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Greek Text to 3D Trajectories Sign Language Dataset

Entails the 3D human pose trajectories of the Greek Elementary Sign Language Dataset.

Promoting extinction or minimizing growth? The impact of treatment on trait trajectories in evolving populations - Data

This is the dataset used in the manuscript "Promoting extinction or minimizing growth? The impact of treatment on trait trajectories in evolving populations" by Raatz &Traulsen. The code used to generate the data can be found at https://doi.org/10.5281/zenodo.6656842.

Typical flight trajectory of a 7 mm diameter projectile attached to the front surface of a detonator after being propelled by the explosion

A typical result at different time steps of the flight trajectory of a 7 mm diameter projectile is shown in the video. First, the projectile is accelerated by the blast wave generated by the explosive. The projectile’s initial trajectory is hidden by the flash of the detonation. After its passage through the opaque gas cloud, the first appearance of the projectile is captured. A straight trajectory can be tracked. At the end of its straight flight in the air, the position of the projectile impact on the target is recorded.

MD simulation trajectory of DOG/SDPE bilayer and related files

Raw simulation trajectory data of pre-equiblirated DOG/SDPE bilayer and related files from all-atom molecular dynamics simulations. Simulations have been performed with GROMACS-2018.6 with Lipid17 force field and TIP3P water model. The trajectory is 0-2100 ns, and we have disregarded the first 100 ns in our analysis. The system in the trajectory consists of 12 DOG, 116 SDPE and 6400 water molecules. Temperature 310 K, pressure 1 bar.

MD simulation trajectory of POPE/SDG/CHOL bilayer and related files

Simulation trajectory pre-equiblirated POPE/SDG/CHOL bilayer and related files from all-atom molecular dynamics simulations. Simulations have been performed with GROMACS-2018.7 with Lipid17 forcefield and TIP3P water model. The trajectory is 0-1000 ns, and we have disregarded the first 100 ns in our analysis. The system in the trajectory consists of 74 POPE, 12 SDG, 42 CHOL and 6400 water molecules. Temperature 310 K, pressure 1 bar. Publication: https://doi.org/10.1016/j.bbamem.2022.183961

MD simulation trajectory of SDPE/SDG/CHOL bilayer and related files

Simulation trajectory pre-equiblirated SDPE/SDG/CHOL bilayer and related files from all-atom molecular dynamics simulations. Simulations have been performed with GROMACS-2018.7 with Lipid17 forcefield and TIP3P water model. The trajectory is 0-1000 ns, and we have disregarded the first 100 ns in our analysis. The system in the trajectory consists of 74 SDPE, 12 SDG, 42 CHOL and 6400 water molecules. Temperature 310 K, pressure 1 bar. Publication: <a href="https://doi.org/10.1016/j.bbamem.2022.183961">https://doi.org/10.1016/j.bbamem.2022.183961</a>

MD simulation trajectory of POPE/DOG/CHOL bilayer and related files

Simulation trajectory pre-equiblirated POPE/DOG/CHOL bilayer and related files from all-atom molecular dynamics simulations. Simulations have been performed with GROMACS-2018.7 with Lipid17 forcefield and TIP3P water model. The trajectory is 0-1000 ns, and we have disregarded the first 100 ns in our analysis. The system in the trajectory consists of 74 POPE, 12 DOG, 42 CHOL and 6400 water molecules. Temperature 310 K, pressure 1 bar. Publication: <a href="https://doi.org/10.1016/j.bbamem.2022.183961">https://doi.org/10.1016/j.bbamem.2022.183961</a>

MD simulation trajectory of SDPE/DOG/CHOL bilayer and related files

Simulation trajectory pre-equiblirated SDPE/DOG/CHOL bilayer and related files from all-atom molecular dynamics simulations. Simulations have been performed with GROMACS-2018.7 with Lipid17 forcefield and TIP3P water model. The trajectory is 0-1000 ns, and we have disregarded the first 100 ns in our analysis. The system in the trajectory consists of 74 SDPE, 12 DOG, 42 CHOL and 6400 water molecules. Temperature 310 K, pressure 1 bar. Publication: <a href="https://doi.org/10.1016/j.bbamem.2022.183961">https://doi.org/10.1016/j.bbamem.2022.183961</a>

Simulated trajectories of nocturnally migrating birds over western Europe

This dataset contains simulated trajectories of 100 000 nocturnally migrating birds over western Europe, generated with an individual-based model. Simulations were run for fall migrations in 2015, 2016 and 2017.

opencc-by-4.0Mar 2021View details →

Trajectories_Jupyter_Tutorial

These datasets and Jupyter notebooks are used in the single cell trajectories tutorial on the Galaxy Training Network site.

