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2,135 results for “stabling”
Data from: Stable isotope-based location in a shelf sea setting: accuracy and precision are comparable to light-based location methods
Retrospective determination of location for marine animals would facilitate investigations of migration, connectivity and food provenance. Predictable spatial variations in carbon and nitrogen isotopes in primary production across shelf seas provide a basis for stable isotope-based location. Here, we assess the accuracy and precision that can be obtained through dietary-isotope-based location methods. We build isoscapes from jellyfish tissues and use these to assign scallops of fixed and known individual location, and herring with well-understood population-level distributions in the North Sea. Accuracy and precision for retrospective isotope-based location in the North Sea were of a similar order to light-based location devices, with 75% of individual scallops assigned correctly to areas representing c. 30% of the North Sea, with a mean linear error on the order of 102 km. Applying assignment methods to an alternative migratory species (herring) resulted in ecologically realistic assignments consistent with fisheries survey data. Location methods based on dietary isotopes such as carbon and nitrogen recover the spatial origin of nutrients assimilated into tissues, and this may not correspond directly to the physical location if either the test animal or its prey is highly migratory. Stable isotope-based location can be applied to any marine-feeding organism or derived food product, but the ecological meaning of any assigned area will be more difficult to interpret for large, high trophic level, migratory animals with relatively slow isotopic assimilation rates.
Data from: MarTurtSI, a global database of stable isotope analyses of marine turtles
Marine turtles are both flagship species of conservation concern and indicators of ocean health. As highly migratory species, and despite substantial research effort focusing on nesting females and satellite tagging studies, we still know little about the trophic ecology and habitat use of immature stages and males. Consequently, marine turtle biologists began using stable isotope analyses in the last decade to elucidate various aspects of trophic ecology, including habitat use and trophic position. This has resulted in a burgeoning but largely disconnected literature of mostly single-species case studies. Here we comprehensively synthesize this body of work into a unified data repository, the MarTurtSI database. MarTurtSI contains stable isotope data from six of seven marine turtle species ranging from juveniles to adults, in different developmental, feeding, and breeding habitats across multiple ocean basins. MarTurtSI will be curated and updated with the aim of enabling continued comprehensive and global investigations into the trophic ecology of marine turtles especially in the face of climate change and other conservation challenges.
Fire refugia facilitate forest and savanna co‐existence as alternative stable states
<p>Aim: Does complex topography facilitate the establishment and persistence of fire‐ sensitive (forest) vegetation in a fire‐prone landscape? We test the prediction that fire‐sensitive vegetation will establish and persist in areas where the fire return interval is lower due to a topographic hindrance on fire spread. Location: Hluhluwe–iMfolozi Park, KwaZulu Natal, South Africa.</p> <p>Methods: Using aerial photographs from six time periods between 1937 and 2013, we mapped vegetation changes in Hluhluwe–iMfolozi Park (HiP). Using a general‐ ized additive model (GAM), we built a habitat suitability index (HSI) map for forest vegetation based on topographic variables related to fire behaviour and the vegeta‐ tion distribution maps from each time period. We investigated transitions between vegetation types between time periods based on the HSI map, as well as the effects of neighbourhood vegetation on transition probabilities.</p> <p>Results: Forest cover has increased overall from 1937 to 2013, however, this has not been a linear increase with a peak in extent in the early 1990s. The HSI, using topo‐ graphic predictors associated with fire behaviour, correlates with areas of expansion and contraction of forest vegetation. The patterns of expansion and contraction are, however, more nuanced, with the in situ vegetation neighbourhood playing a large role.</p> <p>Main Conclusions: Forest distributions in HiP have not remained static over time and have expanded into areas that were once savannas. This is a dynamic system where both forest and savanna boundaries can change considerably. Fire refugia are impor‐ tant for the long‐term persistence of forests in fire‐prone landscapes.</p>
Data from: Do macrophylogenies yield stable macroevolutionary inferences? An example from squamate reptiles
Advances in the generation, retrieval, and analysis of phylogenetic data have enabled researchers to create phylogenies that contain many thousands of taxa. These "macrophylogenies"—large trees that typically derive from megaphylogeny, supermatrix, or supertree approaches—provide researchers with an unprecedented ability to conduct evolutionary analyses across broad phylogenetic scales. Many studies have now used these phylogenies to explore the dynamics of speciation, extinction, and phenotypic evolution across large swaths of the tree of life. These trees are characterized by substantial phylogenetic uncertainty on multiple levels, and the stability of macroevolutionary inferences from these data sets has not been rigorously explored. As a case study, we tested whether five recently published phylogenies for squamate reptiles—each consisting of more than 4000 species—yield congruent inferences about the processes that underlie variation in species richness across replicate evolutionary radiations of Australian snakes and lizards. We find discordance across the five focal phylogenies with respect to clade age and several diversification rate metrics, and in the effects of clade age on species richness. We also find that crown clade ages reported in the literature on these Australian groups are in conflict with all of the large phylogenies examined. Macrophylogenies offer an unprecedented opportunity to address evolutionary and ecological questions at broad phylogenetic scales, but accurately representing the uncertainty that is inherent to such analyses remains a critical challenge to our field.
