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4,144 results for “ITS barcode”
Figures 2–5 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figures 2–5. Habitus of the Grouvellinus species collected from the Tawan Hills Park. 2: G. andrekuipersi; 3: G. nigerquadratus, sp. nov. (paratype male from Tawau River); 4: G. nigerquadratus, sp. nov. (male from Lucia River); 5: G.cruxniger, sp. nov. (paratype male from Lucia River). Scale: 1 mm.
Figure 17 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 17. Grouvellinus borneensis, sp. nov. (paratypes): (a) aedeagus, lateral; (b) aedeagus, ventral; (c) ovipositor (half), ventral. Scale bar = 0.1 mm.
Figure 16 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 16. Grouvellinus borneensis, sp. nov. (paratypes): (a) anteriodorsal aspect with pronotum and elytra; (b) ventral aspect with prosternum and mesoventrite; (c) posteriodorsal aspect with metaventrite and ventrites 1–5.
Figure 14 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 14. Grouvellinus luciaensis, sp. nov. (paratypes): (a) anteriodorsal aspect with pronotum; (b) anterioventral aspect with head and prosternum; (c) ventral aspect with prosternum and mesoventrite, (d) posterioventral aspect with metaventrite and ventrites 1–5.
Figure 12 in Additional new species of Grouvellinus Champion 1923 (Insectaı Coleopteraı Elmidae) discovered by citizen scientists and DNA barcoded in the field applying a novel MinIONbased workflow
Figure 12. Grouvellinus cruxniger, sp. nov. (paratypes): (a) anteriodorsal aspect with pronotum and elytra; (b) ventral aspect with prosternum, meso-, metaventrite, and ventrites 1–5.
FIGURES 14–20 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 14–20. Ixchela zapatai sp. nov. Male: 14–15, Habitus, lateral and dorsal views, respectively. 16, Carapace and chelicerae, frontal view. 17, Chelicerae, frontal view. 18, Chelicerae, lateral view. 19–20, Left palp, prolateral and retrolateral views, respectively. FAC, frontal apophysis of chelicerae, PAB: prolateroventral apophysis of bulb, VPP, ventrobasal protuberance of procursus. Scale bars: 0.5 mm (Fig. 17, 18), 1 mm (Figs 16, 19, 20), 2 mm (Figs 14, 15).
FIGURES 25–30. 25–28 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 25–30. 25–28, Living specimens (females) of Ixchela zapatai sp. nov. from type locality. 29–30, Temperate pine-oak forest at 2399 m.a.s.l. at the type locality (red arrow indicates the microhabitat where the specimens of I. zapatai sp. nov were collected).
FIGURES 3–9 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 3–9. Ixchela panchovillai sp. nov. Male: 3–4, Habitus, lateral and dorsal views, respectively. 5, Carapace and chelicerae, frontal view. 6, Chelicerae, frontal view. 7, Chelicerae, lateral view. 8–9, Left palp, prolateral and retrolateral views, respectively. PAB: prolateroventral apophysis of bulb, SAC: sclerotized apophysis of chelicerae, VAF: ventrodistal apophysis of femur, VPP, ventrobasal protuberance of procursus. Scale bars: 0.5 mm (Figs 6, 7), 1 mm (Figs 5, 8, 9), 2 mm (Figs 3, 4).
FIGURE 6 in New species of Silhouettea (Teleostei: Gobiidae) from Qeshm Island, Iran and the DNA barcoding of the Persian Gulf and Oman Sea gobies
FIGURE 6. Intertidal coast of Qeshm Island, Iran, type locality of Silhouettea ghazalae. Photo by R. Sadeghi.
FIGURE 4 in New species of Silhouettea (Teleostei: Gobiidae) from Qeshm Island, Iran and the DNA barcoding of the Persian Gulf and Oman Sea gobies
FIGURE 4. Silhouettea ghazalae sp. nov., PMR VP4678, holotype, Qeshm Island, Persian Gulf. Nape and predorsal region with median white spot marked: A: freshly collected specimen; B: preserved specimen. Photos by R. Sadeghi (A), M. Kovačić (B).
FIGURE 3 in New species of Silhouettea (Teleostei: Gobiidae) from Qeshm Island, Iran and the DNA barcoding of the Persian Gulf and Oman Sea gobies
FIGURE 3. Silhouettea ghazalae sp. nov. Head lateral line sensory papillae and canal pores: PMR VP4678, holotype, female, 27.35 + 6.29 mm, Qeshm Island, Persian Gulf. Terminology in text. Drawing by M. Kovačić.
Supplementary data for Cariou et al (2020, Molecular Ecology Resources, "How consistent is RAD-seq divergence with DNA-barcode based clustering in insects?")