opencc-by-4.0Sep 2022View details →

Trajectory Analysis using Monocle3 - Galaxy Training Material

Input datasets for the trajectory analysis tutorial from the case study series. https://training.galaxyproject.org/training-material/topics/transcriptomics/

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Early postoperative pain trajectories after posterolateral and axillary approaches for thoracic surgery: A prospective monocentric observational study

Less invasive thoracotomies may reduce early postoperative pain. The aims of this study were to identify pain trajectories from postoperative day 0 to 5 after posterolateral and axillary thoracotomies and identify potential factors related to the worst" trajectory. Patients undergoing a posterolateral (92 patients) or axillary (89 patients) thoracotomy between July 2014 and November 2015 were analyzed in this prospective monocentric cohort study. The best-fitting model resulted in four pain trajectory groups: trajectory 1, the "worst", with 29.8% of the patients with permanent significant pain; trajectory 2 with patients with low pain (32.6%), trajectory 3 with patients with a steep decrease in pain (22.7%), trajectory 4 with patients with a steep increase (14.9%). According to a multinomial logistic model multivariable analysis, some predictive factors allow differentiation between trajectory groups 1 and 2. Risk factors for permanent pain are the existence of preoperative pain (OR =6.94, CI 95% [1.54-31.27]) and scar length (OR=1.20 [1.05-1.38])). In contrast, ASA class III is a protective factor to be in group 1 (OR=0.02 [0.001-0.52]). In conclusion, early postoperative pain can be characterized by four trajectories and preoperative pain is the major factor for the worst trajectory of early postoperative pain.

opencc-zeroOct 2022View details →

dryad32/100

Behavioral trajectories of aging prairie voles (Microtus ochrogaster): Adapting behavior to social context wanes with advanced age

Several studies using mice have examined the effects of aging on cognitive tasks, as well as sensory and motor functions. However, few studies have examined the influence of aging on social behavior. Prairie voles (Microtus ochrogaster) are a socially monogamous and biparental rodent that live in small family groups and are now among the most popular rodent models for studies examining social behavior. Although the social behavioral trajectories of early-life development in prairie voles have been well-studied, how social behavior may change throughout adulthood remains unknown. Here we examined behavior in virgin male and female prairie voles in four different age groups: postnatal day (PND) 60–80, 140–160, 220–240, and 300–320. All animals underwent testing in a novel object task, a dominance test, a resident-intruder test, and several iterations of social approach and social interaction tests with varying types of social stimuli (i.e., novel same-sex conspecific, novel opposite-sex conspecific, familiar same-sex sibling/cagemate, small group of novel same-sex conspecifics). We found that age influenced neophobia and dominance, but not social approach behavior. Further, we found that young adult, but not older adult, prairie voles adapt prosocial and aggressive behavior relative to social context and that selective aggression occurs in relation to age even in the absence of a pair bond. Our results suggest that prairie voles calibrate social phenotype in a context-dependent manner in young adulthood and stop adjusting behavior to social context in advanced age, demonstrating that social behavior is plastic not only throughout early development but also well into adulthood. Together, this study provides insight into age-related changes in social behavior in prairie voles and shows that prairie voles may be a viable model for studying the cognitive and physiological benefits of social relationships and social engagement in advanced age.

opencc-zeroOct 2022View details →

How long is the last mile? Evaluating successful malaria elimination trajectories [Dataset]

Annual malaria case series were sought for 56 successful elimination programmes through an extensive non-systematic review of published and unpublished documents, including searches of PubMed (https://pubmed.ncbi.nlm.nih.gov/), Google Scholar (scholar.google.com), Google Books (books.google.com), WHO’s Institutional Repository for Information Sharing (https://apps.who.int/iris), online surveillance databases, and the authors’ existing collection of malaria-related books and reports. Several of these elimination programmes were implemented in regions that today have disputed jurisdictional claims or countries that no longer exist; their inclusion is to understand the impact of the historical programmes implemented there and no statement on their current geopolitical context is intended. When annual case totals were classified by origin, the number of locally acquired (i.e., autochthonous) cases was recorded separately from the number of imported cases. If not classified (as is typical until case incidence falls to very low levels), all reported cases were assumed to be locally acquired. Where locally acquired cases were further subclassified, indigenous and cryptic cases were tallied together, while introduced or induced cases were not included in case totals since such cases may arise sporadically in response to importation and are not considered to jeopardize elimination.  The first year in which zero indigenous or locally acquired cases were recorded was taken as the termination point of the case series, regardless of whether sporadic or resurgent local transmission occurred subsequently. While this definition of elimination is looser than that required for certification by WHO (i.e., three years with no indigenous transmission), it permits us to examine a wider range of elimination experiences, including some where success was not maintained. Secondary re-elimination efforts (where a year with zero local cases was achieved, malaria subsequently resurged, and then elimination was again achieved), as in the case of Mauritius or the former republics of the USSR, were not included.  Sources for the malaria case data are enumerated in the accompanying Word document. For questions or clarifications, please contact Justin Cohen at jcohen@clintonhealthaccess.org.

