Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [HiC]
GEO Series GSE182316. Homo sapiens. 8 samples. Type: Other.
A negatively-charged region within C-terminal domain maintains proper CTCF DNA binding (ATAC-Seq)
GEO Series GSE261213. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
H3K9 trimethylation in active compartments optimizes stimulus-regulated transcription by restricting usage of CTCF sites in SINE-B2 repeats [ChIP-Seq]
GEO Series GSE189971. Mus musculus. 36 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis [ChIP-seq_GATA1]
GEO Series GSE281735. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [Hi-ChIP]
GEO Series GSE175706. Danio rerio. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [CUT&RUN]
GEO Series GSE272379. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Batf pioneers the reorganization of chromatin in developing effector T cells via Ets1-dependent recruitment of Ctcf [Hi-C]
GEO Series GSE123208. Mus musculus. 10 samples. Type: Other.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiC)
GEO Series GSE185882. Mus musculus. 8 samples. Type: Other.
The lncRNA DUBR is regulated by CTCF and coordinates chromatin landscape and gene expression in hematopoietic cells [RNA-Seq]
GEO Series GSE268502. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Dissecting developmental disorders caused by CTCF mutation at R567 [Hi-C]
GEO Series GSE214687. Mus musculus. 12 samples. Type: Other.
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [BL-Hi-C]
GEO Series GSE123653. Mus musculus. 40 samples. Type: Other.
Human tandem repeat custom custom microarray ChIP-chip with anti-CTCF and anti-CTCFL/BORIS antibodies in K562 cell line
GEO Series GSE84326. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by array.
Functional analysis of CTCF sites associated with cytokine-sensing mammary-specific enhancers in the complex casein locus
GEO Series GSE95758. Mus musculus. 33 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Synergistic insulation of regulatory domains by developmental genes and clusters of CTCF sites
GEO Series GSE252080. Mus musculus. 40 samples. Type: Other.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF (ATAC-Seq)
GEO Series GSE250225. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-VC.BG3 ChIP-chip
GEO Series GSE20767. Drosophila melanogaster. 4 samples. Type: Genome binding/occupancy profiling by genome tiling array.
RNA-seq on MCF7 cells induced with sgRNA vectors targeting CTCF binding elements
GEO Series GSE124573. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [BeadChip Methylation]
GEO Series GSE182313. Homo sapiens. 8 samples. Type: Methylation profiling by array.
Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster [ChIPmentation]
GEO Series GSE181384. Mus musculus. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Canonical WNT signaling-dependent gating of MYC requires a non-canonical CTCF function at a distal binding site
GEO Series GSE184106. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.