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Distribution. Known only from type locality on Mt Kunupi, New Guinea; possibly restricted to Weyland Range. in Muridae
Distribution. Known only from type locality on Mt Kunupi, New Guinea; possibly restricted to Weyland Range.
Distribution. Known from scattered localities in two areas in E New Guinea: Kikori and Strickland river catchments, and SE Papuan Peninsula. in Muridae
Distribution. Known from scattered localities in two areas in E New Guinea: Kikori and Strickland river catchments, and SE Papuan Peninsula.
Distribution. Recorded from montane localities isolated by intervening areas of lowland habitat in New Guinea, including Foja Mts, Adelbert Range, Huon Peninsula (Finisterre and Saruwaged ranges), and E Central Cordillera, including both N (Jimi and Ramu rivers) and S catchments (Purari and Aroa rivers). in Muridae
Distribution. Recorded from montane localities isolated by intervening areas of lowland habitat in New Guinea, including Foja Mts, Adelbert Range, Huon Peninsula (Finisterre and Saruwaged ranges), and E Central Cordillera, including both N (Jimi and Ramu rivers) and S catchments (Purari and Aroa rivers).
Distribution. Recorded from five montane localities at E end of Central Cordillera and on Papuan Peninsula, New Guinea, including Mt Dayman and Mt Simpson in Maneau Range. in Muridae
Distribution. Recorded from five montane localities at E end of Central Cordillera and on Papuan Peninsula, New Guinea, including Mt Dayman and Mt Simpson in Maneau Range.
FIGURES 67–72. Localities where Stenus species were collected. S in Four new species and additional records of the genus Stenus of southern Africa (Coleoptera: Staphylinidae: Steninae)
FIGURES 67–72. Localities where Stenus species were collected. S. hippoamicus Janák, sp. nov. (67, St. Lucia; 68, Ndumo); S. volkerputhzianus Janák, sp. nov. (69, Himeville, 70, Tugella river); S. hessei L. Benick, S. capicola L. Benick, S. depressiusculus L. Benick, S. cf. grandipennis L. Benick, 1933 (71, Olifantsbos); S. spiniferoides Janák, sp. nov. (72, Langvlei).
FIGURE 1. Begonia Bangsamoro subspecies bangsamoro from different localities A. Misamis Oriental B in Taxonomy of the genus Begonia (Begoniaceae) in Mindanao, Philippines IV: Begonia bangsamoro subsp. bagasa (Begonia section Petermannia), a new subspecies from Zamboanga del Sur
FIGURE 1. Begonia Bangsamoro subspecies bangsamoro from different localities A. Misamis Oriental B. Bukidnon. Photos by: Melbert Baul (A) and MAK Naive (B).
FIGURE. Petalidium mannheimerae, morphology of flowers from different localities in the Richtersveld, Northern Cape, South Africa (A–D), and leaf morphology (E). A. Flower in lateral view (Sun Valley). B. Flower in front view (Sun Valley). C. Flower in front view (Kosies). D. Flowers (Umdaus). E. Branchlet showing leaves being semi-succulent, the blade subconduplicate to conduplicate, recurved towards apex, the margins with isolated, robust, stalked glandular trichomes. Scale bar = 5 mm. Photographs by M. Koekemoer (A–C), N. Jürgens (D), & W. Swanepoel (E). in Petalidium mannheimerae (Acanthaceae), a new species from Namibia and South Africa, with notes on the taxonomic identity of P. parvifolium
FIGURE. Petalidium mannheimerae, morphology of flowers from different localities in the Richtersveld, Northern Cape, South Africa (A–D), and leaf morphology (E). A. Flower in lateral view (Sun Valley). B. Flower in front view (Sun Valley). C. Flower in front view (Kosies). D. Flowers (Umdaus). E. Branchlet showing leaves being semi-succulent, the blade subconduplicate to conduplicate, recurved towards apex, the margins with isolated, robust, stalked glandular trichomes. Scale bar = 5 mm. Photographs by M. Koekemoer (A–C), N. Jürgens (D), & W. Swanepoel (E).
