers (side view). I. Fertile flower with fruit, style, petals and calyx teeth. J. Mericarps.
Dataset of "Telemedicine and its acceptance by patients with type 2 diabetes mellitus at a single care center during the COVID-19 emergency: A prospective observational study"
<p>Dataset of the article titled "Telemedicine and its acceptance by patients with type 2 diabetes mellitus at a single care center during the COVID-19 emergency: A prospective observational study”.</p> <p> </p> <p> </p>
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).
Supplemental material for "Statins, type 2 diabetes and body mass index: a univariable and multivariable Mendelian randomization study"
<p>Supplemental material for "Statins, type 2 diabetes and body mass index: a univariable and multivariable Mendelian randomization study" by Guoyi Yang and C Mary Schooling.</p>
LC-HRMS study of Arabidopsis root metabolome in wild-type Col-0 and npr1 mutant upon in vitro inoculation with Streptomyces sp. AgN23.
<p>This archive compiles datasets related to studies of <em>Streptomyces</em> sp. AgN23 interaction with <em>Arabidopsis thaliana</em>. Ultra-high-performance liquid chromatography-high-resolution MS (UHPLC-HRMS) analyses were performed on a Q Exactive Plus quadrupole (Orbitrap) mass spectrometer, equipped with a heated electrospray probe (HESI II) coupled to a U-HPLC Ultimate 3000 RSLC system (Thermo Fisher Scientific, Hemel Hempstead, United Kigdom). For each biological sample, the RAW file obtained in ESI+ and ESI- mode were retrieved from the Xcalibur version 4.4 software and are deposited in separate sub-folders termed "RawPos" and "RawNeg". Each folder contains all the data relative to the cohort comprising "Blank" samples (n=13), Quality Check samples (pool of all samples from the cohort) "QC" (n=8), Control Col-0 plant samples "Col0CTRL" (n=6), Col-0 plant inoculated with AgN23 samples "Col0AgN23WT" (n=6), Control npr1 plant samples"NPR1CTRL" (n=6), npr1 plant inoculated with AgN23 samples "NPR1AgN23WT" (n=6). The files belonging to Negative mode bare the "neg" suffix and those belonging to Positive mode "pos" suffix, i.e. "Col0AgN23WT1_neg" and Col0AgN23WT1_pos". The details regarding samples preparation, analytic parameters and mass spectrometry, statistical treatment and visualization of the data will be made available in the publication relating to this archive. </p>
Dataset for the study "Deep Learning-Based Precipitation Simulation for Different Types of Weather Events in Eastern China"
<p>This dataset contains the data and codes used in the study "Deep Learning-Based Precipitation Simulation for Different Types of Weather Events in Eastern China". The resources will be updated continously.</p>
Data and code used for 'Thigh-Worn Accelerometry: A Comparative Study of Two No-Code Classification Methods for Identifying Physical Activity Types'
<p>This repository contains all data necessary to reproduce the results for the manuscript titled 'Thigh-Worn Accelerometry: A Comparative Study of Two No-Code Classification Methods for Identifying Physical Activity Types'.</p> <p> </p> <h2><strong>File structure</strong></h2> <p><strong>- analysis</strong></p> <p>The analysis subfolder contains all R scripts used for the study:</p> <p>1. Sample size estimation<br>2. Synchronisation of the timestamps<br>3. Processing of the raw data<br>4. Calculating the interrater agreement<br>5. Calculating all performance metrics and producing the plots</p> <p>In addition, the two subfolders contain the plots and result tables produced when running the scripts.</p> <p> </p> <p><strong>- data</strong></p> <p>The data folder contains all raw data as well as the processed data. A subfolder for each subject contains the video annotations (.eaf), the raw acceleration data (.csv) and the SENS motion classification data (.csv).</p> <p>The ActiPASS subfolder contains the raw acceleration files in binary file format as well as the ActiPASS output.</p> <p>The shiny subfolder contains the R code used for running the shiny app during data collection as well as the logged data and timestamps.</p> <p> </p> <p><span><strong><span>- documents</span></strong></span></p> <p><span>This folder contains any additional documents used in the study.</span></p> <p> </p> <h2><strong><span>Requirements</span></strong></h2> <p>The data processing and analysis was performed in R (Version 4.3.2). To run the full analysis in R, the following packages need to be installed:</p> <ul> <li>tidyverse</li> <li>xml2</li> <li>lubridate</li> <li>here</li> <li>dygraphs</li> <li>hms</li> <li>irr</li> <li>yardstick</li> <li>cowplot</li> <li>gt</li> </ul>
Data for publication ''Interactive nutrition education is more effective in terms of improved levels of glycated hemoglobin in adolescent patients with poorly controlled type 1 diabetes – a randomized study''
<p>Data present changes in the most important clinical parameters after 3 and 6 months from the applied educational intervention in the group of children and adolescents with type 1 diabetes.</p>
Data for publication on the impact of two different nutrition education methods on the quality of life of children and adolescents with type 1 diabetes (randomized study)
<p>Data present changes in the quality of life 6 months after the educational intervention applied in the group of children and adolescents with type 1 diabetes.</p>
FIGURE 4 in Towards a better understanding of Tetrapyrgos (Basidiomycota, Agaricales): new species, type studies, and phylogenetic inferences
FIGURE 4. Anatomical features for: Tetrapyrgos olivaceonigra (Horak ZT2131—Holotype a–c). a. Basidiospores. b. Basidium and basidiole. c. Cheilocystidia. Tetrapyrgos reducta (Singer B1266—Holotype d–f). d. Basidiospores. e. Cheilocystidia. f. Pileipellis terminal cell. Tetrapyrgos tropicalis (Gordon 3461—Holotype g) g. Basidiospores. Scale bar = 10 μm. Illustrated by D.E. Desjardin.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.