Data from: The pyriform egg of the Common Murre (Uria aalge) is more stable on sloping surfaces
The adaptive significance of avian egg shape is a long-standing problem in biology. For many years, it was widely believed that the pyriform shape of the Common Murre (Uria aalge) egg allowed it to either "spin like a top" or "roll in an arc," thereby reducing its risk of rolling off the breeding ledge. There is no evidence in support of either mechanism. Two recent alternative hypotheses suggest that a pyriform egg confers mechanical strength and minimizes the risk of dirt contamination of the blunt end. We present a new hypothesis: that the Common Murre egg's pyriform shape confers stability on the breeding ledge, thus reducing the chance that it will begin to roll. We tested this hypothesis by measuring the stability of Common Murre and Razorbill (Alca torda) eggs of different shapes on slopes of 20°, 30°, and 40° above the horizontal. Common Murre eggs were more stable, and easier to stabilize, than the more elliptical Razorbill eggs. Within Common Murre eggs, more pyriform eggs were more stable. From a fitness perspective, the stability of the Common Murre egg on a slope seems likely to confer an advantage and thus may be a strong force of natural selection favoring the pyriform shape.
Data from: The diverse dietary profiles of MIS 3 cave bears from the Romanian Carpathians: insights from stable isotope (δ13C and δ15N) analysis
Late Pleistocene European cave bears (Ursus spelaeus) have been considered to be largely vegetarian, although stable isotope data (δ13C and δ15N values) from the Romanian Carpathians has suggested considerable dietary variation. Here we evaluate previous and additional adult cave bear isotopic data from four Marine Isotope Stage 3 (MIS 3) sites in the Carpathians. Peştera Urşilor (N = 35), Peştera Cioclovina (N = 32), Peştera Muierilor (N = 8), and Peştera cu Oase (N = 72) provide both a dichotomy between samples suggesting vegetarian diets (from Cioclovina and Muierilor) and more omnivorous diets (from Urşilor and Oase), and considerable isotopic variation within samples from each site. While an inference of a strictly vegetarian diet may apply to groups that lived in ecosystems which restricted the available animal protein for these large ursids, the within and between sample isotopic variation among the Carpathian cave bears indicates considerable flexibility in their sources of protein and hence in their dietary regimes. In addition, developmental assessment of Cioclovina isotopic profiles (neonates, juveniles, sub-adults and adults) provides patterns of transfer of stable isotope signatures throughout immature life for both δ13C and δ15N (increase and decrease, respectively), whereas those from Urşilor show little developmental shift.
Stable flies, Stomoxys calcitrans L. (Diptera: Muscidae), improve offspring fitness by avoiding oviposition substrates with competitors or parasites
<p><span>Oviposition site selection by gravid female insects is an important determinant in species distribution, abundance, and population dynamics. Females may assess the suitability of a potential oviposition substrate by using cues from conspecific or heterospecific individuals already present. Here, we assessed whether the presence of conspecific or heterospecific larvae and parasites influenced oviposition decisions by the stable fly, <i>Stomoxys calcitrans</i> (Linneaus). Using dual and multiple-choice oviposition bioassays, we found that gravid female <i>S. calcitrans</i> avoided substrates with conspecific larvae, the larvae of house flies, <i>Musca domestica</i> (Linneaus), and the mite <i>Macrocheles muscaedomesticae</i> (Scopoli). Avoidance of conspecific and heterospecific larvae persisted in the dark, suggesting that this behaviour is mediated by chemical rather than visual cues. When we reared <i>S. calcitrans</i> in the presence of conspecific larvae and the larvae of house flies at different densities we found that this negatively affected emergence time, larval weight, larval survival, pupal weight, pupal survival, and adult weight. We also demonstrated that individuals of <i>S. calcitrans</i> developed in the presence of mites exhibited low egg hatchability, and poor larval and adult survival. Our study provides additional support for the "preference-performance" hypothesis in<i> S. calcitrans</i>, with gravid females preferring to lay eggs on a substrate that will enhance offspring fitness. We recommend that the chemical cues involved in avoidance by gravid female <i>S. calcitrans</i> of substrates with conspecific and heterospecific larvae should be elucidated. This could lead to the discovery of repellent chemicals important for <i>S. calcitrans</i> management.</span></p>
Data from: Pine afforestation decreases the long-term performance of understory shrubs in a semiarid Mediterranean ecosystem: a stable isotope approach.