FIGURE. Known distribution of Petalidium mannheimerae (black dots; ●) based on specimens in Herbs PRE, PRU, and WIND. Also depicted are the distribution ranges of P. parvifolium (A. blue), P. linifolium (B. green), and P. lucens (C. orange). A black star (★) marks the locality (2220AA) of the lectotype of P. parvifolium (Fleck 548 in Herb. Z+ZT, barcode Z-000000924). A black triangle (▲) indicates the locality (2518DA) of the lectotype of P. parvifolium var. angustifolium (Fleck 520 in Herb. Z+ZR, barcode Z-000033079), considered a synonym of P. linifolium. A black square (■) depicts the locality (2219CB) of the lectotype of P. wilmaniae (Wilman Herb. KMG 1647 in Herb. BOL, barcode BOL138557, #BOL 15287), here considered a synonym of P. parvifolium. in Petalidium mannheimerae (Acanthaceae), a new species from Namibia and South Africa, with notes on the taxonomic identity of P. parvifolium
FIGURE. Known distribution of Petalidium mannheimerae (black dots; ●) based on specimens in Herbs PRE, PRU, and WIND. Also depicted are the distribution ranges of P. parvifolium (A. blue), P. linifolium (B. green), and P. lucens (C. orange). A black star (★) marks the locality (2220AA) of the lectotype of P. parvifolium (Fleck 548 in Herb. Z+ZT, barcode Z-000000924). A black triangle (▲) indicates the locality (2518DA) of the lectotype of P. parvifolium var. angustifolium (Fleck 520 in Herb. Z+ZR, barcode Z-000033079), considered a synonym of P. linifolium. A black square (■) depicts the locality (2219CB) of the lectotype of P. wilmaniae (Wilman Herb. KMG 1647 in Herb. BOL, barcode BOL138557, #BOL 15287), here considered a synonym of P. parvifolium.
FIGURE 3 in New records of Endectyon (Endectyon) xerampelina (Lamarck, 1814) (Demospongiae: Axinellida: Raspailiidae) from the Tropical Western Atlantic Ocean, with comments on its distribution and type locality
FIGURE 3. Distribution of Endectyon species in the Tropical Western Atlantic Ocean: E. (E.) tenax (square); E. (H.) hamatum (circle); E. (E.) xerampelina (stars) – sensu van Soest (2017), as R. (R.) johnhooperi (gray stars), and new records from N and NE of Brazil (black stars).
FIGURE 2 in New records of Endectyon (Endectyon) xerampelina (Lamarck, 1814) (Demospongiae: Axinellida: Raspailiidae) from the Tropical Western Atlantic Ocean, with comments on its distribution and type locality
FIGURE 2. Spicule complement of Endectyon (Endectyon) xerampelina (Lamarck, 1814) in SEM. A, size variation of choanosomal strongyles and styles; B, subectosomal styles; C, ectosomal styles; D, variation of acanthostrongyles and acanthostyles.
FIGURE 1 in New records of Endectyon (Endectyon) xerampelina (Lamarck, 1814) (Demospongiae: Axinellida: Raspailiidae) from the Tropical Western Atlantic Ocean, with comments on its distribution and type locality
FIGURE 1. Endectyon (Endectyon) xerampelina (Lamarck, 1814). A–B, preserved specimens; C, preserved specimen and detail of membrane and fused branches (arrows); D, hispid surface; E, transverse section showing the ectosome and choanosome; F, bundles of ectosomal styles surrounding the long extra-axial styles; G, position of acanthostrongyles in the peripheral axial skeleton (arrow).
FIGURE 1. Map showing the locality where 26 in A new pedunculate barnacle (Cirripedia: Heteralepadidae) from the Mediterranean with notes on reproduction
FIGURE 1. Map showing the locality where 26 specimens Heteralepas newmani sp. nov. were a nylon line anchored in about 458 m depth was brought up as a by catch on a fisherman's bottom long lines. The line was drifting with the currents in the water column, and specimens were attached at the "top" of the line corresponding to 100-150 m depth.
