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FIGURE 3. a in Non-marine Ostracoda (Crustacea) of the Early Cretaceous 'Pre-Salt' sediments of Brazil: An illustrated catalogue of the type specimens of Wicher, Krömmelbein, Krömmelbein & Weber, and Bate

FIGURE 3. a = left lateral, b = dorsal, and c = right lateral views. 1a–c. Cypridea ventronodata Krömmelbein, 1962. Holotype, C, SMF Xe 4177, l 0.63mm; h 0.42mm. 2a–c. Cypridea dromedarius Krömmelbein, 1962. Holotype, C, SMF Xe 4179, l 1.06mm, h 0.80mm. 3a–c. Cypridea opifera Krömmelbein, 1962. Holotype, C, SMF Xe 4181, l 1.15mm, h 0.79mm. 4a–c. Cypridea vulgaris Krömmelbein, 1962. Holotype, C, SMF Xe 4183, l 0.71mm, h 0.46mm. 5a–c. Cypridea armata Krömmelbein, 1962. Holotype, C, SMF Xe 4187, l 0.83 mm, h 0.55 mm. 6a–c. Cypridea ambigua Krömmelbein, 1962. Holotype, C, SMF Xe 4189, l 0.76mm, h 0.46mm. 7a–c. Cypridea salvadoriensis salvadoriensis Krömmelbein, 1962. Holotype, C, SMF Xe 4193, l 1.20mm, h 0.69mm. 8a–c. Cypridea salvadoriensis nodifer Krömmelbein, 1962. Holotype, C, SMF Xe 4195, l 1.27mm, h 0.71mm. 9a–c. Cypridea muelleri Krömmelbein, 1962. Holotype, C, SMF Xe 4197, l 1.05mm, h 0.60mm. 10a–c. Cypridea (Sebastianites) fida Krömmelbein, 1962. Holotype, C, SMF Xe 4203, l 1.15mm, h 0.72mm. 11a–c. Cypridea (Sebastianites) devexa Krömmelbein, 1962. Holotype, C, SMF Xe 4207, l 1.19mm, h 0.76mm. 12a–c. Cypridea (Sebastianites?) mataensis mataensis Krömmelbein, 1962. Holotype, C, SMF Xe 4199, l 0.98mm, h 0.60mm.

FIGURE 4. a in Non-marine Ostracoda (Crustacea) of the Early Cretaceous 'Pre-Salt' sediments of Brazil: An illustrated catalogue of the type specimens of Wicher, Krömmelbein, Krömmelbein & Weber, and Bate

FIGURE 4. a = left lateral, b = dorsal, and c = right lateral views. 1a–c. Cypridea (Sebastianites?) mataensis vercellinoi Krömmelbein, 1962. Holotype, C, SMF Xe 4201, l 1.12mm, h 0.78mm. 2a–c. Cypridea (Sebastianites?) onusta Krömmelbein, 1962. Holotype, C, SMF Xe 4205, l 1.20mm, h 0.78mm. 3a–c. Cypridea (Sebastianites?) sostensis Krömmelbein, 1962. Holotype, C, SMF Xe 4191, l 0.97mm, h 0.57mm. 4a–c. Cypridea (Morinina?) bibullata tribullata Krömmelbein, 1962. Holotype, C, SMF Xe 4212, l 0.99mm h 0.56mm. 5a–c. Cypridea (Morinina?) langei Krömmelbein, 1962. 'Hypotype', C, SMF Xe 4216, l 1.25 mm, h 0.66 mm. 6a–c. Cypridea (Morininoides) candeiensis Krömmelbein, 1962. Holotype, C, SMF Xe 4217, l 0.93mm, h 0.55mm. 7a–c. Cypridea (Morininoides) hadronodosa Krömmelbein, 1962. Holotype, C, SMF Xe 4222, l 1.06mm, h 0.70mm. 8a–c. Paracypridea elegans Krömmelbein, 1962. Holotype, C, SMF Xe 4165, l 1.05mm, h 0.59mm. 9a–c. Candona? gregaria Krömmelbein, 1962. Holotype, C, SMF Xe 4225, l 1.98mm, h 1.09mm. 10a–c. Candona? condensa Krömmelbein, 1962. Holotype, C, SMF Xe 4227, l 0.96mm, h 0.74mm. 11a–c. Candona? redunca Krömmelbein, 1962. Holotype, C, SMF Xe 4229, l 0.84mm, h 0.51mm. 12a–c. Reconcavona cancellata Krömmelbein, 1962. Holotype, C, SMF Xe 4236, l 0.81mm, h 0.47mm.

