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695 results for “topologies”
Extended Embedded Discrete Fracture Model for Enhanced Geothermal Systems Considering Fracture Geometrical and Topological Complexities
<p>All the data of numerical simulation results shown in the paper.</p>
High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding
<p>The processed data from the HiPore-C study.</p>
Reference Packet Optical Network Topology for Edge to Core Transport
<p>In this paper, we present a reference multi-layer hierarchical network topology that spans from access to core networks, specifically designed to meet the demands of next-generation 6G communication systems. This topology, inspired by the actual network deployments of Telefónica in medium-sized countries in Europe and America, integrates both IP and optical (DWDM) layers to provide a comprehensive framework for network design, optimization, and analysis. Our primary contribution is the development of an open-source benchmarking network, accessible to both researchers and industry professionals. This resource aims to facilitate the study and advancement of integrated IP and optical networks, addressing key challenges such as traffic aggregation, latency reduction, cost efficiency, and support for advanced<br>applications. We provide guidelines for utilizing this benchmark network, enabling users to evaluate and enhance their solutions for AI-driven network management, ultra-reliable low-latency communication, enhanced mobile broadband, and massive machine-type communication. By sharing this detailed and practical benchmarking network, we seek to foster innovation and collaboration within the optical network community, driving forward the capabilities and performance of future communication networks.</p>
Data for "Long-range crossed Andreev reflection in topological insulator nanowires proximitized by a superconductor"
Open the record for dataset details and reuse information.
Figure 4. Alternative topologies for node B in A reanalysis of Parabuthus (Scorpiones: Buthidae) phylogeny with descriptions of two new Parabuthus species endemic to the Central Namib gravel plains, Namibia
Figure 4. Alternative topologies for node B (Fig. 2) retrieved by analyses with equal weights and implied weights under k = 3–6 (A) and with implied weights under k = 1 and 2 (B, C). See Table 2 for details.
FIGURE. Phylogram of Tolypocladium generated from Maximum likelihood analysis of ITS, SSU and LSU sequence data. Purpureocillium lilacinum (CBS 284.36) was selected as an outgroup taxon. The tree topology of the ML analysis was similar to the BI. Maximum likelihood bootstrap values greater than 75 and Bayesian posterior probabilities over 0.90 were indicated above the nodes. The scale bar indicates 0.006 changes. The new species was in blue. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. Phylogram of Tolypocladium generated from Maximum likelihood analysis of ITS, SSU and LSU sequence data. Purpureocillium lilacinum (CBS 284.36) was selected as an outgroup taxon. The tree topology of the ML analysis was similar to the BI. Maximum likelihood bootstrap values greater than 75 and Bayesian posterior probabilities over 0.90 were indicated above the nodes. The scale bar indicates 0.006 changes. The new species was in blue.
Figure 5. A, topological similarities between gene trees. A in Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
Figure 5. A, topological similarities between gene trees. A non-metric multidimensional ordination plot, based on the Robinson–Foulds (RF) distance between each pair of genes, is used to visualize the topological similarity among the 208 single gene trees. Pairs of gene trees with similar topologies are closer together in the two-dimensional space. Colours represent RF distances between individual gene trees and the extended majority-rule consensus (MRE) phylogeny. B, identifying optimal subsets of genes with the least topological incongruence. The graph shows the Tree Certainty (TC) values from Salichos & Rokas (2013). Information theory approach using the MRE phylogeny as a reference tree, where higher values represent greater congruency between the gene trees and the MRE tree. The x-axis represents the number of genes sampled, following an iterative procedure beginning with the first two genes in the respective ranking and progressively adding genes according to their order in the list. The five ranking criteria all outperformed random gene orders.
The Topology of Poker
<p>Data for "The Topology of Poker"</p>
In-situ cell-type specific chromatin topologies in the brain revealed by genome architecture mapping
GEO Series GSE148792. Mus musculus. 1814 samples. Type: Other.
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs (ChIP-chip)
GEO Series GSE45454. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by genome tiling array.
The cohesin ring uses its hinge to organize DNA using non-topological as well as topological mechanisms
GEO Series GSE105005. Saccharomyces cerevisiae. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling [ChIP-seq]
GEO Series GSE120750. Drosophila virilis; Drosophila busckii. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Allelic topological centering by transcription factors drives oncogenic multi-enhancer transcriptional regulation [HiChIP]
GEO Series GSE293333. Homo sapiens. 3 samples. Type: Other.
PRC2 facilitates the regulatory topology required for poised enhancer function during pluripotent stem cell differentiation [4C-seq]
GEO Series GSE89208. Mus musculus. 12 samples. Type: Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [IV]
GEO Series GSE138919. Homo sapiens; Mus musculus. 358 samples. Type: Other.
Long-distance association of topological boundaries through nuclear condensates (ChIP-Seq)
GEO Series GSE195561. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [4C-seq]
GEO Series GSE218110. Homo sapiens. 8 samples. Type: Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [VII]
GEO Series GSE140868. Homo sapiens. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Allelic topological centering by transcription factors drives oncogenic multi-enhancer transcriptional regulation [Micro-C]
GEO Series GSE293335. Homo sapiens. 12 samples. Type: Other.
PRC2 facilitates the regulatory topology required for poised enhancer function during pluripotent stem cell differentiation
GEO Series GSE89211. Mus musculus. 55 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.