FIGURES 18–21. New recorded species, dorsal habitus. 18 in Diversity of nocturnal Cerambycidae (Coleoptera: Chrysomeloidea) from seven localities in Michoacán, Mexico, with description of a new species
FIGURES 18–21. New recorded species, dorsal habitus. 18) Eupogonius arizonensis Knull, 1954; 19) Lypsimena fuscata Haldeman, 1847; 20) Arhopalus asperatus (LeConte, 1859); 21) Arhopalus montanus (LeConte, 1873).
FIGURES 14–17 in Diversity of nocturnal Cerambycidae (Coleoptera: Chrysomeloidea) from seven localities in Michoacán, Mexico, with description of a new species
FIGURES 14–17. Adetus michoacanensis Pérez-Flores & Altamirano, sp. nov., holotype female. 14) Dorsal habitus; 15) Ventral habitus; 16) Lateral habitus; 17) Head, frontal view.
FIGURES 3–8. New recorded species, dorsal habitus. 3 in Diversity of nocturnal Cerambycidae (Coleoptera: Chrysomeloidea) from seven localities in Michoacán, Mexico, with description of a new species
FIGURES 3–8. New recorded species, dorsal habitus. 3) Gnaphalodes trachyderoides Thomson, 1861; 4) Tylcus hartwegii (White, 1855); 5) Anelaphus piceus (Chemsak, 1962); 6) Metironeus hesperus Chemsak, 1991; 7) Pseudoperiboeum subarmatum Linsley, 1935; 8) Neocompsa puncticollis asperula (Bates, 1885).
FIGURES 1–2. 1 in Diversity of nocturnal Cerambycidae (Coleoptera: Chrysomeloidea) from seven localities in Michoacán, Mexico, with description of a new species
FIGURES 1–2. 1) Map showing the seven localities in the state of Michoacán; 2) Long-time light trap used in this study.
FIGURES 9–13. New recorded species, dorsal habitus. 9 in Diversity of nocturnal Cerambycidae (Coleoptera: Chrysomeloidea) from seven localities in Michoacán, Mexico, with description of a new species
FIGURES 9–13. New recorded species, dorsal habitus. 9) Compsibidion vanum (Thomson, 1867); 10) Canidia spinicornis (Bates, 1881); 11) Lepturges (Lepturges) angulatus (LeConte, 1852); 12) Sternidius naeviicornis (Bates, 1885); 13) Oreodera noguerai McCarty, 2001.
Genetic datasets, climatic conditions at sampled localities, and occurrence data to: Ice age-driven range shifts of diploids and expanding autotetraploids within a conserved niche (Grünig, Patsiou & Parisod, 2024, New Phytologist)
<div> <h3><strong>This repository includes</strong></h3> - An overview of the raw sequencing reads deposited in the European Nucleotide Archive (ENA) for the 370 individuals sampled in 17 diploid and 19 tetraploid field populations <div>- Scripts used to genotype diploids and autotetraploids samples of <em>Biscutella laevigata</em> from ddRADseq data</div> <div>- Input data (as vcf format) used in population genetic analyses</div> <div>- Scripts used to run the different genetic analyses</div> <div>- Dataset of extracted climatic conditions at sampled localities</div> <div>- Occurrence dataset used for the climatic niche modelling</div> <br> <h3><strong>Description of the data and file structure</strong></h3> <strong>00.ENA_samples_correspondance.txt: </strong>provides ENA project ID, run ID (i.e. raw fastq files), sample ID, and alias for each sample included in the study.<br> <div> </div> <div><strong>1.scripts_reads_to_vcf.zip:</strong> consists of the following:</div> - <strong>1.reads_to_vcf.md: </strong>md file with scripts documenting the read quality check, demultiplexing, mapping, SNP calling using GATK4, and filtering steps<br> <div>- Additional scripts called within <strong>1.reads_to_vcf.md</strong>:</div> <div>-- 1.3. Mapping: <strong>02_run_mapping_XXX.py</strong> and <strong>BWA-mem_bisc1_sg.py</strong> scripts</div> <div>-- 1.4.a. HaplotypeCaller: <strong>03_V1_gvcf.py</strong></div> <div>-- 1.4.b. GDBI + genotypeGVCF: <strong>03_V3_gdbi_genotype_per100scaf.py</strong></div> <br> <div><strong>2.datasets_genetics.tar.gz</strong> consists of the