FIGURE 11. a in Non-marine Ostracoda (Crustacea) of the Early Cretaceous 'Pre-Salt' sediments of Brazil: An illustrated catalogue of the type specimens of Wicher, Krömmelbein, Krömmelbein & Weber, and Bate

FIGURE 11. a = left lateral, b = dorsal, and c = right lateral views. 1a–c. Hourcqia africana africana Krömmelbein, 1965. Topotype, C, BfB 7793, l 0.97mm, h 0.62mm, w 0.47mm. 2a–c. Hourcqia africana confluens Krömmelbein & Weber, 1971. Holotype, C, BfB 7794, l 1.05mm, h 0.71mm, w 0.50mm. 3a–c. Hourcqia angulata angulata Krömmelbein & Weber, 1971. Holotype, C, BfB 7795, l 0.86mm, h 0.58mm, w 0.42mm. 4a–c. Hourcqia angulata sinuata Krömmelbein & Weber, 1971. Holotype, C, BfB 7796, l 0.78mm, h 0.54mm, w 0.37mm. 5a–c. Hourcqia angulata symmetrica Krömmelbein & Weber, 1971. Holotype, C, BfB 7797, l 1.12mm, h 0.72mm, w 0.58mm. 6a–c. Hourcqia angulata salitrensis Krömmelbein & Weber, 1971. Holotype, C, BfB 7798, l 1.14mm, h 0.77mm, w 0.64mm. 7a–c. Petrobrasia tenuistriata longiuscula Krömmelbein & Weber, 1971. Holotype, C, BfB 7799, l 1.12mm, h 0.57mm, w 0.36mm. 8a–c. Petrobrasia? badajosensis Krömmelbein & Weber, 1971. Holotype, C, BfB 7800, l 0.88mm, h 0.52mm, w 0.34mm. 9a–c. Petrobrasia? gutta Krömmelbein & Weber, 1971. Holotype, C, BfB 7801, l 0.79mm, h 0.48mm, w 0.35mm. 10a–c. Petrobrasia capivarensis Krömmelbein & Weber, 1971. Holotype, C, BfB 7802, l 0.97mm, h 0.60mm, w 0.34mm. 11a–c. Petrobrasia vallata Krömmelbein & Weber, 1971. Holotype, C, BfB 7805, l 0.77mm, h 0.40mm, w 0.21mm. 12a–c. Salvadoriella? pusilla Krömmelbein & Weber, 1971. Holotype, C, BfB 7808, l 0.57mm, h 0.27mm, w 0.24mm.

FIGURE 1. a in Non-marine Ostracoda (Crustacea) of the Early Cretaceous 'Pre-Salt' sediments of Brazil: An illustrated catalogue of the type specimens of Wicher, Krömmelbein, Krömmelbein & Weber, and Bate

FIGURE 1. a = left lateral, b = dorsal, and c = right lateral views. 1a–c. Cytheridea bononiensis (Jones) inflata Wolburg. C, T.-K.-Nr. 3182, l 0.83mm, h 0.25mm, w 0.49mm. 2a–c. Cypridea obovata obovata Swain, 1946. C, T.-K.-Nr. 3168, l 1.41mm, h 0.58mm, w 0.88mm. 3a–c. Cypridea obovata (Swain) rhomboidalis Wicher, 1959. Holotype, C, T.-K.-Nr. 3169, l 2.34mm, h 0.86mm, w 1.14mm. 4a–c. Cypridea obovata (Swain) quadrirugosa Wicher, 1959. Holotype, C, T.-K.-Nr. 3170, l 1.56mm, h 0.63mm, w 0.88mm. 5a–c. Cypridea quadrilateralis Swain bibullata Wicher, 1959. Holotype, C, T.-K.-Nr. 3171, l 0.99mm, h 0.45mm, w 0.53mm. 6a–c. Cypridea quadrilateralis Swain inflata Wicher, 1959. Holotype, C, T.-K.-Nr. 3172, l 1.36mm, h 0.66mm, w 0.76mm. 7a–c. Cypridea kegeli Wicher, 1959. Holotype, C, T.-K.-Nr. 3175, l 0.85mm, h 0.39mm, w 0.55mm. 8a–c. Cypridea kegeli bisculpturata Moos in Wicher, 1959. Holotype, C, T.-K.-Nr. 3176, l 0.63mm, h 0.36mm, w 0.25mm. 9a–c. Cypridea nitidula Peck, 1941 Moos in Wicher, 1959. C, T.-K.-Nr. 3177, l 0.97mm, h 0.58mm, w 0.44mm. 10a–c. Cypridea brevicornis Peck, 1941 Moos in Wicher, 1959. C, T.-K.-Nr. 3178, l 1.05mm, h 0.64mm, w 0.43mm. 11a–c. Cypridea acuta Moos in Wicher, 1959. Holotype, C, T.-K.-Nr. 3179, l c. 1.40mm, h 0.72mm, w c. 0.57mm. 12a–c. Cypridea (Pseudocypridina) piedmonti (Roth, 1933) Moos in Wicher, 1959. C, T.-K.-Nr. 3180, l 0.70mm, h 0.12mm, w 0.45mm.

