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6,467 results for “process”
Insights into the Major Processes Driving the Global Distribution of Copper in the Ocean from a Global Model
<p>Annual output netcdf output file of the NEMO/PISCES Cu model on the ORCA2 grid. Reference simulation described and discussed in Richon, C. and Tagliabue, A. Insights into the Major Processes Driving the Global Distribution of Copper in the Ocean from a Global Model, Global Biogeochemical Cycles, 2019</p>
SNEMI3D dataset pre-processed for evaluation
<p>These files are pre-processed .tif files for the evaluation of my workflow to predict 3D segmentation of neurons from EM image data.</p> <p>The original dataset was published in the context of the IEEE International Symposium on Biomedical Imaging 2013. Biological findings and further information about hte dataset can be found in following article:</p> <p>Kasthuri, N., Hayworth, K. J., Berger, D. R., Schalek, R. L., Conchello, J. A., Knowles-Barley, S., ... & Roberts, M. (2015). Saturated reconstruction of a volume of neocortex. <em>Cell</em>, <em>162</em>(3), 648-661.</p>
Processed Hi-C contact matrices for "Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization"
<p>Processed Hi-C interaction matrices (iterative correction) saved in .hic format (40kb bins).</p> <p>.hic files were generated by juicer pipeline using processed Hi-C interaction matrices.</p> <p>Only <em>cis </em>interactions were available.</p> <p>To extract the data, please see </p> <p>https://github.com/aidenlab/juicer/wiki/Data-Extraction</p>
Processed data for "Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses"
<p>tar.gz of processed data in the form of compressed R files (rds) of SingleCellExperiment (<a href="https://bioconductor.org/packages/release/bioc/html/SingleCellExperiment.html">https://bioconductor.org/packages/release/bioc/html/SingleCellExperiment.html</a>) objects and a metadata csv for the data in the publication <em>Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses </em>(O'Flanagan et al. 2019).</p>
Data for the publication "Impact of Isolated Atmospheric Aging processes on the Cloud Condensation Nucleiactivation of Soot Particles"
<p>The repository contains the data for the paper:</p> <p>Friebel, F., Lobo, P., Neubauer, D., Lohmann, U., Drossaart van Dusseldorp, S., Mühlhofer, E., and Mensah, A. A.: Impact of isolated atmospheric aging processes on the cloud condensation nuclei activation of soot particles, Atmos. Chem. Phys., 19, 15545–15567, https://doi.org/10.5194/acp-19-15545-2019, 2019.</p> <p>Note that the scripts to plot this data are to be found in the accompanying package (http://dx.doi.org/10.5281/zenodo.3452036)</p>
Processed data from "Chromatin information content landscapes inform transcription factor and DNA interactions"
<p><strong>Chromatin information content landscapes inform transcription factor and DNA interactions</strong></p> <p>Authors: Ricardo D’Oliveira Albanus, Yasuhiro Kyono, John Hensley, Arushi Varshney, Peter Orchard, Jacob O. Kitzman, Stephen C. J. Parker</p> <p><a href="https://doi.org/10.1101/777532">https://doi.org/10.1101/777532</a></p> <p> </p> <p>This record contains the processed data used in our manuscript. For instructions on how to use or regenerate this data, please refer to <a href="https://github.com/ParkerLab/chromatin_information">https://github.com/ParkerLab/chromatin_information</a>.</p>
Processed RNA expression count data from Groen et al.: The strength and pattern of natural selection on rice gene expression
<p>We assessed transcriptome variation in populations of 216 accessions of rice, <em>Oryza sativa</em>, which represented all major varietal groups including indica and japonica. During the 2016 Philippines dry season the accessions were planted in triplicate (with two accessions planted in triplicate three times as replicated checks) in identical alpha-lattice layouts of 660 plots in two fields: a continuously wet paddy, and a field where plants were exposed to intermittent drought in the vegetative and reproductive stages. We measured transcript levels in leaf blades of 50-day-old plants at 33 days after seedling transplant, and 17 days after withholding water in the dry field, using a liquid automation-based 3’ mRNA-seq quantification approach. Samples were multiplexed in batches of 96 per library. Raw sequencing data are available at the SRA in BioProject accession number PRJNA588478. A key to the raw sequencing data in this BioProject can be found in the metadata of the processed RNA expression count data here.</p>
Speech and noise mixtures used in Modelling Auditory Processing and Organisation
<p>Speech and noise signals used in Cooke, M (1991) Modelling Auditory Processing and Organisation, Ph. D. Thesis, Department of Computer Science, University of Sheffield</p>
Figure 1 in Effect of thiamethoxam (organophosphate) on the flies and beetle visitation and cadaveric decomposition process
Figure 1 Decomposition phases in the carcasses of control group and the contaminated group with Thiamethoxam: A fresh, B bloated, C decay, D postdecay, E skeletal.
Figure 4 in Effect of thiamethoxam (organophosphate) on the flies and beetle visitation and cadaveric decomposition process
Figure 4 Nonmetric Multidimensional Scaling (nMDS) obtained from data on the presence and absence of species in each stage of decomposition, for the contaminated and control groups.
