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FIGURE 4 in History and historical DNA: Identity of Chelodina intergularis Fry, 1915 and type localities of C. intergularis and C. rugosa Ogilby, 1890
FIGURE 4. Comparison of (A) the holotype of Chelodina rugosa (AM R6256), (B) the holotype of C. intergularis (AM R6255) and (C) an individual of C. burrungandjii sensu stricto (UC 2101; redrawn from Thomson et al. 2000). Not to scale. Epidermal scutes (blue): G = gular; H = humeral; I = intergular; P = pectoral. Bony plates (black): Epi = epiplastron; Ent = entoplastron; Hyo = hyoplastron. In AM R6256 the bony sutures are visible at closer inspection through the translucent epidermal scutes. Drawings: S. Thomson.
FIGURE 2 in History and historical DNA: Identity of Chelodina intergularis Fry, 1915 and type localities of C. intergularis and C. rugosa Ogilby, 1890
FIGURE 2. Maximum Likelihood tree using near-complete mitogenomes of Chelodina species, rooted with Elseya flaviventralis. Numbers at nodes are bootstrap values and posterior probabilities from a Bayesian tree of the same topology. Asterisks indicate maximum support under both approaches. Species names do not imply validity or nomenclatural availability; accepted names of terminals on the right in bold. Sequences from type specimens are flagged; that of the C. intergularis type is highlighted in red. Codes following species names are GenBank/ENA accession numbers. For specimen/voucher tissue information, see Table 1. The mitogenomic phylogeny conflicts with subgenera and reflects a complex pattern of transspecific introgression and mitochondrial capture (Hodges 2015; Kehlmaier et al. 2019).
FIGURE 1 in History and historical DNA: Identity of Chelodina intergularis Fry, 1915 and type localities of C. intergularis and C. rugosa Ogilby, 1890
FIGURE 1. Holotype of Chelodina intergularis, Australian Museum, Sydney (AM R6255). Photos: G. Shea.
Raw data for the article "Accessing elusive σ-type cyclopropenium cation equivalents through redox gold catalysis"
<p>Raw NMR, IR, X-ray and MS data and cartesian coordinates for computation for the article "Accessing elusive σ-type cyclopropenium cation equivalents through redox gold catalysis" published in Nature Chemistry, DOI: </p> <p>https://doi.org/10.1038/s41557-024-01535-8 </p> <p>The number of the folders either correspond to compounds numbers in the article or the name of the folder is self-describing. All details concerning conditions and equipment for measurements can be found in the supporting information of the article. For convenience, the word file version of the supporting information can be found on the top of the raw data folder.</p>
Gene expression profile at both bulk and single cell level for heterogeneous cell type mixtures of A375, HAP1, THP1, HEK239FT, K562, and A549
<p>We used poly-A bulk RNA sequencing and single-cell RNA sequencing using mixtures of well-characterized purified cell lines to better understand measurement noise between technologies. A375, HAP1, THP1, HEK239FT, K562, and A549 cells were mixed in various proportions to generate four in vivo cell mixtures that mimic tissues. Mixtures of 6, 4, 2, and 1 of the cell types are respectively denoted 6ct, 4ct, 2ct, and 1ct. In the included zip, directories are labeled using this notation, followed by a list of cell types in the mixture after an underscore. In each directory, bulk and single cell count data is included.</p>
Validation of Soluble Suppression of Tumorigenesis-2, Heart-Type Fatty Acid-Binding Protein and Lipoprotein-Associated Phospholipase A2 as Tools in the Assessment of Chronic Heart Failure
<p>Chronic heart failure (CHF) is a major public health and growing problem, which imposes a relevant burden, with high prevalence and mortality rates. Therefore, reliable cardiac biomarkers are needed to identify individuals with CHF. The goal of this study was to validate the diagnostic utility of some cardiac biomarkers as tools in the assessment of CHF. This was a hospital-based case-control study where a total of 180 participants (aged 30-85 years) consisting of 100 participants with CHF and 80 apparently healthy controls were recruited for the study. Serum troponin I, sST2, H-FABP, and LP-PLA2, were measured using ELISA technique. The value of P≤ 0.05 was regarded as statistically significant. Serum levels of sST2, H-FABP, and Lp-PLA2, were significantly higher in CHF participants when compared with control (p<0.05). Lp-PLA2 had a sensitivity of 99%, specificity of 95%, H-FABP had a sensitivity of 95%, specificity of 100%, and sST2 had a sensitivity of 80%, specificity of 92%, which were all higher when compared with that of Troponin I (20% and 95% respectively).In conclusion, Lp-PLA2, H-FABP, and sST2 were higher in CHF individuals, indicating the possible presence of inflammation and myocardial injury. The markers were more sensitive and specific than troponin I, suggesting their potential use as reliable biomarkers for the assessment of chronic heart failure.</p>