opencc-by-4.0Nov 2017View details →

MM-MD and QM/MM-MD trajectories of para-nitrophenolate derivatives in aqueous solution

Classical MD (GAFF/TIP3P) performed of four para-nitrophenolate derivatives. All simulated in water for 600000 steps of 2 fs. QM/MM-CPMD (BLYP/TIP3P) simulation of para-nitrophenolate for 44000 steps of 10 a.u. QM/MM-BOMD (BLYP/TIP3P) simulation of three para-nitrophenolate derivatives for 44000 steps of 10 a.u. Input files, output files and trajectories are provided for all of the above.

Fig. 9 in Early ant trajectories: spatial behaviour before behaviourism

Fig. 9 Detour paradigm as designed by Joseph Szymanski in 1911. The ants are deflected by a barrier (heavy black bar) from their habitual homebound course (vertical line at the left-hand side). The ants' corrective courses observed in two classic experiments are shown in green. Solid green arrow: wood ants, Formica rufa (Szymanski 1911), dashed green arrows: harvester ants, Messor barbarus (Santschi 1913a,b). Szymanski as well asCornetz and Santschiinterpreted these courses as the interactive result of forces 1 and 2. The red arrow depicts the eventual path integration (PI) vector pointing from the end of the barrier towards the goal (nest). However, in discussing the results of the detour experiment none of the early authors considered thePI option

Fig. 3 in Early ant trajectories: spatial behaviour before behaviourism

Fig. 3 Envelope of a letter written by Felix Santschi to Victor Cornetz on 27 December 1910.In this letter Santschi asked whether Cornetz had any idea about the sensory basis of lafaculté de direction de la fourmi, the ant's sense of direction, which the addressee had proposed in the same year in his "Trajets de fourmis et retours au nid" (Cornetz 1910a). Courtesy of Colette Chevrot, Saint Etienne Vallée, France

Fig. 8 a in Early ant trajectories: spatial behaviour before behaviourism

Fig. 8 a In 1967 Wolfgang Goll provided the first study in which Ramón y Cajal'sfavorite method,the silverchromate (Golgi) impregnation, was successfully applied in an ant's brain. The figure reproduces Goll's reconstruction of part of the central complex of the wood ant, Formica rufa. Abbreviations dors., dorsal; ZKo and ZKu, Zentralkörper oberer and unterer Teil (fan-shaped body and ellipsoid body), respectively. The Golgi impregnated neurons depict tangential cells of the upper and lower unit of the central complex.The tangential cell in the lower unit exhibits only six rather than the usual eight dendritic columns meaning that either the staining has been incomplete or that two lateral columns have been located in an adjacent section not used for the drawing. In their extensive work on the central complex of locusts, Uwe Homberg and his collaborators have characterized comparable neurons anatomically (e.g., by LuciferYellow staining) and neurophysiologically: for the tangential cells in the upper and lower unit, see Homberg (1994, Fig. 6) and Müller et al. (1997, Fig. 3), respectively. b Since Goll's work it was only in 1995 that Wulfila Gronenberg from the University of Arizona at Tucson succeeded in Golgi-staining neurons in the forebrain (protocerebrum) of ants.The hitherto unpublished figure depicts three Kenyon cells in the mushroom body of Camponotus castaneus. The Golgi impregnated neurons correspond to the "spiny lip Kenyon cells (type KI)" described by Peter G. Mobbs in honeybees (Mobbs 1982). Courtesy ofWulfila Gronenberg

Fig. 7 in Early ant trajectories: spatial behaviour before behaviourism

Fig. 7 Detail of a note written by Santiago Ramón y Cajal. Transcription: Santschi—en Messor (barbara?)—quita palito de ruta y hormigas que estaban habituadas lo extrañan y se paran o se alejan para revenir era un punto de reparo olfativo. Rayos de espejo producen remolinos y agitaciones para continuar camino. In this note Ramón y Cajal refers to two experiments performed by Santschi in Messor barbarus. The first leads to the assumption of some kind of olfactory reference memory.The second deals with one of Santschi's mirror experiments, in which the reflected rays of the sun disturbed the ants and caused them to get agitated, but did not prevent them from finally continuing the way.When Ramón y Cajal performed his own experiments on sensory performances in several species of ants, he finally admitted that theseexperiments were only preliminary ones considered as a starting point for future research. However, already being inhis latesixties he didnot continue thisproject.The handwritten note is from the Cajal archives at the Consejo Superior de Investigaciones Científicas inMadrid,Spain