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FIGURE 7 in Beauty in the eye of the beholder: a new species of gecko (Diplodactylidae Lucasium) from inland north Queensland, Australia
FIGURE 7. Lucasium iris sp. nov. habitat, showing mixed open woodland on low sandstone ranges; Gilberton Station. Photo: Stephen M. Zozaya.
FIGURE 1 in Beauty in the eye of the beholder: a new species of gecko (Diplodactylidae Lucasium) from inland north Queensland, Australia
FIGURE 1. Main map (A): the known distribution of Lucasium iris sp. nov. The black circle has a 15 km radius around the centroid of the point records of the new species. Modelled area of occupancy (AOO) is shown (dark green), based on 2 km grid squares (see text). The Regional Ecosystems (REs) that underpin the AOO are shown as light green crosshatching, but are clipped to exclude areas where extensive surveying has failed to locate L. iris sp. nov. Top inset (B): broad location within Australia and area enlarged in bottom inset map. Bottom inset (C): regional context for main map (A). Bold black crosses show previous records of Lucasium immaculatum and the bold red cross shows the location of SMZ0452 [MT720722] and QM J96903 [MT720723] (genotyped L. immaculatum) and pre-existing museum specimen QM J60287, discussed in this paper. Some relevant towns and locations are also shown on the inset map. EIU = Einasleigh Uplands bioregion; GUP = Gulf Plains bioregion.
FIGURE 4 in Beauty in the eye of the beholder: a new species of gecko (Diplodactylidae Lucasium) from inland north Queensland, Australia
FIGURE 4. Lucasium iris sp. nov. Holotype (QM J94606), showing contrasting black or very dark brown reticulations over pale blue to silver iris. Photo: Stephen M. Zozaya.
FIGURE 6 in Beauty in the eye of the beholder: a new species of gecko (Diplodactylidae Lucasium) from inland north Queensland, Australia
FIGURE 6. Comparison of Lucasium iris sp. nov. to regionally sympatric ground-dwelling geckos, which could be confused with L. iris sp. nov. Lucasium iris sp. nov. unsampled female (A); Lucasium steindachneri, Gilberton Station (B); Lucasium immaculatum QM J96903, Littleton NP (C); Diplodactylus vittatus, Blackbraes NP (D); Diplodactylus platyurus, Gilberton Station (E); Heteronotia binoei, Gilberton Station (F). Photos: Stephen M. Zozaya (A, C, F); Justin M. Wright (B); Eric Vanderduys (D, E).
FIGURE 3 in Beauty in the eye of the beholder: a new species of gecko (Diplodactylidae Lucasium) from inland north Queensland, Australia
FIGURE 3. Lucasium iris sp. nov., showing typical pattern of a broad, regular to zigzag-edged, pale vertebral stripe with irregular small spots on the lateral surfaces. Holotype QM J96406, female (A); paratype QM J95526, female (B); paratype QM J96407, male (C); paratype QM J88147, subadult male (D); SMZ1327, male, showing unpatterned regenerated tail (E); unsampled female (F). Photos: Stephen M. Zozaya (A, C, E, F); Eric Vanderduys (B, D).
Data from: Natural selection favors a larger eye in response to increased competition in natural populations of a vertebrate
1.Eye size varies notably across taxa. Much work suggests that this variation is driven by contrasting ecological selective pressures. However, evaluations of the relationship between ecological factors and shifts in eye size have largely occurred at the macroevolutionary scale. Experimental tests in nature are conspicuously absent. 2.Trinidadian killifish, Rivulus hartii, are found across fish communities that differ in predation intensity. We recently showed that increased predation is associated with the evolution of a smaller eye. Here, we test how divergent predatory regimes alter the trajectory of eye size evolution using comparative mark‐recapture experiments in multiple streams. 3.We found that increases in eye size are associated with enhanced survival, irrespective of predation intensity. More importantly, eye size is associated with enhanced growth in communities that lack predators, while this trend is absent when predators are present. 4.Such results argue that increased competition for food in sites that lack predators is the key driver of eye size evolution.