1. Plant–plant interactions shape the structure and composition of plant communities, but shifts in interaction outcomes might occur in the face of ongoing climate change. 2. We assessed the influence of Pinus halepensis plantations on the long-term ecophysiological performance of understorey vegetation, by conducting a retrospective comparison (1989–2007) of growth-ring widths, δ13C and δ18O between Rhamnus lycioides shrubs from two contrasting vegetation types: P. halepensis plantations vs. open woodlands. We also measured the leaf δ13C, δ18O, δ15N, and nutrient concentrations of understorey R. lycioides shrubs growing at varying distances from planted trees within pine plantations. 3. Dendroecological and stable isotope data revealed strong competitive effects of planted P. halepensis trees on R. lyciodies. Shrubs in pine plantations showed lower radial growth and higher growth ring δ13C and δ18O than those in open woodlands, indicating lower stomatal conductance and photosynthesis in the former. The strong competitive effects of P. halepensis on understorey R. lycioides were most evident in wet, productive years. Conversely, in very dry years, there were indications of a facilitative effect of planted P. halepensis canopies on understorey shrubs. 4. Within pine plantations, understorey R. lycioides shrubs growing at shorter distances from planted trees were forced to rely on more superficial and ephemeral soil water sources, which reduced their stomatal conductance (higher leaf δ18O) and interfered with nutrient uptake (lower leaf N and P concentrations and more negative δ15N). 5. The intrinsic water use efficiency of R. lycioides shrubs growing in open woodlands has increased during recent decades as a result of their ability to adjust their stomatal conductance in response to increasing temperature and atmospheric CO2. However, this adaptive response was much weaker or absent in the severely drought-stressed shrubs from pine plantations. 6. Pine afforestation strongly reduces water and nutrient availability for understorey shrubs in drylands, with potential long-term consequences for ecosystem biodiversity, structure and functioning. Competition by P. halepensis on R. lycioides clearly outweighed facilitation in the long-term, thus compromising the ability of understorey shrubs in semi-arid pine plantations to cope with climate change.
Transient invaders can induce shifts between stable states of microbial communities
<p>Microbial dispersal often leads to the arrival of outsider organisms into ecosystems. When their arrival give rise to successful invasions, outsider species establish within the resident community, which can dramatically alter the ecosystem. Seemingly less influential, the potential impact of unsuccessful invaders that interact only transiently with the community has remained largely ignored. Here, we experimentally demonstrate that such transient invasions can perturb the stability of microbial ecosystems and induce a lasting transition to an alternative stable state, even when the invader species itself does not survive the transition. First, we develop a mechanistic understanding of how environmental changes caused by such transient invaders can drive a community shift in a simple, bistable model system. Beyond this, we show that transient invaders can also induce switches between stable states in more complex communities isolated from natural soil samples. Our results demonstrate that short-term interactions with an invader species can induce lasting shifts in community composition and function.</p>
Data from: Stable social relationships between unrelated females increase individual fitness in a cooperative bird
Social animals often form long-lasting relationships with fellow group members, usually with close kin. In primates, strong social bonds have been associated with increased longevity, offspring survival, and reproductive success. However, little is known about the fitness effects of social bonds between non-kin, especially outside of mammals. In this study, we use long-term field research on a cooperatively breeding bird, the greater ani (Crotophaga major), to ask whether adult females benefit by remaining in long-term associations with unrelated, co-breeding females. We find that females that have previously nested together synchronize their reproduction more rapidly than those nesting with unfamiliar partners, which leads to lower competition and higher fledging success. Importantly, although previous experience with a co-breeding female influenced reproductive synchrony, the degree of reproductive synchrony did not influence whether co-breeding females remained together in subsequent years, ruling out the alternate hypothesis that highly synchronized females are simply more likely to remain together. These results indicate that switching groups is costly to females, and that social familiarity improves reproductive coordination. Stable social relationships, therefore, have significant fitness consequences for cooperatively nesting female birds, suggesting that direct benefits alone may favor the evolution of associations between non-relatives and contribute to long-term group stability.
