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6,383
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ShareScore release 0.9.0
Dataset results
6,383 results for “isolates”
IS5mapping isolates A and B
GEO Series GSE2697. Escherichia coli. 15 samples. Type: Expression profiling by array.
Bulk-RNA-sequencing from chamber specific heart tissue and isolated cardiomyocytes
GEO Series GSE204885. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Single-cell sequencing of CD45+ cells isolated from nasal mucosa of mice
GEO Series GSE297921. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq in pancreatic islets isolated from Arid1aFl/Fl control and Arid1aFl/Fl; UBC-CreERT2 mice (Arid1a KO) with/without pancreatectomy
GEO Series GSE201002. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Comparison of IS5 Deletion mutant to E.coli Motile and NonMotile Isolates
GEO Series GSE2694. Escherichia coli. 16 samples. Type: Expression profiling by array.
Gene expression profiles of adult renal capsule isolated from kidneys using micro-dissection. (GUDMAP Series ID: 36)
GEO Series GSE20639. Mus musculus. 3 samples. Type: Expression profiling by array.
Expression data from CD19-positive B-cells isolated from splenocytes from 8 week-old ingeneered mice from the indicated genotypes
GEO Series GSE69367. Mus musculus. 8 samples. Type: Expression profiling by array.
Gene expression data from Pseudomonas aeruginosa strains isolated from cystic fibrosis lung infections
GEO Series GSE25128. Pseudomonas aeruginosa. 12 samples. Type: Expression profiling by array.
In vivo isolated Wnt1-Prim1 Primary, Residual, and Recurrent Tumor Cells
GEO Series GSE60610. Mus musculus. 11 samples. Type: Expression profiling by array.
Expression data of B lymphocytes isolated from C57BL/6 Tilcara (Til) mouse mutant compared with wild-type C57BL/6 mouse [microarray]
GEO Series GSE137465. Mus musculus. 4 samples. Type: Expression profiling by array.
Expression data from endothelial cells isolated from IL-33 knock-out and wildtype rats
GEO Series GSE121577. Rattus norvegicus. 6 samples. Type: Expression profiling by array.
Chromatin accessibility profiling of freshly isolated mouse lung cancer LLC- and breast cancer 4T1- derived leptomeningeal metastatic cancer cells from different anatomical locations [ATAC-Seq]
GEO Series GSE278624. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Gene Expression data for melanocyte stem cells and melanoblasts isolated from the skin of wild-type mice and B-raf and C-raf double knock-out mice
GEO Series GSE86385. Mus musculus. 8 samples. Type: Expression profiling by array.
Plasma Cell Type Isolated EVs
GEO Series GSE253127. Homo sapiens. 12 samples. Type: Non-coding RNA profiling by high throughput sequencing.
A note on the small mammals of small, isolated forest patches in the Eastern Cape, South Africa
<p>Analyses for the above publication in African Journal of Ecology</p>
First study of the susceptibility of Culex quinquefasciatus from the Amazon Region to become infected and transmit the West Nile virus strain isolated in Brazil
<p><em>West Nile virus</em> is characterized as a neurotropic pathogen transmitted by <em>Culex</em> genus mosquitoes that cause West Nile fever. In 2018, the Evandro Chagas Institute performed the first isolation of a WNV strain in Brazil, from a horse brain sample. This study aimed to evaluate the susceptibility of <em>Cx. quinquefasciatus</em> from the Amazon region of Brazil to become infected and transmit the WNV strain isolated in 2018. Oral infection of naive F1 generation females was performed with sheep bloodmeal artificially infected with WNV, followed by analysis of infection, dissemination, and transmission rates, as well as viral titers of body, head, and saliva samples. The infection rate was 100% in all dpe evaluated. The dissemination rates varied in the three dpe, with a 40%, 37.5%, and 100% in the 7<sup>th</sup>, 14<sup>th</sup>, and 21<sup>st</sup> dpe, respectively. The transmission rate was 100% from the 21<sup>st</sup> dpe. These results indicate that that <em>Cx. quinquefasciatus</em> is susceptible to oral infection by the Brazilian strain of WNV</p>
Gut microbiome strain-sharing within isolated village social networks (extended metadata)
<h2><strong>Abstract</strong></h2> <p>When humans assemble into face-to-face social networks, they create an extended environment that permits exposure to the microbiome of other people, thereby shaping the composition and diversity of the microbiome at individual and population levels. Here, we use comprehensive social network mapping and detailed microbiome sequencing data in 1,787 adults within 18 isolated villages in Honduras to investigate the relationship between social network structure and gut microbiome composition. Using both species-level and strain-level data, we show that microbial sharing occurs between many relationship types, notably including non-familial and non-household connections. Using strain-sharing data alone, we can confidently predict a wide variety of relationship types (AUC ~0.72). This strain-level sharing extends to second-degree social connections in a network, suggesting the relevance of the extended network with respect to microbiome composition. We also observe that socially central individuals are more microbially similar to the overall village than socially peripheral individuals. Using a subset of 301 people in 4 villages whose microbiome was also measured 2 years later, we observed greater convergence in strain-sharing in connected versus otherwise similar unconnected co-villagers. Finally, we observe that clusters of both species and strains occur within clusters of people in the village social networks, providing the social niches within which microbiome biology and phenotypic impact are manifested.</p> <h2><strong>Data Description</strong></h2> <p>Additional access-restricted sample-level metadata. Variables included in this release are:</p> <table> <tbody> <tr> <td>education</td> </tr> <tr> <td>religion</td> </tr> <tr> <td>household_wealth_index</td> </tr> <tr> <td>ethnic_group</td> </tr> <tr> <td>medication_usage</td> </tr> <tr> <td>diet_composition</td> </tr> <tr> <td>water_source</td> </tr> </tbody> </table> <p>Variable descriptions are included in the <code>hnl_hmb_nature_beghini_item6_metadata_2024-05-08.xlsx</code> file</p>
C. purpureus and P. patens isolate sequencing
<p>Sanger sequencing of <em>Ceratodon purpureus </em>and <em>Physcomitrium patens </em>isolates.</p>
RAST annotation for Pseudomonas sp. EZ-C24 isolated from wastewater
<p>RAST annotation for <em>Pseudomonas </em>sp. EZ-C24 isolated from wastewater</p>
Table A1. Summary of the impact of storage conditions on EV-containing biofluids and isolated EVs
<p>Summary of the impact of storage conditions on EV-containing biofluids and isolated EVs</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.