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779
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ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells [ATAC-seq]
GEO Series GSE261179. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [ChIP-seq_set7]
GEO Series GSE192430. Mus musculus. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8+ T cells [HiC]
GEO Series GSE205081. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Alteration of genome folding via engineered transposon insertion [CTCF RAD21 ChIP-seq]
GEO Series GSE152721. Homo sapiens. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dissecting developmental disorders caused by CTCF mutation at R567 [4C]
GEO Series GSE214688. Mus musculus. 8 samples. Type: Other.
CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis [H2_ATAC]
GEO Series GSE201821. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF acetylation at lysine 20 is required for early cardiac mesoderm differentiation from embryonic stem cells [ChIP-Seq]
GEO Series GSE181703. Mus musculus. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF ChIP-seq in human monocytic THP-1 cells with replicates (4)
GEO Series GSE69962. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification of cancer drivers at CTCF insulators in 1,962 whole-genomes
GEO Series GSE128346. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [IV]
GEO Series GSE138919. Homo sapiens; Mus musculus. 358 samples. Type: Other.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire
GEO Series GSE305325. Mus musculus. 6 samples. Type: Other.
Tcf1-CTCF cooperativity shapes genomic architecture to promote CD8+ T cell homeostasis [DNase-Seq]
GEO Series GSE179724. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA-seq of hippocampus from wild type and CTCF cko animals
GEO Series GSE84175. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide profiling of histone modification H3K27ac and CTCF transcription factor binding following VPA treatment in HEK293 cells
GEO Series GSE246314. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [VII]
GEO Series GSE140868. Homo sapiens. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Investigate FOXA2, NKX2-1, CTCF and P300 cistrome and enhancer (H3K27ac and H3k4me1) reprogramming during NEPC transformation by ChIP-seq.
GEO Series GSE239270. Homo sapiens. 104 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Tcf1-CTCF cooperativity shapes genomic architecture to promote CD8+ T cell homeostasis [CTCF Cut&Run]
GEO Series GSE179723. Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Binding domain mutations provide insight into CTCF's relationship with chromatin and its contribution to gene regulation
GEO Series GSE270669. Mus musculus. 130 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
H3K27 and H3K9 Methylation Mask Potential CTCF Binding Sites to Maintain 3D Genome Integrity [ChIP-Seq]
GEO Series GSE297986. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF and transcription orchestrate chromatin structure re-configuration after mitosis [ChIP-seq]
GEO Series GSE168168. Mus musculus. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.