Figs 31–32. Zosterodasys transversus, neotype specimens from life. All specimens are from a field sample processed within 24 in Taxonomic Revision and Neotypification of Zosterodasys transversus (Kahl, 1928), with Description of a Mirror-Image Doublet (Ciliophora, Phyllopharyngea, Synhymeniida)
Figs 31–32. Zosterodasys transversus, neotype specimens from life. All specimens are from a field sample processed within 24 hours of collection. 31 – ventral view of a representative neotype cell with an ingested diatom; 32 – variability of body shape and size. Note that the largest specimen (arrow) is almost twice the size of the smaller ones (arrowheads). D – diatoms, OA – oral apparatus, PB – pharyngeal basket. Scale bars: 50 µm (31) and 100 µm (32).
Text-fig. 2. Taphonomic and pathological phenomena of bear bones from Middle Pleistocene deposits from Vykopaná chodba in Za Hájovnou Cave (Moravia, the Czech Republic). a – fragment of left mandibula with pathological condylar process; b – thoracic vertebra with pathological rib facet; c – Mc III dext. with exostoses; d – fragment of juvenile right ulna with bite marks; e – gnawed right tibia with bite marks on proximal part; f – gnawed left calcaneus with bite marks. in Basic Population And Taphonomic Analysis Of Bear Assemblages From Za Hájovnou Cave (Moravia, The Czech Republic): A Fossil Record From 1987-2007
Text-fig. 2. Taphonomic and pathological phenomena of bear bones from Middle Pleistocene deposits from Vykopaná chodba in Za Hájovnou Cave (Moravia, the Czech Republic). a – fragment of left mandibula with pathological condylar process; b – thoracic vertebra with pathological rib facet; c – Mc III dext. with exostoses; d – fragment of juvenile right ulna with bite marks; e – gnawed right tibia with bite marks on proximal part; f – gnawed left calcaneus with bite marks.
Fig. 2 in Hierarchical establishment of information sources during foraging decision-making process involving Acromyrmex subterraneus (Forel, 1893) (Hymenoptera, Formicidae)
Fig. 2. Decision time (s) spent by the A. subterraneus target worker according to number of trips (n) made by the respective target worker and the concentration of pheromone manipulated on the branch that does not lead to the food, estimated by total flow of foragers.
Fig. 1. Y in Hierarchical establishment of information sources during foraging decision-making process involving Acromyrmex subterraneus (Forel, 1893) (Hymenoptera, Formicidae)
Fig. 1. Y-trail system with branches of equal length (225 mm). Branches arranged at an angle of 60◦ connected to a bifurcation. Decision lines (LD) established at fixed points 140 mm far from the bifurcation center on the right and left branches, and 25 mm from the base branch to calculate the A. subterraneus workers' frequency of passage when half of their bodies had crossed each LD.
Data and Code for "A lasting impact of serotonergic psychedelics on visual processing and behavior"
<p>Processed data and analysis code for "<span><span>A lasting impact of serotonergic psychedelics on visual processing and behavior". <span>https://doi.org/10.1101/2024.07.03.601959 </span></span></span></p>
Test dataset for Signature 500 data processing
<p>Subset of dataset from a deployment of Nortek Signature500 on a ocean mooring (M1-1) in the Northern Barents Sea during 2018-2019. These files are intended for testing post-processing software. </p> <p>The files have been converted from the native .ad2cp format to .mat using Nortek <a href="https://www.nortekgroup.com/software" rel="nofollow">SignatureDeployment</a> software.</p> <p>Data in these files were collected during this period:</p> <pre>18 May 2019 12:15 --> 15 Jul 2019 08:00 (57.8 days)</pre> <p> </p>
Figure 9. Dipole eddy evolution from August 7 in Influence of circulation processes on cyanobacteria bloom and phytoplankton succession in the Baltic Sea coastal area
Figure 9. Dipole eddy evolution from August 7 to August 9, 2018 in the suspended matter field from OLCI Sentinel-3A data for August 7 (a) and August 8, 2018 (b) and MSI Sentinel-2B data for August 9, 2008 (c) according Krayushkin et al. (2018).
Figure 5 in Influence of circulation processes on cyanobacteria bloom and phytoplankton succession in the Baltic Sea coastal area
Figure 5. Spatial variations of optical, physical, chemical, and biological parameters along the coast of the Sambia Peninsula and the Curonian Spit. The yellow background corresponds to warm waters in eddies, the blue background corresponds to cold waters, and the grey background corresponds to waters outside eddies.
Figure 4 in Influence of circulation processes on cyanobacteria bloom and phytoplankton succession in the Baltic Sea coastal area
Figure 4. Photosynthetic active radiation attenuation coefficient (Kd) and inverse Secchi depth (D, circles) vs. turbidity and inverse Secchi depth (squares) at stations with cyanobacteria blooms (green symbols), under the influenced of cold water stations (blue symbols) and under the influenced of warm water stations (black symbols), respectively. Turbidity is given in units according to the turbidity standard for Formazine (Formazin Turbidity Unit, ftu).
Figure 3 in Influence of circulation processes on cyanobacteria bloom and phytoplankton succession in the Baltic Sea coastal area
Figure 3. Sea surface temperature (a) and chlorophyll a concentration (b) on August 22 (11:30 UTC), and sea surface temperature (c) on August 23, 2018 (12:10 UTC), all from MODIS-Aqua satellite data; (d) fragment of optical satellite image (red, green, blue composite) derived from the Ocean and Land Color Instrument (OLCI) on Sentinel-3A satellite from August 23, 2018 (9:25 UTС); (e) temperature (˚C) and salinity (f) transects along the northern coast of the Sambia Peninsula and Curonian Spit on August 23, 2018.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.