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1,249 results for “R data”
Data from: strap: an R package for plotting phylogenies against stratigraphy and assessing their stratigraphic congruence
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Data from: Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): comparative analysis of global accessions and Senegalese landraces
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Data from: incR: a new R package to analyse incubation behaviour
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Raw in vitro screening data and R scripts for: A Bayesian method for population-wide cardiotoxicity hazard and risk characterization using an in vitro human model
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Data and R code for What you see is where you go: visibility influences movement decisions of a forest bird navigating a 3D structured matrix
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Data from: pcadapt: an R package to perform genome scans for selection based on principal component analysis
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Data from: RClone: a package to identify MultiLocus Clonal Lineages and handle clonal datasets in R
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The performance of permutations and exponential random graph models when analysing animal networks (R code and data)
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Data and R scripts from: Which factors determine the long-term effect of poor early-life nutrition? A meta-analytic review
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Data from: paco: implementing Procrustean Approach to Cophylogeny in R
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Data from: Posterior predictive checks of coalescent models: P2C2M, an R package
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Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data
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Evidence that male sea lamprey increase pheromone release after perceiving a competitor: raw data, R-code, R analyses
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Data from: ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
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International Satellite Cloud Climatology Project (ISCCP) Stage D1 3-Hourly Cloud Products - Revised Algorithm in Hierarchical Data Format
ISCCP_D1_1 is the International Satellite Cloud Climatology Project (ISCCP) Stage D1 3-Hourly Cloud Products - Revised Algorithm data set in Hierarchical Data Format. This data set contains 3-hourly, 280 KM equal-area grid data from various polar and geostationary satellites. The Gridded Cloud Product contents are spatial averages of DX quantities and statistical summaries, including properties of cloud types. Satellites are merged into a global grid. Atmosphere and surface properties from TOVS are appended. Data collection for this data set is complete. ISCCP, the first project of the World Climate Research Program (WCRP), was established in 1982 (WMO-35 1982, Schiffer and Rossow 1983) to: produce a global, reduced resolution, calibrated and normalized radiance data set containing basic information on the properties of the atmosphere from which cloud parameters can be derived; stimulate and coordinate basic research on techniques for inferring the physical properties of clouds from the condensed radiance data set and to apply the resulting algorithms to derive and validate a global cloud climatology for improving the parameterization of clouds in climate models; and promote research using ISCCP data that contributes to improved understanding of the Earth's radiation budget and hydrological cycle. Starting in 1983 an international group of institutions collected and analyzed satellite radiance measurements from up to five geostationary and two polar orbiting satellites to infer the global distribution of cloud properties and their diurnal, seasonal and interannual variations. The primary focus of the first phase of the project (1983-1995) was the elucidation of the role of clouds in the radiation budget (top of the atmosphere and surface). In the second phase of the project (1995 onward) the analysis also concerns improving understanding of clouds in the global hydrological cycle. The ISCCP analysis combined satellite-measured radiances (Stage B3 data, Schiffer and Rossow 1985), Rossow et al. 1987) with the TOVS atmospheric temperature-humidity and ice/snow correlative data sets to obtain information about clouds and the surface. The analysis method first determined the presence of absence of clouds in each individual image pixel and retrieves the radiometric properties of the cloud for each cloudy pixel and of the surface for each clear pixel. The pixel analysis was performed separately for each satellite radiance data set and the results were reported in the Stage DX data product, which had a nominal resolution of 30 km and 3 hours. The Stage D1 product was produced by summarizing the pixel-level results every 3 hours on an equal-area map with 280 km resolution and merging the results from separate satellites with the atmospheric and ice/snow data sets to produce global coverage at each time. The Stage D2 data product was produced by averaging the Stage D1 data over each month, first at each of the eight three hour time intervals and then over all time intervals.