Probing pre-supernova mass loss in double-peaked Type Ibc SNe from the Zwicky Transient Facility: Data and Figures
<p>Appendix B: The lightcurve plots of the other supernovae can be found in 'individual_<a href="https://github.com/kaustavkdas/doublepeaked_Ibc/tree/main/individual%20lightcurve%20plots" target="_blank" rel="noopener noreferrer">lightcurve_plots</a>'.<br>Figure 4: The comparison plots for other SNe can be found in ''r_band_comparison_plots".<br>Appendix A, Table 10/A1: The photometry data is in "<a href="https://github.com/kaustavkdas/doublepeaked_Ibc/tree/main/photometry_tables" target="_blank" rel="noopener noreferrer">photometry_tables</a>".<br>Appendix C: The spectra plots is in "<a href="https://github.com/kaustavkdas/doublepeaked_Ibc/tree/main/spectra%20collage%20figures" target="_blank" rel="noopener noreferrer">spectra_collage_figures</a>". The spectra data table behind these figures are in "<a href="https://github.com/kaustavkdas/doublepeaked_Ibc/tree/main/spectra_data_files" target="_blank" rel="noopener noreferrer">spectra_data_files</a>"<br>Appendix D, Table 11/D1: The tables for other sources are in "<a href="https://github.com/kaustavkdas/doublepeaked_Ibc/tree/main/blackbody_tables" target="_blank" rel="noopener noreferrer">blackbody_tables</a>"</p>
FIGURE 1. Leuroagathis paulbakeri Sharkey, 2017. A in Leuroagathis Sharkey, 2017 (Hymenoptera, Braconidae, Agathidinae) newly recorded from China with a detailed description of the type species
FIGURE 1. Leuroagathis paulbakeri Sharkey, 2017. A. lateral habitus; B. wings; C. dorsal head; C1. frons; D. lateral head; E. anterior head; F. lateral mesosoma; G. dorsal mesosoma without propodeum; H. dorsal mesosoma without mesonotum; I. dorsal T1, T2; J. fore tibia (arrows pointing to spines); K. mid tibia (arrows pointing to pegs); L. hind tibia (arrows pointing to pegs).
1D global and tectonic-type anisotropic Vs models
<p>The folders 'dc_*' contain 16,380 Rayleigh- and Love-phase-velocity curve pairs extracted from the global phase velocity maps, with one pair at each knot of our 2°-spaced global grid. The folder 'average_dc' includes the averaged curves over the globe and eight tectonic environments (old oceans, intermediate oceans, young oceans, back-arcs, cratons, stable platforms, Phanerozoic continents, rifts and continental hotspots). These curves are inverted for 1D azimhutally anisotropic velocity profiles of the upper mantle. The folder 'Vs models' contain the isotropic global and tectonic-type Vs models while the folder ánisotropy_profiles' shows the global radial anisotropy (R = Vsh - Vsv / Vs) and that for for each environment. Please refer to: Civiero, C., Lebedev, S., Xu, Y., Bonadio, R., & Lavoué, F. (2024). Toward tectonic‐type and global 1D seismic models of the upper mantle constrained by broadband surface waves. Bulletin of the Seismological Society of America, 114(3), 1321-1346.</p>
LC-HRMS study of Arabidopsis root metabolome in wild-type Col-0 and npr1 mutant upon in vitro inoculation with Streptomyces sp. AgN23.
<p>This archive compiles datasets related to studies of <em>Streptomyces</em> sp. AgN23 interaction with <em>Arabidopsis thaliana</em>. Ultra-high-performance liquid chromatography-high-resolution MS (UHPLC-HRMS) analyses were performed on a Q Exactive Plus quadrupole (Orbitrap) mass spectrometer, equipped with a heated electrospray probe (HESI II) coupled to a U-HPLC Ultimate 3000 RSLC system (Thermo Fisher Scientific, Hemel Hempstead, United Kigdom). For each biological sample, the RAW file obtained in ESI+ and ESI- mode were retrieved from the Xcalibur version 4.4 software and are deposited in separate sub-folders termed "RawPos" and "RawNeg". Each folder contains all the data relative to the cohort comprising "Blank" samples (n=13), Quality Check samples (pool of all samples from the cohort) "QC" (n=8), Control Col-0 plant samples "Col0CTRL" (n=6), Col-0 plant inoculated with AgN23 samples "Col0AgN23WT" (n=6), Control npr1 plant samples"NPR1CTRL" (n=6), npr1 plant inoculated with AgN23 samples "NPR1AgN23WT" (n=6). The files belonging to Negative mode bare the "neg" suffix and those belonging to Positive mode "pos" suffix, i.e. "Col0AgN23WT1_neg" and Col0AgN23WT1_pos". The details regarding samples preparation, analytic parameters and mass spectrometry, statistical treatment and visualization of the data will be made available in the publication relating to this archive. </p>
Supplementary file 1; The number, name, location, coordinates, and habitat type of each camp is described. Also included here is the quadrant assigned to the camp and the number of times it was surveyed
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fig. 1 in Taxonomic problems with the type material of Heros autochthon Günther, 1862 (Teleostei: Cichlidae)
fig. 1: Lectotype of Heros autochthon: BMNH 1961.7.7.6. A. Lateral view of specimen. B. X-ray image from the same specimen.
