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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
HIV-1 integration in microglia (ChIP-seq of CTCF-KD/-NT)
GEO Series GSE220859. Homo sapiens. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiChIP II)
GEO Series GSE215044. Mus musculus. 8 samples. Type: Other.
CTCF-mediated 3D chromatin predetermines the gene expression program in the male germline (ChIP-seq)
GEO Series GSE244675. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure [ChIP-seq]
GEO Series GSE96691. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF functions as a chromatin insulator in the HoxA cluster during neurogenesis [ChIP-Seq]
GEO Series GSE60232. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Enhancer-promoter interactions and transcription are maintained upon acute loss of CTCF, cohesin, WAPL, and YY1
GEO Series GSE178982. Mus musculus. 173 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF and Cohesin link sex-biased distal regulatory elements to sex-biased gene expression in mouse liver
GEO Series GSE131128. Mus musculus. 43 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei
GEO Series GSE237050. Homo sapiens; Xenopus laevis; Mus musculus. 19 samples. Type: Other.
CTCF translates IL-2- and αKG-sensitive metabolic changes in T cells into context-dependent differentiation gene programs [ChIP-Seq]
GEO Series GSE88857. Mus musculus. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [ChIP-seq_set6]
GEO Series GSE192426. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire [3C-HTGTS]
GEO Series GSE287937. Mus musculus. 21 samples. Type: Other.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (RNA-Seq II)
GEO Series GSE215043. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF [ChIP-chip]
GEO Series GSE27074. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CTCF ChIP-seq in OCM1 cells
GEO Series GSE154736. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A negatively-charged region within C-terminal domain maintains proper CTCF DNA binding (4C-Seq)
GEO Series GSE261209. Homo sapiens. 12 samples. Type: Other.
CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system [ChIP-seq]
GEO Series GSE146749. Drosophila melanogaster. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The genome wide mapping of H3K4kme3, H3K27ac and H3K27me3 in Ctcf f/f and Ctcf Δ/Δ CALM-AF10 AML cells [ChiP-seq]
GEO Series GSE281043. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [ChIP-seq]
GEO Series GSE153400. Mus musculus. 67 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Synergistic insulation of regulatory domains by developmental genes and clusters of CTCF sites [ChIP-seq]
GEO Series GSE252218. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart
GEO Series GSE77644. Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.