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622
datasets available to search
ShareScore release 0.9.0
Dataset results
622 results for “Genomic integrity”
Integrated functional genomics and craniofacial morphogenesis within the FaceBase Consortium: Alk5 mutant (or control) at embryo stage E13.5
GEO Series GSE121200. Mus musculus. 32 samples. Type: Expression profiling by array.
TEX cell fate and differentiation are shaped by 3D genome reorganization and chromatin architecture integrity [ATAC-seq]
GEO Series GSE275497. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dissecting genetic components associated with eye disease using integrative genomic analysis
GEO Series GSE201681. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Integrated functional genomics and craniofacial morphogenesis within the FaceBase Consortium: Alk5 mutant (or control) at embryo stage E12.5
GEO Series GSE121193. Mus musculus. 24 samples. Type: Expression profiling by array.
Gabriella Miller Kids First Pediatric Research Program: An Integrated Clinical and Genomic Analysis of Treatment Failure in Pediatric Osteosarcoma
Although the survival of children with relapsed osteosarcoma is very poor, little is known about the etiology of treatment failure in this disease. The purpose of this project is to perform whole genome sequencing on serial samples from patients with osteosarcoma obtained before treatment, after treatment, and at relapse/metastasis in order to identify the mutations and pathways that are drivers of drug resistance. If successful, our results may help identify patients at high risk for treatment failure and may yield new treatments for children who cannot currently be cured.
Integrating Longitudinal Clinical, Sociodemographic and Genomic Data into the NCCR
The goal of this study is to contribute clinical and genomic data from a large institutional cohort of pediatric cancer patients who had tumor genomic profiling between 2013 and 2019 at Dana-Farber/Boston Children's Hospital Cancer and Blood Disorders Center. Clinical data include demographics, diagnosis (classified according to the International Classification of Diseases for Oncology (ICD-O-3.2), stage, and biospecimen associated data. Tumors were sequenced with OncoPanel, a targeted next-generation DNA sequencing panel of up to 447 cancer genes for detection of single-nucleotide variants (SNV), insertions, and deletions, and copy number alterations (CNA), as well as selected intronic regions for up to 60 genes for the detection of structural variants (SV). This dataset includes a patient and sample identifier (GENIE ID) that can be used to link the genomic data included in this dataset to additional longitudinal clinical cancer data on a subset of patients that was submitted to the National Childhood Cancer Registry (NCCR).
Gabriella Miller Kids First Pediatric Research Program: An Integrated Clinical and Genomic Analysis of Treatment Failure in Pediatric Osteosarcoma
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Integrating Longitudinal Clinical, Sociodemographic and Genomic Data into the NCCR
Open the record for dataset details and reuse information.
The multifaceted roles of the DNA polymerase subunit Pol32 in maintaining genome integrity
GEO Series GSE291566. Saccharomyces cerevisiae. 80 samples. Type: Expression profiling by array.
Integration of genome-wide DNA methylation and transcription uncovered aberrant methylation-regulated genes and pathways in the peripheral blood mononuclear cells of systemic sclerosis
GEO Series GSE117931. Homo sapiens. 74 samples. Type: Expression profiling by array; Methylation profiling by array.
An Integrated Epigenomic and Genomic View on Phyllodes and Phyllodes-like Breast Tumors
GEO Series GSE179458. Homo sapiens. 96 samples. Type: Genome variation profiling by SNP array; Methylation profiling by SNP array.
Cohesin modulates DNA replication to preserve genome integrity [PEM-seq]
GEO Series GSE189692. Homo sapiens. 18 samples. Type: Other.
Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasis
GEO Series GSE93286. Homo sapiens. 6 samples. Type: SNP genotyping by SNP array.
Analysis of copy number change in cord lining epithelial cells after phage integrase mediated genomic integration.
GEO Series GSE12629. Homo sapiens. 4 samples. Type: Genome variation profiling by SNP array.
Cohesin modulates DNA replication to preserve genome integrity [EdU-BrdU]
GEO Series GSE189760. Homo sapiens. 6 samples. Type: Other.
Integrated miRNA-genomic analysis of sunitinib resistance in clear cell renal cell carcinoma (CCRCC) cell lines
GEO Series GSE183140. Rattus norvegicus; Homo sapiens. 54 samples. Type: Expression profiling by array; Non-coding RNA profiling by array.
Functional dissection of ovarian aging-associated genes NDUFS5 and UBE2L3 through integrated genomic analyses and validation
GEO Series GSE288033. Homo sapiens. 62 samples. Type: Expression profiling by high throughput sequencing.
An integrative analysis of genome-wide methylation and expression in ameloblastoma
GEO Series GSE135672. Homo sapiens. 8 samples. Type: Methylation profiling by array.
Childhood Cancer Data Initiative (CCDI): Integrating Longitudinal Clinical, Sociodemographic and Genomic Data into the NCCR
The goal of this study is to contribute clinical and genomic data from a large institutional cohort of pediatric cancer patients who had tumor genomic profiling between 2013 and 2019 at Dana-Farber/Boston Children's Hospital Cancer and Blood Disorders Center. Clinical data include demographics, diagnosis, stage, and biospecimen associated data. Tumors were sequenced with OncoPanel, a targeted next-generation DNA sequencing panel of up to 447 cancer genes for detection of single-nucleotide variants (SNV), insertions, and deletions, and copy number alterations (CNA), as well as selected intronic regions for up to 60 genes for the detection of structural variants (SV).
Gabriella Miller Kids First Pediatric Research Program: An Integrated Clinical and Genomic Analysis of Treatment Failure in Pediatric Osteosarcoma
Open the record for dataset details and reuse information.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.