FIGURE 6 in Type catalogue of the Orthoptera collection in the Steinhardt Museum of Natural History, Tel Aviv University, Israel
FIGURE 6: Plesioallotype of Raggeana bodenheimeri (a, b—dorsal, lateral, labels); Holotype of Rhacocleis ayali (c, d— dorsal, lateral, labels).
FIGURE 5 in Type catalogue of the Orthoptera collection in the Steinhardt Museum of Natural History, Tel Aviv University, Israel
FIGURE 5: Holotypes of Eupholidoptera peneri (a, b—dorsal, lateral, labels), Hermoniana blondheimae (c, d—dorsal, lateral, labels), Leptophyes peneri (e, f—dorsal, lateral, labels), Phaneroptera cleomis (g, h—dorsal, lateral, labels).
FIGURE 4 in Type catalogue of the Orthoptera collection in the Steinhardt Museum of Natural History, Tel Aviv University, Israel
FIGURE 4: Holotypes of Modicogryllus aterrimus (a, b—dorsal, lateral, labels), Myrmecophilus nigricornis (c, d—dorsal, lateral, labels), Conocephalus bodenheimeri (e, f—dorsal, lateral, labels), Conocephalus peneri (g, h—dorsal, lateral, labels).
FIGURE 3 in Type catalogue of the Orthoptera collection in the Steinhardt Museum of Natural History, Tel Aviv University, Israel
FIGURE 3: Holotypes of Gryllomorpha sternlichti (a, b—dorsal, lateral, labels), Gryllopsis deminutus (c, d—dorsal, lateral, labels), Grylllpsis wahrmani (e, f—dorsal, lateral, labels), Grylllotalpa marismortui (g, h—dorsal, lateral, labels).
Artifact for InferType: A Compiler Toolkit for Implementing Efficient Constraint-Based Type Inference
<p>This is the artifact for the paper,</p> <p>InferType: A Compiler Toolkit for Implementing Efficient Constraint-Based Type Inference.</p> <p> </p> <p>It contains:</p> <p>+ infertype.tar: a saved docker image</p> <p>+ artifact.zip: this artifact including all the materials</p> <p>+ readme.md: a document for the included materials</p>
Implementation of K-Nearest Neighbor Algorithm and Gray Level Co-Occurance Matrix Method in Mushroom Type Classification
<p>This material has presented on 2nd International Conference on Advanced Research in Engineering and Technology in October 25, 2023.</p>
ITE Typing dataset
<p>A large-scale mobile typing dataset contains 46 755 participants typing sentences in English and 8661 participants in Finnish on their own mobile devices. Participants used various iPhone and Android devices with different operation system versions. The data was collected between 2019 and 2020 by the Computational Behaviour Lab of Aalto University. The user's typing operations and use of Intelligent Text Entry (ITE) methods (Autocorrection and Suggestion Bar) are labelled on a keystroke level. The dataset enables analysis of the effects of the user demographics and the usage and accuracy of ITE methods on typing. The dataset also has a separate table for all ITE corrected and predicted words e.g. for the ITE error analysis. </p> <p>Code repository: <a href="https://github.com/aalto-speech/ite-typing-dataset/">https://github.com/aalto-speech/ite-typing-dataset/</a></p> <p> </p> <p>Citation:</p> <p>Leino, Katri, Markku Laine, Mikko Kurimo, and Antti Oulasvirta. Mobile Typing with Intelligent Text Entry: A Large-Scale Dataset and Results. 2024. <a href="https://doi.org/10.21203/rs.3.rs-4654512/v1" rel="nofollow">https://doi.org/10.21203/rs.3.rs-4654512/v1</a></p> <p> </p>
Evaluation of Thermal Comfort Conditions in The Working Environments of Seasonal Agricultural Workers in Csa Koppen Climate Type
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.