Data from: Endothermic mosasaurs? Possible thermoregulation of Late Cretaceous mosasaurs (Reptilia, Squamata) indicated by stable oxygen isotopes in fossil bioapatite in comparison with coeval marine fish and pelagic seabirds
The thermoregulatory style of Late Cretaceous mosasaurs has become a highly controversial subject in vertebrate palaeontology. These extinct marine reptiles have previously been described as poikilothermic, endothermic or gigantothermic. Here we analyse three genera of mosasaurs from the Mooreville Chalk in Alabama (USA) of differing body mass, and compare their δ18OPO4 derived body temperatures (Tb) with those of coeval poikilothermic fish (Enchodus) and endothermic pelagic seabirds (Ichthyornis). Results show that all mosasaurs, Clidastes (Tb = 33.1°C), Platecarpus (Tb = 36.3°C), and Tylosaurus (Tb = 34.3°C), had elevated average body temperatures in relation to those of the fish (Tb = 28.3°C) and were closer to those of Ichthyornis (Tb = 38.6°C). The temperatures calculated for Enchodus compare well with previously reported temperature estimates for the Mooreville Chalk and the Tb of Ichthyornis compares well with temperatures that have been reported for modern seabirds, suggesting that this method provides accurate results. Finally, although there are small differences of body temperature among mosasaur genera, these are independent of size, and thus inferred body mass, suggesting that mosasaurs were not gigantotherms, but rather endotherms.
Data from: Stable recombination hotspots in birds
The DNA-binding protein PRDM9 has a critical role in specifying meiotic recombination hotspots in mice and apes, but it appears to be absent from other vertebrate species, including birds. To study the evolution and determinants of recombination in species lacking the gene that encodes PRDM9, we inferred fine-scale genetic maps from population resequencing data for two bird species: the zebra finch, Taeniopygia guttata, and the long-tailed finch, Poephila acuticauda. We found that both species have recombination hotspots, which are enriched near functional genomic elements. Unlike in mice and apes, most hotspots are shared between the two species, and their conservation seems to extend over tens of millions of years. These observations suggest that in the absence of PRDM9, recombination targets functional features that both enable access to the genome and constrain its evolution.
Data from: City life alters the gut microbiome and stable isotope profiling of the eastern water dragon (Intellagama lesueurii)
Urbanisation is one of the most significant threats to biodiversity, due to the rapid and large-scale environmental alterations it imposes on the natural landscape. It is, therefore, imperative that we understand the consequences of, and mechanisms by which, species can respond to it. In recent years, research has shown that plasticity of the gut microbiome may be an important mechanism by which animals can adapt to environmental change, yet empirical evidence of this in wild non-model species remains sparse. Using an empirical replicated study system, we show that city life alters the gut microbiome of a wild native non-model species – the eastern water dragon (Intellagama lesueurii). City dragons exhibit a more diverse gut microbiome than their native riparian counterparts and show gut microbial signatures of a high fat and plant rich diet. These results highlight the role that gut microbial plasticity plays in an animals' response to human-altered landscapes.
Data from: Stable isotopes reveal differences in diet among reed bunting subspecies that vary in bill size
Reed bunting (Emberiza schoeniclus) subspecies vary considerably in bill size and shape and seem to be at an early stage of speciation, in which bill might be indirectly causing reproductive isolation. Hence, we evaluated whether bill size, as well as age and sex, are associated with foraging niche in three West European subspecies of reed bunting: the thin-billed schoeniclus, the intermediate-billed lusitanica and the thick-billed witherbyi. Blood sampling was undertaken at three sites in southwest Europe during the winter (when these subspecies co-occur), and stable isotope analyses (carbon and nitrogen) were performed to assess their foraging niches. Stable isotope analyses of potential food items confirmed uniform baseline isotopic composition among sites. schoeniclus showed a significantly broader isotopic niche than lusitanica and witherbyi, which seemed otherwise similar despite the fact that witherbyi is more divergent in bill traits. Stable isotope ratios were consistent with the latter two subspecies feeding on C3-plant-feeding insects, whereas schoeniclus diet also included C4 plant material. Despite its lower sexual dimorphism, sex and age differences were found only in schoeniclus, but these differences vary between locations in a complex manner. Our results suggest that bill size and shape differentiated between northern, migratory and southern, resident subspecies as a consequence of natural selection through competition during the winter, which is now reflected in isotopic niche divergence between subspecies. The potential roles of sexual selection, reed thickness and summer temperature on the difference in bill size (and greater sexual dimorphism) between lusitanica and witherbyi are discussed.