FIGURE 2 in Description of Maghreboniscus rojasi sp. nov. from Southern Spain and validation of the genus by the designation of a type species (Isopoda: Oniscidea: Spelaeoniscidae)

FIGURE 2. Maghreboniscus rojasi sp. nov., male paratype. A. Dorsal scale-setae; B. Cephalon, frontal view; C. Left half of first pereon-tergite, extended; D. Pleotelson and uropods, dorsal view; E. Right uropod, dorsal view; F. First antenna; G. Second antenna.

FIGURE 3 in Description of Maghreboniscus rojasi sp. nov. from Southern Spain and validation of the genus by the designation of a type species (Isopoda: Oniscidea: Spelaeoniscidae)

FIGURE 3. Maghreboniscus rojasi sp. nov., male paratype. A. Right mandible; B. Left mandible; C. Maxillula, distal part of outer endite; D. Maxillula, inner endite; E. Maxilla, distal part; F. Maxilliped, distal part, caudal.

FIGURE 4 in Description of Maghreboniscus rojasi sp. nov. from Southern Spain and validation of the genus by the designation of a type species (Isopoda: Oniscidea: Spelaeoniscidae)

FIGURE 4. Maghreboniscus rojasi sp. nov., male paratype. A. First pereopod, caudal; B. Setae of first pereopod propodus and dactylus, frontal; C. Seventh pereopod, frontal. D. First pleopods, caudal; E. Second pleopods, caudal.

opencc-by-nc-sa-4.0Oct 2022View details →

Machine learning on large-scale proteomics data identifies tissue- and cell type-specific proteins

<p>Using data from 183 public human data sets from PRIDE, a machine learning model was trained to identify tissue and cell-type specific protein patterns. PRIDE projects were searched with ionbot and tissue/cell type annotation was manually added. Data from physiological samples were used to train a Random Forest model on protein abundances to classify samples into tissues and cell types. Subsequently, a one-vs-all classification and feature importance were used to analyse the most discriminating protein abundances per class. Based on protein abundance alone, the model was able to predict tissues with 98% accuracy, and cell types with 99% accuracy. The F-scores describe a clear view on tissue-specific proteins and tissue-specific protein expression patterns. In-depth feature analysis shows slight confusion between physiologically similar tissues, demonstrating the capacity of the algorithm to detect biologically relevant patterns. These results can in turn inform downstream uses, from identification of the tissue of origin of proteins in complex samples such as liquid biopsies, to studying the proteome of tissue-like samples such as organoids and cell lines</p>

FIGURES 18a–e. Andrena senex Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 18a–e. Andrena senex Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 17a–e. Andrena scita Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 17a–e. Andrena scita Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 16a–e. Andrena nigrifrons Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 16a–e. Andrena nigrifrons Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 15a–e. Andrena longula Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 15a–e. Andrena longula Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 14a–e. Andrena limbata Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 14a–e. Andrena limbata Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 12a–e. Andrena incerta Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 12a–e. Andrena incerta Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 13a–e. Andrena incisa Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 13a–e. Andrena incisa Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 11a–e. Andrena gravida Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 11a–e. Andrena gravida Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 8a–e. Andrena florivaga Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 8a–e. Andrena florivaga Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 10a–e. Andrena fulvitarsis Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 10a–e. Andrena fulvitarsis Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 9a–e. Andrena fulva Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 9a–e. Andrena fulva Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.

FIGURES 7a–e. Andrena floricola Eversmann, 1852 in The type specimens of bees (Hymenoptera, Apoidea) deposited in the Zoological Institute of the Russian Academy of Sciences, St. Petersburg. Contribution V. Family Andrenidae, genus Andrena Fabricius, 1775, species described by E. Eversmann

FIGURES 7a–e. Andrena floricola Eversmann, 1852. Lectotype, female: a—habitus, lateral view and labels; b—head, frontal view; c—labrum, dorsal view; d—T1–T3, dorsal view; e—mesosoma, dorsal view. Scale bar: 1 mm.