Data from: 'Fix me another marguerite!': species delimitation in a group of intensively hybridising lineages of ox-eye daisies (Leucanthemum Mill., Compositae-Anthemideae)
Delineating species boundaries in the framework of the multi-species coalescent (MSC) proves to be a reliable, objective, and reproducible method in an increasing number of studies. However, the underlying model assumes the lack of gene flow after speciation; an assumption which may be frequently violated in plant evolution. The present study evaluates the robustness of currently available species delimitation methods implemented in BEAST (BFD, BFD, and DISSECT) in the closely-knit ox-eye daisy group around Leucanthemum ageratifolium Pau. Comprising five taxa being allopatrically distributed between northern Spain and southern Italy this study group shows signs of hybridisation with the widespread and co-distributed species Leucanthemum vulgare (Vaill.) Lam. to various extent. As expected, our empirical analyses based on both AFLP fingerprinting and sequence data demonstrate that the robustness of species delimitation results is considerably influenced by the intensity of hybridisation among species and the number of hybrid individuals included. Therefore, we set up a methodological pipeline with a first step of identification and subsequent removal of individuals showing admixed genetic patterns caused by actual interbreeding using AFLP-fingerprint and morphometric data, followed by application of different Bayesian MSC species delimitation methods based on the remnant individuals using both AFLP-fingerprint and sequence data (four nuclear markers, five concatenated intergenic spacer regions of the plastid genome). The results argue for acknowledgement of Leucanthemum laciniatum, L. legraeanum, and L. ligusticum as independent species, show the close relationship of L. ageratifolium, L. monspeliense, and L. vulgare, and give rise to the description of three nothospecies new to science.
Data from: Beauty in the eyes of the beholders: color vision is tuned to mate preference in the Trinidadian guppy (Poecilia reticulata)
A broad range of animals use visual signals to assess potential mates, and the theory of sensory exploitation suggests variation in visual systems drives mate preference variation due to sensory bias. Trinidadian guppies (Poecilia reticulata), a classic system for studies of the evolution of female mate choice, provide a unique opportunity to test this theory by looking for co-variation in visual tuning, light environment, and mate preferences. Female preference co-evolves with male coloration, such that guppy females from 'low predation' environments have stronger preferences for males with more orange/red coloration than do females from 'high predation' environments. Here we show that color vision also varies across populations, with 'low' predation guppies investing more of their color vision to detect red/orange coloration. In independently colonized watersheds, guppies expressed higher levels of both LWS-1 and LWS-3 (the most abundant LWS opsins) in 'low predation' populations than 'high predation' populations at a time that corresponds to differences in cone cell abundance. We also observed that the frequency of a coding polymorphism differed between high and low predation populations. Together this shows that the variation underlying preference could be explained by simple changes in expression and coding of opsins, providing important candidate genes to investigate the genetic basis of variation in this model system.
Data from: Male eyespan size is associated with meiotic drive in wild stalk-eyed flies (Teleopsis dalmanni)
This study provides the first direct evidence from wild populations of stalk-eyed flies to support the hypothesis that male eyespan is a signal of meiotic drive. Several stalk-eyed fly species are known to exhibit X-linked meiotic drive. A recent QTL analysis in Teleopsis dalmanni, found a potential link between variation in male eyespan, a sexually selected ornamental trait, and the presence of meiotic drive. This was based on laboratory populations subject to artificial selection for male eyespan. In this study we examined the association between microsatellite markers and levels of sex ratio bias (meiotic drive) in 12 wild T. dalmanni populations. We collected two data sets: a) brood sex ratios of wild-caught males mated to standard laboratory females, and b) variation in a range of phenotypic traits associated with reproductive success of wild- caught males and females. In each case, we typed individuals for 8 X-linked microsatellite markers, including several that previously were shown to be associated with male eyespan and meiotic drive. We found that one microsatellite marker was very strongly associated with meiotic drive whilst a second showed a weaker association. We also found that, using both independent datasets, meiotic drive was strongly associated with male eyespan, with smaller eyespan males being associated with more female-biased broods. These results suggest that mate preference for exaggerated male eyespan allows females to avoid mating with males carrying the meiotic drive gene and is thus a potential mechanism for the maintenance and evolution of female mate preference.
Data from: Through the eye of a Gobi khulan – application of camera collars for ecological research of far-ranging species in remote and highly variable ecosystems
The Mongolian Gobi-Eastern Steppe Ecosystem is one of the largest remaining natural drylands and home to a unique assemblage of migratory ungulates. Connectivity and integrity of this ecosystem are at risk if increasing human activities are not carefully planned and regulated. The Gobi part supports the largest remaining population of the Asiatic wild ass (Equus hemionus; locally called "khulan"). Individual khulan roam over areas of thousands of square kilometers and the scale of their movements is among the largest described for terrestrial mammals, making them particularly difficult to monitor. Although GPS satellite telemetry makes it possible to track animals in near-real time and remote sensing provides environmental data at the landscape scale, remotely collected data also harbors the risk of missing important abiotic or biotic environmental variables or life history events. We tested the potential of animal born camera systems ("camera collars") to improve our understanding of the drivers and limitations of khulan movements. Deployment of a camera collar on an adult khulan mare resulted in 7,881 images over a one-year period. Over half of the images showed other khulan and 1,630 images showed enough of the collared khulan to classify the behaviour of the animals seen into several main categories. These khulan images provided us with: i) new insights into important life history events and grouping dynamics, ii) allowed us to calculate time budgets for many more animals than the collared khulan alone, and iii) provided us with a training dataset for calibrating data from accelerometer and tilt sensors in the collar. The images also allowed to document khulan behaviour near infrastructure and to obtain a day-time encounter rate between a specific khulan with semi-nomadic herders and their livestock. Lastly, the images allowed us to ground truth the availability of water by: i) confirming waterpoints predicted from other analyses, ii) detecting new waterpoints, and iii) compare precipitation records for rain and snow from landscape scale climate products with those documented by the camera collar. We discuss the added value of deploying camera collars on a subset of animals in remote, highly variable ecosystems for research and conservation.