following</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30.vcf.gz</strong>: "Initial SNPs dataset" = biallelic SNPs fulfilling GATK quality hard filtering recommendations, present in at least 50% of samples. Genotypes with DP<15 for diploids and DP<30 for tetraploids are set to no-call. This vcf was used as basis for fastsimcoal dataset preparation, and as basis for subsequent selection of loci fulfilling requirements of each analysis. It includes 2246701 biallelic SNPs for 370 samples</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30_MD05_pruned.vcf.gz:</strong> subset of the "Initial SNPs dataset" retaining SNPs called in at least 50% of samples, and pruned for Linkage disequilibrium. This vcf includes 107574 biallelic SNPs for 370 samples and was used in the analysis of the proportion of diploids diagnostic alleles shared by tetraploids.</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30_MD01_pruned.vcf.gz: </strong>subset of the "Initial SNPs dataset", retaining SNPs called in at least 90% of samples, and pruned for Linkage disequilibrium. This vcf includes 4444 biallelic SNPs for 370 samples and was used in the analyses of Population diversity and differentiation (SpaGeDi, GenoDive, PCA), and f3-statistics.</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30_MD0.1_pruned_MAC3rm.vcf.gz:</strong> subset of the "Initial SNPs dataset", retaining SNPs called in at least 90% of samples, pruned for Linkage disequilibrium, and with a minor allele count of 3. This vcf includes 2593 biallelic SNPs for 370 samples and was used in STRUCTURE analysis</div> <br><br> <div><strong>3.pres_2x.txt:</strong> list of the 128 diploid occurrences used in climatic niche modelling</div> <br> <div><strong>3.pres_4x_strat_reg.txt:</strong> list of the 924 tetraploid occurrences used in climatic niche modelling</div> <br> <div><strong>biscall_chelsa_ordered_noDEM.txt:</strong> climatic data extracted from the CHELSA dataset at sampled localities</div> <br> <div><strong>4.plot_GTfreqs.md:</strong> markdown file including scripts to plot allele and genotype frequencies</div> <br> <div> </div> <h3><strong>Sharing/Access information</strong></h3> Raw sequencing reads have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under the accession number PRJEB48869:<a href="https://www.ebi.ac.uk/ena/browser/view/PRJEB48869"> https://www.ebi.ac.uk/ena/browser/view/PRJEB48869</a></div>
Figure 13. Cape Arid and Middle Island. 1, Type localities where M. avibus and M in Spiders of the mungaich group from Western Australia (Araneae: Salticidae: Euophryinae: Maratus), with one new species from Cape Arid
Figure 13. Cape Arid and Middle Island. 1, Type localities where M. avibus and M. caeruleus have been found, superimposed on an old nautical map of the southwestern coast (1802 survey published by Forrest et al. 1878). Depths are in fathoms (1 fathom = 1.822 m). Coastlines on this early survey map are only approximate. 2, View of Middle Island in the Recherche Archipelago (at right rear, in the distance) from Cape Arid. Several smaller islands nearer to the coast can also be seen. Presently Middle Island is separated from the Cape by a shallow strait.
FIGURE 5 in Morphological and molecular characterization of Coynema poeyi (Coy, García & Álvarez, 1993) (Oxyuridomorpha: Hystrignathidae) from Antillanax pertyi (Kaup, 1869) (Coleoptera: Passalidae) from Cuba and new locality records for the species
FIGURE 5. Maximum likelihood (ML) tree inferred from D2-D3 28S LSU rDNA for several species of the superfamily Thelastomatoidea (Nematoda: Oxyuridomorpha). Cameronia multiovata (Thelastomatidae) and three species of Travassosinema (Travassosinematidae) were used as outgroup taxa. Values at the nodes correspond to bootstrap resampling/ posterior probability.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.