SPURS-2 research vessel along track WAMOS wave radar data for the second R/V Revelle cruise in the E. Tropical Pacific
The SPURS (Salinity Processes in the Upper Ocean Regional Study) project is NASA-funded oceanographic process study and associated field program that aim to elucidate key mechanisms responsible for near-surface salinity variations in the oceans. The project involves two field campaigns and a series of cruises in regions of the Atlantic and Pacific Oceans exhibiting salinity extremes. SPURS employs a suite of state-of-the-art in-situ sampling technologies that, combined with remotely sensed salinity fields from the Aquarius/SAC-D, SMAP and SMOS satellites, provide a detailed characterization of salinity structure over a continuum of spatio-temporal scales. The SPURS-2 campaign involved two month-long cruises by the R/V Revelle in August 2016 and October 2017 combined with complementary sampling on a more continuous basis over this period by the schooner Lady Amber. Focused around a central mooring located near 10N,125W, the objective of SPURS-2 was to study the dynamics of the rainfall-dominated surface ocean at the western edge of the eastern Pacific fresh pool subject to high seasonal variability and strong zonal flows associated with the North Equatorial Current and Countercurrent. The WaMoS wave radar instrument was available during the second R/V Revelle cruise of SPURS-2. WaMoS is a radar-based wave and surface current monitoring system providing wave field imagery and station time series or along track data series for key wave parameter in near near-real time. The single resulting SPURS-2 WaMos data file contains along track wave measurement from the R/V Revelle over the duration of this cruise (5 Oct. to 16 Nov. 2017) for the following essential wave field parameters: wave period, wave length, and wave direction, as well as surface current speed and direction.
SPURS-2 Controlled Flux Technique (CFT) data for the E. Tropical Pacific field campaign R/V Revelle cruises
The SPURS (Salinity Processes in the Upper Ocean Regional Study) project is NASA-funded oceanographic process study and associated field program that aim to elucidate key mechanisms responsible for near-surface salinity variations in the oceans. The project involves two field campaigns and a series of cruises in regions of the Atlantic and Pacific Oceans exhibiting salinity extremes. SPURS employs a suite of state-of-the-art in-situ sampling technologies that, combined with remotely sensed salinity fields from the Aquarius/SAC-D, SMAP and SMOS satellites, provide a detailed characterization of salinity structure over a continuum of spatio-temporal scales. The SPURS-2 campaign involved two month-long cruises by the R/V Revelle in August 2016 and October 2017 combined with complementary sampling on a more continuous basis over this period by the schooner Lady Amber. Focused around a central mooring located near 10N,125W, the objective of SPURS-2 was to study the dynamics of the rainfall-dominated surface ocean at the western edge of the eastern Pacific fresh pool subject to high seasonal variability and strong zonal flows associated with the North Equatorial Current and Countercurrent. The Controlled Flux Technique (CFT) is a system for measuring the net heat transfer velocity and turbulent kinetic energy (TKE) dissipation at the ocean surface, and is a useful tool for studying the turbulence generated at the ocean surface by the impact of raindrops. CFT was employed during both SPURS-2 Revelle cruises. It involves a laser heating a small patch of water on the ocean surface, and an infrared imaging camera then tracking the resulting thermal decay. This decay is known to be proportional to the dissipation of TKE at the water surface, which in turn can be used to scale the transfer velocity for the net heat flux. SPURS2 CFT data take the form of a series of .raw video files each with corresponding .met text header files containing the associated file metadata. The CFT data was recorded at 15 frames per second (fps) during the first Revelle cruise in 2016, and at 25 fps during the second in 2017. Matlab CFT reader software are provided by UW/APL and distributed here with the CFT data files.
SPURS-2 underway surface pCO2, DIC and pH data for the E. Tropical Pacific field campaign R/V Revelle cruises
The SPURS (Salinity Processes in the Upper Ocean Regional Study) project is a NASA-funded oceanographic process study and associated field program that aim to elucidate key mechanisms responsible for near-surface salinity variations in the oceans. The project is comprised of two field campaigns and a series of cruises in regions of the Atlantic and Pacific Oceans exhibiting salinity extremes. SPURS employs a suite of state-of-the-art in-situ sampling technologies that, combined with remotely sensed salinity fields from the Aquarius/SAC-D, SMAP and SMOS satellites, provide a detailed characterization of salinity structure over a continuum of spatio-temporal scales. The SPURS-2 campaign involved two month-long cruises by the R/V Revelle in August 2016 and October 2017 combined with complementary sampling on a more continuous basis over this period by the schooner Lady Amber. Focused around a central mooring located near 10N,125W, the objective of SPURS-2 was to study the dynamics of the rainfall-dominated surface ocean at the western edge of the eastern Pacific fresh pool subject to high seasonal variability and strong zonal flows associated with the North Equatorial Current and Countercurrent. During both Revelle cruises, continuous measurements of the partial pressure of CO2 (pCO2), dissolved inorganic carbon (DIC), and pH at surface (0m) and 5m depths were made on water pumped continuously from the Salinity Snake and the ship's intake port. In addition to these measurements, observational data from the salinity snake and thermosalinograph also include water temperature and salinity time series at the same depths. The temporal resolution of the observations range from 3 seconds (pH) to 3 minutes (DIC). All pCO2 and associated underway data comprising this dataset are in netCDF file format with standards compliant metadata. Due to issues with the quality of the 2016 underway data, only the data file for the 2017 cruise is available.