Data from: Keeping an eye on coloration: ecological correlates of the evolution of pitcher traits in the genus Nepenthes (Caryophyllales)
Nepenthes is a genus of carnivorous pitcher plants with high intra- and interspecific morphological diversity. Many species produce dimorphic pitchers, and the relative production rate of the two morphs varies interspecifically. Despite their likely ecological importance to the plants, little is known about the selective context under which various pitcher traits have evolved. This is especially true of color-related traits, which have not been examined in a phylogenetic context. Using field observations of one polymorphic species (N. gracilis) and phylogenetic comparative analysis of 85 species across the genus, we investigate correlations between color polymorphism and ecological factors including altitude, light environment, and herbivory. In N. gracilis, color does not correlate to amount of prey-capture, but red pitchers experience less herbivory. Throughout the genus, color polymorphism with redder lower pitchers appears to be evolutionarily favored. We found a lack of phylogenetic signal for most traits, either suggesting that most traits are labile or reflecting the uncertainty regarding the underlying tree topology. This work highlights ecological correlates of the vast phenotypic diversity of this group of tropical plants. We point to a need for future work examining herbivores of Nepenthes and experimental investigations on color polymorphism.
Data from: What does body size mean, from the "plant's eye view"?
Alternative metrics exist for representing variation in plant body size, but the vast majority of previous research for herbaceous plants has focused on dry mass. Dry mass provides a reasonably accurate and easily measured estimate for comparing relative capacity to convert solar energy into stored carbon. However, from a "plant's eye view", its experience of its local biotic environment of immediate neighbors (especially when crowded) may be more accurately represented by measures of "space occupancy" (S–O) recorded in situ—rather than dry mass measured after storage in a drying oven. This study investigated relationships between dry mass and alternative metrics of S–O body size for resident plants sampled from natural populations of herbaceous species found in Eastern Ontario. Plant height, maximum lateral canopy extent, and estimated canopy area and volume were recorded in situ (in the field)—and both fresh and dry mass were recorded in the laboratory—for 138 species ranging widely in body size and for 20 plants ranging widely in body size within each of 10 focal species. Dry mass and fresh mass were highly correlated (r2 > .95) and isometric, suggesting that for some studies, between-species (or between-plant) variation in water content may be unimportant and fresh mass can therefore substitute for dry mass. However, several relationships between dry mass and other S–O body size metrics showed allometry—that is, plants with smaller S–O body size had disproportionately less dry mass. In other words, they have higher "body mass density" (BMD) — more dry mass per unit S–O body size. These results have practical importance for experimental design and methodology as well as implications for the interpretation of "reproductive economy"—the capacity to produce offspring at small body sizes—because fecundity and dry mass (produced in the same growing season) typically have a positive, isometric relationship. Accordingly, the allometry between dry mass and S–O body size reported here suggests that plants with smaller S–O body size—because of higher BMD—may produce fewer offspring, but less than proportionately so; in other words, they may produce more offspring per unit of body size space occupancy.
Data from: In the eye of the beholder: visual mate choice lateralization in a polymorphic songbird
Birds choose mates on the basis of colour, song and body size, but little is known about the mechanisms underlying these mating decisions. Reports that zebra finches prefer to view mates with the right eye during courtship, and that immediate early gene expression associated with courtship behaviour is lateralized in their left hemisphere suggest that visual mate choice itself may be lateralized. To test this hypothesis, we used the Gouldian finch, a polymorphic species in which individuals exhibit strong, adaptive visual preferences for mates of their own head colour. Black males were tested in a mate-choice apparatus under three eye conditions: left-monocular, right-monocular and binocular. We found that black male preference for black females is so strongly lateralized in the right-eye/left-hemisphere system that if the right eye is unavailable, males are unable to respond preferentially, not only to males and females of the same morph, but also to the strikingly dissimilar female morphs. Courtship singing is consistent with these lateralized mate preferences; more black males sing to black females when using their right eye than when using their left. Beauty, therefore, is in the right eye of the beholder for these songbirds, providing, to our knowledge, the first demonstration of visual mate choice lateralization.