<p>This dataset accompanies a paper by Cariou et al, to be published in Molecular Ecology Resources, where we assessed in 92 insect species if the genetic clustering of specimens into species like units, on the basis of mitochondrial DNA, was consistent with genome wide divergence, as estimated by RAD-seq data. The present repository includes: (1) a detailed description of the bioinformatic analysis indicating which programs were used, together with parameter values, (2) the raw RAD-seq data following demultiplexing, (3) the consensus sequences of all RAD loci for all specimens, and (4) large tables indicating genetic distances at all RAD loci for all species.</p>
Figure 3 in DNA Barcodes Reveal High Genetic Diversity in Philippine Fruit Bats
Figure 3. COI ML tree for Pteropodidae dataset using GTR+G+I model of substitution. Bootstrap supports 50% or greater are shown in the nodes. Clades with more than one sequence have been compressed. Labels indicate scientific name and number of sequences for that taxon in the clade. Scientific names in bold text indicate known Philippine endemic species. Colored shapes indicate the geographic origin of the sequences from Genbank and BOLD: purple – Southeast Asia, red – East Asia, blue – South Asia, white – Middle East, yellow – Africa, and black – Oceania. Red lines indicate sequences generated by this study. Scale indicates five nucleotide substitutions per 100 nucleotides.
Figure 2 in DNA Barcodes Reveal High Genetic Diversity in Philippine Fruit Bats
Figure 2. COI NJ tree for Pteropodidae dataset using K2P model of substitution. Bootstrap supports 50% or greater are shown in the nodes. Clades with more than one sequence have been compressed. Labels indicate scientific name and number of sequences for that taxon in the clade. Red lines indicate Philippine pteropodid sequences generated in this study. Scientific names in bold text indicate known Philippine endemic species. Colored shapes indicate the geographic origin of the sequences from Genbank and BOLD: purple – Southeast Asia, red – East Asia, blue – South Asia, white – Middle East, yellow – Africa, and black – Oceania. Scale indicates two nucleotide substitutions per 100 nucleotides.
FIGURE 3 in DNA barcodes and morphology confirm a new species of Rheocricotopus (Psilocricotopus) orientalis group (Diptera: Chironomidae)
FIGURE 3. Neighbor joining tree for four species of the Rheocricotopus (Psilocricotopus) orientalis group based on K2P distance in DNA barcodes. Numbers on branches represent bootstrap support (>70%) based on 1000 replicates; scale equals K2P genetic distance.
FIGURE 1 in DNA barcodes and morphology confirm a new species of Rheocricotopus (Psilocricotopus) orientalis group (Diptera: Chironomidae)
FIGURE 1. Body photographs of the Rheocricotopus (Psilocricotopus) orientalis group, adult males in ethanol. A. Rheocricotopus calviculus Wang et Saether, 2001; B. Rheocricotopus kongi sp. n.; C. Rheocricotopus orientalis Wang, 1995; D. Rheocricotopus villiculus Wang et Saether, 2001.
FIGURES 7–14 in Taxonomy of some Boreoheptagyiini Brundin (Diptera: Chironomidae Diamesinae) from the mountains of Central Asia and the Middle East, with description and DNA barcoding of new taxa
FIGURES 7–14. Palatovia lorestanica sp. nov., male. 7, hypopygium in dorsal view; 8, hypopygium in ventral view; 9, wing; 10, antenna; 11, head; 12, transverse sternapodema and aedeagal lobes; 13, thorax in lateral view; 14, gonostylus in ventral view.
FIGURES 1–6 in Taxonomy of some Boreoheptagyiini Brundin (Diptera: Chironomidae Diamesinae) from the mountains of Central Asia and the Middle East, with description and DNA barcoding of new taxa
FIGURES 1–6. Palatovia lorestanica sp. nov., male. 1, lobe of pronotum (straightened); 2, anterior part of mesonotum in dorsal view; 3, median volsella and aedeagal lobe in ventral view; 4, hypopygium in dorsal view; 5–6, subapical part of gonostylus. MVo—median volsella; Al—aedeagal lobe. Scale bars: Figs. 1, 4—100 μm; Fig. 2—200 μm; Figs. 3, 5–6—50 μm.
FIGURES 22–27 in Taxonomy of some Boreoheptagyiini Brundin (Diptera: Chironomidae Diamesinae) from the mountains of Central Asia and the Middle East, with description and DNA barcoding of new taxa
FIGURES 22–27. Boreoheptagyia joeli sp. nov. (22–26) and B. phoenicia Moubayed (27), males. 22, thorax in lateral view; 23–24, hypopygium in dorsal view; 25, antenna; 26, middle part of hypopygium without tergite IX; 27, gonostylus.
FIGURE 46 in Taxonomy of some Boreoheptagyiini Brundin (Diptera: Chironomidae Diamesinae) from the mountains of Central Asia and the Middle East, with description and DNA barcoding of new taxa
FIGURE 46. Bayesian tree based on mitochondrion COI gene for available members of the tribe Boreoheptagiini. Pagastia orientalis (Tshernovskij) (tribe Diamesini) was used as outgroup to root the tree. Bayesian posterior probabilities (PP) are given above tree nodes and bootstrap support values found in the ML analysis are shown below nodes. Specimens obtained in this study are in bold.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.