SPURS-2 research vessel Underway CTD (uCTD) data for the E. Tropical Pacific R/V Revelle cruises
The SPURS (Salinity Processes in the Upper Ocean Regional Study) project is a NASA-funded oceanographic process study and associated field program that aim to elucidate key mechanisms responsible for near-surface salinity variations in the oceans. The project is comprised of two field campaigns and a series of cruises in regions of the Atlantic and Pacific Oceans exhibiting salinity extremes. SPURS employs a suite of state-of-the-art in-situ sampling technologies that, combined with remotely sensed salinity fields from the Aquarius/SAC-D, SMAP and SMOS satellites, provide a detailed characterization of salinity structure over a continuum of spatio-temporal scales. The SPURS-2 campaign involved two month-long cruises by the R/V Revelle in August 2016 and October 2017 combined with complementary sampling on a more continuous basis over this period by the schooner Lady Amber. Focused around a central mooring located near 10N,125W, the objective of SPURS-2 was to study the dynamics of the rainfall-dominated surface ocean at the western edge of the eastern Pacific fresh pool subject to high seasonal variability and strong zonal flows associated with the North Equatorial Current and Countercurrent. An underway-CTD (uCTD) is a towed profiling CTD instrument providing salinity and temperature observations from the surface to 500m while underway at up to 12 kts. A total of 262 and 501 uCTD casts were performed during the first and second Revelle cruises respectively. uCTD data files (1 per cruise) are in netCDF format and each contain the observational data for multiple deployments, binned in 6 or 8m depth intervals.
SPURS-2 Towed surface salinity profile (SSP) data for the E. Tropical Pacific R/V Revelle cruises
The SPURS (Salinity Processes in the Upper Ocean Regional Study) project is a NASA-funded oceanographic process study and associated field program that aim to elucidate key mechanisms responsible for near-surface salinity variations in the oceans. The project is comprised of two field campaigns and a series of cruises in regions of the Atlantic and Pacific Oceans exhibiting salinity extremes. SPURS employs a suite of state-of-the-art in-situ sampling technologies that, combined with remotely sensed salinity fields from the Aquarius/SAC-D, SMAP and SMOS satellites, provide a detailed characterization of salinity structure over a continuum of spatio-temporal scales. The SPURS-2 campaign involved two month-long cruises by the R/V Revelle in August 2016 and October 2017 combined with complementary sampling on a more continuous basis over this period by the schooner Lady Amber. Focused around a central mooring located near 10N,125W, the objective of SPURS-2 was to study the dynamics of the rainfall-dominated surface ocean at the western edge of the eastern Pacific fresh pool subject to high seasonal variability and strong zonal flows associated with the North Equatorial Current and Countercurrent. The towed Surface Salinity Profiler (SSP) platform is a converted paddleboard with a keel and surfboard outrigger that is tethered to the ship and skims the sea surface beyond the ships wake. Below the paddleboard are salinity and temperature sensors at depths of 10, 30, 50 and 100cm, and microstructure sensors that measure turbulence. The SSP was deployed 19 times throughout the first SPURS-2 cruise, totaling over 200 hours of measurements, and a further 15 times during the 2017 cruise. SSP deployment is most informative when there is a rain event leading to near-surface ocean stratification. The SSP then measures how the ocean changes over the periods before, during, and after rain, and how rainwater mixes into the ocean during recovery. All SSP data files are in netCDF format with standards compliant metadata.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.