Data from: Non-uniform evolutionary response of gecko eye size to changes in diel activity patterns
Geckos feature a large range of eye sizes, but what drives this phenotypic diversity is currently unknown. Earlier studies point towards diel activity patterns (DAP) and locomotory mode, but phylogenetic comparative studies in support of the proposed adaptive mode of eye evolution are lacking. Here we test the hypothesis of DAP as the driver of eye size evolution with a dataset on 99 species of gecko. Results from phylogenetic generalized least square analysis (PGLS) and multivariate model-fitting reveal smaller eyes in diurnal geckos consistent with different phenotypic optima. However, Bayesian analyses of selective regime shifts demonstrate that only 2 of 9 transitions from nocturnal to diurnal activity are coupled with decreases in eye size, and 2 other regime shifts are not associated with DAP transitions. This non-uniform evolutionary response suggests that eye size is not the only functionally relevant variable. Evolutionary adaptations may therefore include different combinations of several traits (e.g., photoreceptors), all with the same functional outcome. Our results further demonstrate that DAP only partially explains eye size diversity in geckos. As open habitats favor the evolution of large eyes while obstructed habitats favor small eyes, the degree of habitat clutter emerges as another potential axis of eye diversification.
Data from: Geographic variation in morphology of Dark-eyed Juncos and implications for population divergence
Geographic variation in morphology that develops among closely related populations can help drive genetic divergence, and eventually speciation, when those morphological traits are the basis for social interactions that influence reproduction. The North American Dark-eyed junco (Junco hyemalis) complex is an interesting case in speciation. The numerous subspecies have distinct breeding ranges and unique plumage coloration, but based on the presence of hybrid populations and recent genetic data, can be considered to belong to a single species. Research within various populations of juncos has shown first, that wing length and the amount of white on the tail feathers ("tail white") influence an individual's dominance status and mating success, and second, that these traits can undergo rapid evolution when social and environmental conditions change. Here, I used museum specimens to examine tail white and body size, as measured by wing and tail length, of males and females within and among 13 geographically distinct Dark-eyed Junco subspecies. I documented geographic variation of mean values for each of these morphological traits, as well as patterns of trait co-variation and the degree of sexual dimorphism. I discuss these results in relation to what they may indicate about the generation and maintenance of divergence among the subspecies.
Data from: Female Dark-eyed Juncos (Junco hyemalis thurberi) produce male-like song in a territorial context during the early breeding season
Reports of female song, once considered a rarity, have recently increased across a variety of avian taxa. Females of many species can be induced to produce male-like song with exogenous testosterone, but observations of female song in free-living birds remain limited by incomplete sampling of females. Here, we report three independent observations of female dark-eyed juncos (Junco hyemalis) producing male-like song early in the breeding season (i.e. post-territory establishment, pre-nesting) in a recently established non-migratory, urban population. To elicit song, we presented 17 free-living junco pairs with a live, caged female conspecific. Three unique females responded to our trials by diving at the intruding female, chasing their (male) mate, fanning their tail feathers, and singing a trilled song similar in structure to male long-range (broadcast) song. We compared male and female songs quantitatively and found that the two sexes were statistically similar in many spectral and temporal characteristics, but female songs had significantly lower minimum and peak frequencies than males. This result is particularly surprising, as males in this urban population are known to sing at a significantly higher minimum frequency than males in a nearby montane population. Both the seasonal and social context in which these songs were observed suggest a potential function for female song in mate guarding and polygyny prevention, but more data are needed to test this hypothesis. Whether female song is common in all dark-eyed juncos during the early breeding season or if it is restricted to this particular urban and non-migratory population remains an important question for future research.