Data from: Predation drives stable coexistence ratios between red and green pea aphid morphs
We conducted field surveys and experiments to evaluate the hypothesis that predation is an important driving factor determining the degree of coexistence between red and green morphs of the pea aphid Acyrthosiphon pisum. Theory suggests that the different colour morphs are differentially susceptible to natural enemies and selection by predation which in turn leads to variable relative abundances of red and green morphs among host plants across landscapes. Our field surveys on pea and alfalfa revealed, however, that the colour morphs tended to coexist closely in a ratio of one red to three green aphids across fields with different host plant monocultures. Experimentation involving manipulation of the relative abundances of the two colour morphs on host plants pea and alfalfa with and without predator presence revealed that red morphs had higher or same fitness (per capita reproduction) than green morphs on both pea and alfalfa only when in the proportion of one red/three green proportion. Moreover, experimentation evaluating predator efficiency revealed that red morphs are safest from predation when in a 1 : 3 ratio with green morphs. These results suggest that in addition to predation selection effects, red morphs may behaviourally choose to associate with green morphs in a narrow 1 : 3 ratio to maximize their fitness. This evidence, along with existing published data on red and green morph anti-predator behaviour indicates that a 1 : 3 red and green morph coexistence ratio is driven by a balance between predation pressure and behavioural assorting by red morphs across landscapes. In this way predators may have ecological-evolutionary consequences for traits that affect the colour morphs' proportion and tolerances to selective pressure.
Protein stable isotope fingerprinting (P-SIF): Pure culture samples, under various growth substrates
<p>Carbon stable isotope data for proteins extracted from a variety of pure culture samples.</p>
Observations of molecular hydrogen (H2) mixing ratio and stable isotopic composition (deuterium content) at the Cabauw tall tower in the Netherlands
<p>This zip file contains the final corrected data that were used for the journal article "Observations of molecular hydrogen mixing ratio and stable isotopic composition at the Cabauw tall tower in the Netherlands" by Batenburg et al., Atmospheric Environment, 2016, doi:10.1016/j.atmosenv.2016.09.058<br> <br> Please cite the original AtmosEnv article when using these data.<br> The paper also contains more information about how these data were collected and calibrated, and on how the quality control flags were assigned.</p> <p>All samples were collected at the Cabauw tower, at the CESAR site (51.971° N, 4.927° E, http://www.cesar-observatory.nl/).<br> H2 and deltaD(H2) are calibrated using one to four laboratory reference air cylinders, depending on measurement period.<br> The H2 mixing ratio of the reference cylinders was determined by UHEI-IUP, MPI-BGC, or the IMAU isotope laboratory.<br> The deltaD(H2) of the reference cylinders is, sometimes indirectly, linked to the VSMOW scale by measurements of air mixtures containing H2 standards of known isotopic composition.<br> H2 scale: MPI2009, Jordan and Steinberg, AMT, 2011, doi:10.5194/amt-4-509-2011<br> deltaD(H2) units: permil deviation from VSMOW, Gonfiantini et al., IAEA-TECDOC-825, IAEA</p> <p>Times are UTC. </p> <p><br> The corresponding author can be reached through annekebatenburg@gmail.com for questions.</p>
Data for "In situ stable crack growth at the micron scale"
<p>Data for "In situ stable crack growth at the micron scale"</p>
LMDZ6iso output - Antarctic water stable isotopes in the global atmospheric model LMDZ6: from climatology to boundary layer processes
<h3><strong>Update of the Simulation</strong></h3> <p dir="ltr">This archive contains the output of a revised simulation, addressing issues identified in the original simulation described in the following article:</p> <p><em>Dutrievoz, N., Agosta, C., Risi, C., Vignon, É., Nguyen, S., Landais, A., ... & Prié, F. (2025). Antarctic water stable isotopes in the global atmospheric model LMDZ6: From climatology to boundary layer processes. Journal of Geophysical Research: Atmospheres, 130(5), e2024JD042073.</em></p> <p>All information is available here:<strong> <a href="https://docs.google.com/document/d/1x4FSGtNiJGqsMoks38yATzTQJ7T8sO8iXqeWagTU5yE/edit?usp=sharing">README</a></strong></p> <p>Researchers and colleagues are welcome to contact me at <strong>niels.dutrievoz@lsce.ipsl</strong>.<strong>fr</strong> for any further information regarding this updated simulation or potential collaborations. Please feel free to reach out if you are interested in daily or hourly output data from this simulation.</p> <p dir="ltr">I look forward to any exchanges that might arise from this work.</p> <p> </p>
A Database of Water Stable Isotopes in Iran's Strategic Aquifers
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.