Data from: Rapid evolution of asymmetric reproductive incompatibilities in stalk-eyed flies
The steps by which isolated populations acquire reproductive incompatibilities remain poorly understood. One potentially important process is postcopulatory sexual selection because it can generate divergence between populations in traits that influence fertilization success after copulation. Here we present a comprehensive analysis of this form of reproductive isolation by conducting reciprocal crosses between variably diverged populations of stalk-eyed flies (Teleopsis dalmanni). First, we measure seven types of reproductive incompatibility between copulation and fertilization. We then compare fertilization success to hatching success to quantify hybrid inviability. Finally, we determine if sperm competition acts to reinforce or counteract any incompatibilities. We find evidence for multiple incompatibilities in most crosses, including failure to store sperm after mating, failure of sperm to reach the site of fertilization, failure of sperm to fertilize eggs, and failure of embryos to develop. Local sperm have precedence over foreign sperm, but this effect is due mainly to differences in sperm transfer and reduced hatching success. Crosses between recently diverged populations are asymmetrical with regard to the degree and type of incompatibility. Because sexual conflict in these flies is low, postcopulatory sexual selection, rather than antagonistic coevolution, likely causes incompatibilities due to mismatches between male and female reproductive traits.
Data from: The cat-eyed snakes of Madagascar: phylogeny and description of a new species of Madagascarophis (Serpentes: Lamprophiidae) from the tsingy of Ankarana
The cat-eyed snakes of the genus Madagascarophis are among the most commonly encountered snake species in Madagascar. Yet despite their broad distribution and frequent occurrence in human-disturbed habitat, Madagascarophis still contains unrecognized species diversity. Here, we describe a new species of Malagasy cat-eyed snake from a specimen found in the tsingy karst system of Ankarana in northern Madagascar. Using multiple loci from all currently described species, including the never-before-sequenced M. ocellatus, we delimit a new species and also determine its placement within the genus in a Bayesian coalescent framework, using BPP and *BEAST, respectively. Our results indicate that molecular data are sufficient to delimit this new taxon. These data also support its placement as the sister taxon to the recently described M. fuchsi which is endemic to the Montagne des Français karst massif also in northern Madagascar. We also provide a morphological description of this new snake species, which can be readily diagnosed based on external morphological characters, and include a species identification key for the entire genus based on external morphology.
Data from: Estimating age and age class of harvested hog deer from eye lens mass using frequentist and Bayesian methods
Estimation of the age or age class of harvested animals is often necessary to interpret the condition and dynamics of wildlife populations. The mammalian eye lens continues to grow until death and hence the dry mass of the eye lens has commonly been used to estimate the age of mammals. The method requires the relationship between eye lens mass and age to be parameterized using individuals of known age. However, predicting age is complicated by the curvilinear relationship between eye lens mass and age. We used frequentist and Bayesian methods to predict the ages and age classes of harvested hog deer Axis porcinus from eye lens mass. Deer were tagged as calves and harvested 4–177 months later in southeastern Australia. Lenses were extracted, fixed and oven-dried. Of the five growth models evaluated, the Lord model best described the relationship between age and eye lens dry mass (R2 = 95%). The precision of age predictions obtained using the Lord model in a Bayesian mode of inference decreased with increasing eye lens dry mass, with the size of the 95% CI equaling or exceeding predicted age for hog deer > 6 years. However, most predictions of hog deer age will have reasonable precision because few animals > 6 years are harvested. Linear discriminant analysis had high predictive power for classifying hog deer to four widely-used age classes (juvenile, yearling, prime-age and senescent). The Bayesian method is recommended for inverse non-linear prediction of age and the frequentist linear discriminant analysis method is recommended for estimating age class. We provide tables of correspondence between hog deer eye lens dry mass and predicted age and age class. Our statistical methods can be used to estimate age and age class for other mammalian species, including from other ageing techniques such as tooth eruption-wear criteria.
Data from: Rivers, refuges, and population divergence of fire-eye antbirds (Pyriglena) in the Amazon Basin
The identification of ecological and evolutionary mechanisms that might account for the elevated biotic diversity in tropical forests is a central theme in evolutionary biology. This issue is especially relevant in the Neotropical region, where biological diversity is the highest in the world, but where few studies have been conducted to test factors causing population differentiation and speciation. We used mtDNA sequence data to examine the genetic structure within white-backed fire-eye (Pyriglena leuconota) populations along the Tocantins River valley in the south-eastern Amazon Basin, and we confront the predictions of the river and the Pleistocene refuge hypotheses with patterns of genetic variation observed in these populations. We also investigated whether these patterns reflect the recently detected shift in the course of the Tocantins River. We sampled a total of 32 individuals east of, and 52 individuals west of, the Tocantins River. Coalescent simulations and phylogeographical and population genetics analytical approaches revealed that mtDNA variation observed for fire-eye populations provides little support for the hypothesis that populations were isolated in glacial forest refuges. Instead, our data strongly support a key prediction of the river hypothesis. Our study shows that the Tocantins River has probably been the historical barrier promoting population divergence in fire-eye antbirds. Our results have important implications for a better understanding of the importance of large Amazonian rivers in vertebrate diversification in the Neotropics.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.